Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

8447356 .. 8447946

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G106300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

TGTTGTTGGGCCTTTTCAGCAGTGGCAGCAACAGAAGGAATTACTCAGCTTACAACAGGTAAACTCATCTCTTTGTCTGAGCAAGAGCTTGTTGACTGTGACACCAATGGCGAAGACCAAGGCTGCGAGGGTGGTTTAATGGATGATGCCTTTCAGTTCATCCAACAAAATCATGGGCTTGGTACGGAAGCTAACTACCCCTACAGCGGTGTTGATGGTACGTGCAACACCAAGAAAGAAGCCAGCATTGCAGCCAAGATAACTGGCTATGAAGACGTGCCTACAAACAGTGAACAAGCCCTTCTCAAGGCTGTTGCTAATCAACCCGTCTCTGTTGCCATTGATGCAAGTGGTTCTGACTTCCAATTCTATTCAAGTGGTGTCTTTACCGGAACATGTGGAACGAGCCTGGATCATGGTGTTACTGCTGTTGGTTATGGAGTCGGTGATGATGGGACTAAGTTTTGGTTGGTGAAGAATTCATGGGGCACAGAATGGGGCGAAGAAGGCTACATAAGAATGCAAAGAGATGTTGATGCAGCGGAAGGACTTTGTGGCATTGCTATGTCTGCCTCTTACCCTACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

197

Amino Acids

20.6

Weight (kDa)

4.08

Isoelectric Point (pI)

12.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	207, 542
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	478
AfaI	GTAC	2 cut(s)	184, 220
AfiI	CCNNNNNNNGG	2 cut(s)	206, 307
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	375
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	3 cut(s)	49, 88, 191
AluI	AGCT	3 cut(s)	49, 88, 191
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	4 cut(s)	26, 123, 251, 539
ApoI	RAATTY	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	458, 484
BaeGI	GKGCMC	1 cut(s)	491
BbsI	GAAGAC	2 cut(s)	120, 279
BbvI	GCAGC	4 cut(s)	38, 110, 263, 551
BccI	CCATC	2 cut(s)	209, 446
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	4 cut(s)	27, 124, 252, 540
BlsI	GCNGC	4 cut(s)	28, 125, 253, 541
Bme1390I	CCNGG	1 cut(s)	410
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	3 cut(s)	136, 334, 526
BpiI	GAAGAC	2 cut(s)	120, 279
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 307
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	246, 558
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	148, 159
BseLI	CCNNNNNNNGG	2 cut(s)	206, 307
BseMI	GCAATG	2 cut(s)	246, 558
BseMII	CTCAG	2 cut(s)	59, 69
BseNI	ACTGG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	4 cut(s)	38, 110, 263, 551
BshFI	GGCC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	2 cut(s)	206, 307
BsmAI	GTCTC	1 cut(s)	334
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	2 cut(s)	207, 542
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	58, 70
BspPI	GGATC	1 cut(s)	420
BsrDI	GCAATG	2 cut(s)	246, 558
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	98, 290
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	45, 78, 459
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	148, 159
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 26, 248, 344, 507, 569
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	4 cut(s)	38, 110, 263, 551
BstV2I	GAAGAC	2 cut(s)	120, 279
BsuRI	GGCC	1 cut(s)	11
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	148, 159
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 295
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	183, 219
CviAII	CATG	5 cut(s)	173, 396, 416, 483, 588
CviQI	GTAC	2 cut(s)	183, 219
DdeI	CTNAG	3 cut(s)	45, 78, 459
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	5 cut(s)	176, 399, 419, 486, 591
FaiI	YATR	9 cut(s)	174, 270, 397, 417, 438, 484, 515, 566, 589
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	5 cut(s)	172, 395, 415, 482, 587
Fnu4HI	GCNGC	4 cut(s)	27, 124, 252, 540
FokI	GGATG	2 cut(s)	146, 155
Fsp4HI	GCNGC	4 cut(s)	27, 124, 252, 540
GluI	GCNGC	4 cut(s)	27, 124, 252, 540
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	5 cut(s)	176, 399, 419, 486, 591
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	2 cut(s)	458, 484
Hpy166II	GTNNAC	3 cut(s)	62, 94, 293
Hpy188I	TCNGA	2 cut(s)	79, 358
Hpy8I	GTNNAC	3 cut(s)	62, 94, 293
HpyAV	CCTTC	4 cut(s)	29, 311, 500, 539
HpyCH4III	ACNGT	2 cut(s)	98, 290
HpyCH4IV	ACGT	2 cut(s)	221, 276
HpyCH4V	TGCA	6 cut(s)	225, 251, 347, 523, 539, 587
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 26, 248, 344, 507, 569
HpyF3I	CTNAG	3 cut(s)	45, 78, 459
HpySE526I	ACGT	2 cut(s)	221, 276
Hsp92II	CATG	5 cut(s)	176, 399, 419, 486, 591
Kzo9I	GATC	1 cut(s)	412
LpnPI	CCDG	6 cut(s)	42, 249, 256, 395, 403, 422
Lsp1109I	GCAGC	4 cut(s)	38, 110, 263, 551
LweI	GCATC	3 cut(s)	136, 334, 526
MaeII	ACGT	2 cut(s)	221, 276
MaeIII	GTNAC	2 cut(s)	98, 421
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	4 cut(s)	125, 284, 487, 515
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	3 cut(s)	39, 365, 478
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	121, 583
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	2 cut(s)	518, 563
MspA1I	CMGCKG	2 cut(s)	207, 542
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	6 cut(s)	17, 26, 248, 344, 507, 569
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	5 cut(s)	176, 399, 419, 486, 591
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	399
PciI	ACATGT	1 cut(s)	395
PctI	GAATGC	1 cut(s)	525
PkrI	GCNGC	4 cut(s)	28, 125, 253, 541
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	222
PscI	ACATGT	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	9
RsaI	GTAC	2 cut(s)	184, 220
RsaNI	GTAC	2 cut(s)	183, 219
RseI	CAYNNNNRTG	2 cut(s)	518, 563
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	4 cut(s)	27, 124, 252, 540
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	491
SetI	ASST	6 cut(s)	51, 61, 90, 193, 224, 279
SfaNI	GCATC	3 cut(s)	136, 334, 526
SfcI	CTRYAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	518, 563
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	39, 365, 478
SsiI	CCGC	2 cut(s)	207, 542
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	98, 290
TaiI	ACGT	2 cut(s)	224, 279
TasI	AATT	3 cut(s)	39, 365, 478
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	2 cut(s)	27, 295
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	4 cut(s)	26, 123, 251, 539
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	148, 285, 471
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	27, 295
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	478
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.