Rorug02G0286900

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
31316636 .. 31317779
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0286900.1

Sequence Viewer

Length: 381 bp
ATGGAGGACCAACATGGTGGTGGAGGTGGAGGTGGATTTAGCGGCGGAGCTTCATTCATATGGATTGTTTCTTGCTCTTTATTCCTATCTATAATGGTCGGCGGCGGGTGTCTTTTGATGTATGTTATCATTCCTCATGAGCCAGGAACCATGTCCTGGCTTGCTATTACTGGAGTTGCATTGGTTTGCCTTCCATGGATGTTTTGGTTCTTCACATTCATATATCGTGTCATTACTCGGATGCGCAGAAATAACTCTAATTCTGATGGAGTTGTGACAATTGCAAATGTTAATAGAGCTAGTTCTATTGGTGGAAAGAATAATACTAACGCTGCAAATACATCTACGCCTACGGAGTCGAAGACTTATTCTGCTGAATGA

Protein Analysis

126

Amino Acids

13.48

Weight (kDa)

7.75

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 156
AciI CCGC 4 cut(s) 42, 45, 102, 105
AfiI CCNNNNNNNGG 1 cut(s) 156
AjnI CCWGG 2 cut(s) 142, 155
AluBI AGCT 2 cut(s) 50, 299
AluI AGCT 2 cut(s) 50, 299
ApeKI GCWGC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 7
AvaII GGWCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 319
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 144, 157
BfaI CTAG 1 cut(s) 300
BisI GCNGC 3 cut(s) 43, 103, 333
BlsI GCNGC 3 cut(s) 44, 104, 334
Bme1390I CCNGG 2 cut(s) 144, 157
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 144, 157
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 175
BseBI CCWGG 2 cut(s) 144, 157
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 204, 246
BseLI CCNNNNNNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 4 cut(s) 42, 45, 102, 105
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 144, 157
BstC8I GCNNGC 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 204, 246
BstHHI GCGC 1 cut(s) 246
BstNI CCWGG 2 cut(s) 144, 157
BstSCI CCNGG 2 cut(s) 142, 155
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 2 cut(s) 204, 246
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 136
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 7
CviAII CATG 4 cut(s) 14, 137, 151, 195
CviJI RGCY 4 cut(s) 50, 142, 160, 299
CviKI_1 RGCY 4 cut(s) 50, 142, 160, 299
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 142, 155
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 17, 140, 154, 198
FatI CATG 4 cut(s) 13, 136, 150, 194
FauI CCCGC 1 cut(s) 98
FauNDI CATATG 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 43, 103, 333
FokI GGATG 2 cut(s) 211, 253
Fsp4HI GCNGC 3 cut(s) 43, 103, 333
FspBI CTAG 1 cut(s) 300
FspI TGCGCA 1 cut(s) 245
GlaI GCGC 1 cut(s) 245
GluI GCNGC 3 cut(s) 43, 103, 333
GsuI CTGGAG 1 cut(s) 192
HhaI GCGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 17, 140, 154, 198
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 240, 265
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 179, 284, 335
Hsp92II CATG 4 cut(s) 17, 140, 154, 198
HspAI GCGC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 129, 142, 156, 156, 169
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 274
MboII GAAGA 2 cut(s) 202, 373
MfeI CAATTG 1 cut(s) 279
MluCI AATT 2 cut(s) 259, 279
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 3 cut(s) 17, 23, 144
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 2 cut(s) 18, 58
MspR9I CCNGG 2 cut(s) 144, 157
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 2 cut(s) 144, 157
NcoI CCATGG 1 cut(s) 194
NdeI CATATG 1 cut(s) 59
NlaIII CATG 4 cut(s) 17, 140, 154, 198
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 274
NsbI TGCGCA 1 cut(s) 245
PagI TCATGA 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 3 cut(s) 44, 104, 334
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp6I CCWGG 2 cut(s) 142, 155
PspGI CCWGG 2 cut(s) 142, 155
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 7
RseI CAYNNNNRTG 2 cut(s) 18, 58
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 43, 103, 333
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 144, 157
SetI ASST 4 cut(s) 28, 34, 52, 301
SfaNI GCATC 1 cut(s) 231
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 2 cut(s) 18, 58
Sse9I AATT 2 cut(s) 259, 279
SsiI CCGC 4 cut(s) 42, 45, 102, 105
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 142, 155
StyI CCWWGG 1 cut(s) 194
TaqI TCGA 1 cut(s) 359
TasI AATT 2 cut(s) 259, 279
TauI GCSGC 2 cut(s) 45, 105
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 42, 46, 208
TspGWI ACGGA 1 cut(s) 368
Van91I CCANNNNNTGG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 2 cut(s) 17, 201
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.