Rorug06G0140600

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
19905990 .. 19906253
264 bp
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UTR
Exon/CDS
Intron
Rorug06G0140600.1

Sequence Viewer

Length: 264 bp
ATGGTCACAAACATTATGTGTCCCATTGCATACCATCATGTAAGGCGTATACTTGGGCCTCGGTGGGGTTCACTTTTAGGTGTCATCTTCGCTTTCGCCATCTCAGGTTTCATGCATGAGGTTCTCTTCTATTATGTAACTCATGTACGTCCCACATGCAAAATGATGTGCTTCTTTGTCCTACAAGGTGTGTGCTTGGTGATTGAGCTGGGGGTGAAGAAGGTTGTGGCTCAGAAGCTGCGGTTTCACACTTTCACCCATTAG

Protein Analysis

87

Amino Acids

10.06

Weight (kDa)

9.76

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 2 - 60 4.5e-08 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 49
AciI CCGC 1 cut(s) 241
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 65
AluBI AGCT 2 cut(s) 208, 238
AluI AGCT 2 cut(s) 208, 238
AlwNI CAGNNNCTG 1 cut(s) 238
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 211, 226, 247
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 42, 107
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 117, 245
BseXI GCAGC 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 58
BslFI GGGAC 2 cut(s) 6, 135
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 6, 135
BsnI GGCC 1 cut(s) 58
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 2 cut(s) 116, 244
BsrDI GCAATG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 59
BssNAI GTATAC 1 cut(s) 50
Bst1107I GTATAC 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 103, 231
BstNSI RCATGY 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 225
BstZ17I GTATAC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 146
CviAII CATG 5 cut(s) 38, 112, 116, 143, 156
CviJI RGCY 4 cut(s) 58, 208, 230, 238
CviKI_1 RGCY 4 cut(s) 58, 208, 230, 238
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 103, 231
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 117
FaeI CATG 5 cut(s) 41, 115, 119, 146, 159
FaiI YATR 9 cut(s) 17, 31, 39, 50, 113, 117, 135, 144, 157
FaqI GGGAC 2 cut(s) 6, 135
FatI CATG 5 cut(s) 37, 111, 115, 142, 155
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 239
GsaI CCCAGC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 58
Hin1II CATG 5 cut(s) 41, 115, 119, 146, 159
HphI GGTGA 3 cut(s) 211, 226, 247
Hpy166II GTNNAC 2 cut(s) 50, 71
Hpy188I TCNGA 1 cut(s) 234
Hpy8I GTNNAC 2 cut(s) 50, 71
HpyAV CCTTC 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 29, 115, 159
HpyF3I CTNAG 2 cut(s) 103, 231
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 5 cut(s) 41, 115, 119, 146, 159
LpnPI CCDG 2 cut(s) 90, 194
Lsp1109I GCAGC 1 cut(s) 225
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 4, 136
MboII GAAGA 3 cut(s) 79, 118, 229
MnlI CCTC 2 cut(s) 69, 112
Mph1103I ATGCAT 1 cut(s) 117
NlaIII CATG 5 cut(s) 41, 115, 119, 146, 159
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 117
NspI RCATGY 1 cut(s) 159
PkrI GCNGC 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 238
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SatI GCNGC 1 cut(s) 239
Sau96I GGNCC 1 cut(s) 56
SetI ASST 8 cut(s) 82, 109, 123, 151, 190, 210, 225, 240
SsiI CCGC 1 cut(s) 241
TaiI ACGT 1 cut(s) 151
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 100
XceI RCATGY 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.