Prupe.3G119400_v2.0.a1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
10417136 .. 10417533
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G119400.1

Sequence Viewer

Length: 327 bp
ATGTTGGGGGCTTGGTCTTGTGAAGCCATTTCTTGTAGTCTGCAAGATGCATCTATGCATGGGAGATACGAGCAATGGCTAGTTCATAATAGCCGAGTATACAACGACATTAATGAGAATTTAAAGTTATTAAGCGTCAATCGATTTGCAGATCTTACGAATGAAGAGTTCAAAGCAACAAGAAATAGATTCAAGCGGCATGAATGCTCGACAAAGACAACTTCTTTCAAATATGAAAATGTTACGGCTAAAGTGCCAGCTACAGTGGACTGGAGAAAACAAGGAGCTGTTACCCCAATGAAGGACCAAGGCCAATGTGGTAATTAA

Protein Analysis

109

Amino Acids

12.4

Weight (kDa)

8.75

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AciI CCGC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 3 cut(s) 172, 193, 229
AluBI AGCT 2 cut(s) 260, 287
AluI AGCT 2 cut(s) 260, 287
AoxI GGCC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 118
AseI ATTAAT 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 304
AvaII GGWCC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 261
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 261
BglII AGATCT 1 cut(s) 151
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmsI GCATC 2 cut(s) 37, 59
BpmI CTGGAG 1 cut(s) 292
Bsa29I ATCGAT 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 275
BshFI GGCC 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 301
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 312
BspDI ATCGAT 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 1 cut(s) 151
BssNAI GTATAC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 307
Bst1107I GTATAC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BstZ17I GTATAC 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 142
BsuRI GGCC 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 304
ClaI ATCGAT 1 cut(s) 142
CseI GACGC 1 cut(s) 124
CviAII CATG 2 cut(s) 59, 200
CviJI RGCY 8 cut(s) 11, 26, 79, 93, 248, 260, 287, 312
CviKI_1 RGCY 8 cut(s) 11, 26, 79, 93, 248, 260, 287, 312
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DraI TTTAAA 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 2 cut(s) 52, 60
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 2 cut(s) 62, 203
FaiI YATR 6 cut(s) 56, 60, 87, 100, 201, 234
FatI CATG 2 cut(s) 58, 199
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 80
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 1 cut(s) 312
HgaI GACGC 1 cut(s) 124
Hin1II CATG 2 cut(s) 62, 203
HinfI GANTC 1 cut(s) 189
Hpy166II GTNNAC 2 cut(s) 100, 268
Hpy8I GTNNAC 2 cut(s) 100, 268
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 4 cut(s) 43, 50, 58, 149
Hsp92II CATG 2 cut(s) 62, 203
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 2 cut(s) 256, 270
LweI GCATC 2 cut(s) 37, 59
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 241, 289
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 151
MluCI AATT 2 cut(s) 118, 322
Mph1103I ATGCAT 2 cut(s) 52, 60
MseI TTAA 4 cut(s) 111, 122, 131, 325
Mva1269I GAATGC 1 cut(s) 209
NdeII GATC 1 cut(s) 151
NlaIII CATG 2 cut(s) 62, 203
NmeAIII GCCGAG 1 cut(s) 119
NsiI ATGCAT 2 cut(s) 52, 60
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 198
PshBI ATTAAT 1 cut(s) 111
PspPI GGNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 151
SaqAI TTAA 4 cut(s) 111, 122, 131, 325
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 304
SetI ASST 2 cut(s) 262, 289
SfaNI GCATC 2 cut(s) 37, 59
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 304
Sse9I AATT 2 cut(s) 118, 322
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 142, 209
TasI AATT 2 cut(s) 118, 322
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 4 cut(s) 111, 122, 131, 325
Tru9I TTAA 4 cut(s) 111, 122, 131, 325
TscAI CASTG 1 cut(s) 270
TspDTI ATGAA 5 cut(s) 74, 177, 216, 249, 314
TspRI CASTG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 304
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 2 cut(s) 52, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.