Prupe.5G055900_v2.0.a1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000141
Physical Location & Seq
Forward (+)
6026068 .. 6027050
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G055900.1

Sequence Viewer

Length: 648 bp
ATGACGGTGGATTCCACGACCATTGAAAAACCGAATACACGACGACTAAGCTTAAATGAATTTGCAGACCTAACCAATGAGGAGTTTCGGGAAATTCATAATGGTTACATGAAACGATCCTCCAAATTGATCATGTCCAATTCCACGAAAGCTACAATGGATTGGAGAGAAAAGGGTGCAGTGACGCCTATGTGGTGTTGGTGGGTGTTCTCAGCAGTGGCAGCGACAGAAGGGGTTAACCGGCTCAAAACCAGAAACTTAATCTCACTATCAGAGCAAGAGCTTGTGGATTGTGACACTACAGGTCAAGATCATGGCTGTGAAGGTGGTCTAATGGATGACGCTTTCCAATTCATCCAACAAAGGCTGACAACTGAAGCTAATTACCCCTACCAGGGTGTAAATGGAACTAGTTGCAACACTCAGAAGGCTGCATCCCAAACAGTGTCAATAAACGGGTACGAGGATGTGCCTAAAAACAACAAAAATGCTATGTTGCAAGCCGTCGCTAACCAACCAATTTCGGTTGCCATTGACGCAAGTGGCTGTACATTCCAGTTTTATTCAAGTGGTGTGTTCATTGGAACATGTGGTATAAACTTAGATCATGGTGCGGGACTAGTAGTGATGGGACTAAATACTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009791 GO:0009814 GO:0009817 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010224 GO:0010282 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0034284 GO:0034285 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046688 GO:0048366 GO:0048367 GO:0048437 GO:0048468 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0080187 GO:0090567 GO:0090693 GO:0097501 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1990169
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

216

Amino Acids

23.57

Weight (kDa)

5.07

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Tree File
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 614
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 59, 93
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 2 cut(s) 461, 550
AfiI CCNNNNNNNGG 2 cut(s) 394, 395
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 2 cut(s) 26, 567
AhlI ACTAGT 2 cut(s) 410, 619
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 4 cut(s) 51, 152, 283, 380
AluI AGCT 4 cut(s) 51, 152, 283, 380
AlwI GGATC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 221, 431
ApoI RAATTY 2 cut(s) 59, 93
BbvI GCAGC 2 cut(s) 233, 418
BccI CCATC 1 cut(s) 622
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 1 cut(s) 395
BclI TGATCA 1 cut(s) 129
BcuI ACTAGT 2 cut(s) 410, 619
BfaI CTAG 3 cut(s) 411, 620, 646
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 2 cut(s) 222, 432
BlsI GCNGC 2 cut(s) 223, 433
Bme1390I CCNGG 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 395
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 2 cut(s) 556, 646
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 4 cut(s) 343, 354, 434, 472
BseLI CCNNNNNNNGG 2 cut(s) 394, 395
BseMII CTCAG 2 cut(s) 225, 437
BseNI ACTGG 2 cut(s) 556, 646
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 233, 418
BsgI GTGCAG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 2 cut(s) 394, 395
BsmFI GGGAC 1 cut(s) 630
Bsp1407I TGTACA 1 cut(s) 548
Bsp143I GATC 4 cut(s) 116, 129, 310, 604
BspACI CCGC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 224, 436
BspPI GGATC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 548
BsrI ACTGG 2 cut(s) 556, 646
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 116, 129, 310, 604
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 2 cut(s) 7, 445
BstACI GRCGYC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 4 cut(s) 47, 211, 423, 601
BstF5I GGATG 4 cut(s) 343, 354, 434, 472
BstKTI GATC 4 cut(s) 119, 132, 313, 607
BstMBI GATC 4 cut(s) 116, 129, 310, 604
BstMWI GCNNNNNNNGC 2 cut(s) 221, 536
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 233, 418
BtsCI GGATG 4 cut(s) 343, 354, 434, 472
BtsI GCAGTG 2 cut(s) 186, 222
BtsIMutI CAGTG 3 cut(s) 186, 222, 450
Cac8I GCNNGC 1 cut(s) 501
Cfr10I RCCGGY 1 cut(s) 240
CseI GACGC 3 cut(s) 193, 350, 545
Csp6I GTAC 2 cut(s) 460, 549
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 5 cut(s) 109, 133, 314, 588, 608
CviQI GTAC 2 cut(s) 460, 549
DdeI CTNAG 4 cut(s) 47, 211, 423, 601
DpnI GATC 4 cut(s) 118, 131, 312, 606
DpnII GATC 4 cut(s) 116, 129, 310, 604
Eco57I CTGAAG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 393
FaeI CATG 5 cut(s) 112, 136, 317, 591, 611
FaiI YATR 9 cut(s) 99, 110, 134, 191, 315, 494, 589, 596, 609
FaqI GGGAC 1 cut(s) 630
FatI CATG 5 cut(s) 108, 132, 313, 587, 607
FauI CCCGC 1 cut(s) 607
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 222, 432
FokI GGATG 4 cut(s) 341, 350, 421, 479
Fsp4HI GCNGC 2 cut(s) 222, 432
FspBI CTAG 3 cut(s) 411, 620, 646
GluI GCNGC 2 cut(s) 222, 432
HapII CCGG 1 cut(s) 241
HgaI GACGC 3 cut(s) 193, 350, 545
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 5 cut(s) 112, 136, 317, 591, 611
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 1 cut(s) 11
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 274, 426
Hpy188III TCNNGA 2 cut(s) 89, 308
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 2 cut(s) 45, 509
HpyAV CCTTC 3 cut(s) 224, 317, 421
HpyCH4III ACNGT 2 cut(s) 7, 445
HpyCH4V TGCA 5 cut(s) 65, 179, 417, 434, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 536
HpyF3I CTNAG 4 cut(s) 47, 211, 423, 601
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 5 cut(s) 112, 136, 317, 591, 611
Ksp22I TGATCA 1 cut(s) 129
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 4 cut(s) 116, 129, 310, 604
LpnPI CCDG 7 cut(s) 254, 265, 288, 380, 407, 569, 627
Lsp1109I GCAGC 2 cut(s) 233, 418
LweI GCATC 1 cut(s) 443
MaeI CTAG 3 cut(s) 411, 620, 646
MaeIII GTNAC 3 cut(s) 104, 181, 293
MalI GATC 4 cut(s) 118, 131, 312, 606
MboI GATC 4 cut(s) 116, 129, 310, 604
MluCI AATT 7 cut(s) 59, 93, 125, 139, 350, 382, 519
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 3 cut(s) 73, 130, 457
MseI TTAA 3 cut(s) 53, 237, 260
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 2 cut(s) 221, 536
NdeII GATC 4 cut(s) 116, 129, 310, 604
NlaIII CATG 5 cut(s) 112, 136, 317, 591, 611
NmuCI GTSAC 2 cut(s) 181, 293
NspI RCATGY 1 cut(s) 591
PciI ACATGT 1 cut(s) 587
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 223, 433
PscI ACATGT 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
RsaI GTAC 2 cut(s) 461, 550
RsaNI GTAC 2 cut(s) 460, 549
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 3 cut(s) 53, 237, 260
SatI GCNGC 2 cut(s) 222, 432
Sau3AI GATC 4 cut(s) 116, 129, 310, 604
ScrFI CCNGG 1 cut(s) 395
SetI ASST 7 cut(s) 53, 72, 154, 285, 307, 328, 382
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 318
SpeI ACTAGT 2 cut(s) 410, 619
Sse9I AATT 7 cut(s) 59, 93, 125, 139, 350, 382, 519
SsiI CCGC 1 cut(s) 614
SspMI CTAG 3 cut(s) 411, 620, 646
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 7, 445
TasI AATT 7 cut(s) 59, 93, 125, 139, 350, 382, 519
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 53, 237, 260
Tru9I TTAA 3 cut(s) 53, 237, 260
TscAI CASTG 3 cut(s) 186, 222, 450
TseFI GTSAC 2 cut(s) 181, 293
TseI GCWGC 2 cut(s) 221, 431
Tsp45I GTSAC 2 cut(s) 181, 293
TspDTI ATGAA 5 cut(s) 72, 86, 125, 343, 568
TspRI CASTG 3 cut(s) 186, 222, 450
XapI RAATTY 2 cut(s) 59, 93
XceI RCATGY 1 cut(s) 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XspI CTAG 3 cut(s) 411, 620, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.