MD17G1231800.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
28019872 .. 28025729
5858 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1231800.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGGAGATCCTAAACCTGCAGCTATGGAAGTATATGTGCTTGGGCTTGATCCTCATGTTGGGAGCTTGGTCTTCTCAAGCCACTTCTCGCAGTCTGAAAGATGCATCAATGTACGGGAGATACGAGCAATGGTTGGCTCGTTATGGTCGCGTATATAACGACATCAATGAGATGGAAACTCGTTTCAAGATATTCAAGGAAAATGTGGCGTTTATAGAATTTTCTAATAAAGATGCAAACAAACCTTACAAATTAAGCGTCAATCAATTTGCAGACCTTACAAATGAAGAGTTCAAAGCCTCAAGAAATGGATTCAAGGGCCATGAATGTTCCACGAAGACGACTTCTTTCAAATATGAAAATGTGACTGCTGCTTTGCCAGCAACAATGGACTGGAGAAAGAAGGGAGCTGTAACCCCCATTAAGGACCAAGGCCAATGTGGATGTTGTTGGGCTTTTTCAGCAGTTGCCGCCACCGAAGGTGTTACACAGCTTACAACTGGATGCTGTTGGGCTTTTTCAGCAGTTGCCGCCACCGAAGGTGTTACACAGCTTACAACTGGTAAATTGATCTCTTTGTCTGAGCAAGAGCTCGTTGATTGTGACACCGCTGGTGAAGACCAAGGTTGTGAGGGTGGCTTAATGGACGATGCGTTTCAGTTCATCCAACAAAATCACGGGATTAGCACAGAAACTAATTACCCCTACAACGGTGTTGATGGTACATGTAACACCAAGAAGGAAGCCATCATTGCAGCCAAGATAACTGGCTTTGAGGATGTGCCTGCAAATAGTGAAAAGGCCCTTCTAACCGCTGTTGCTCATCAACCTGTTTCCGTTGCCATCGATGCTAGCGGTTCCGACTTCCAATTCTATTCAAGTGGTGTCTTCACTGGAACTTGTGGAACGAGTCTTGACCATGGTGTTACCGCTGTTGGATATGGCGTGAGCGAGGATGGGACTAAGTATTGGCTAGTGAAGAACTCATGGGGTGCAGAATGGGGCGAAGCTGGGTACATAAGAATGCAAAGAGATGTTGCCGCACCTGAAGGACTTTGTGGGATTGCTATGTCTGCCTCTTACCCCACAGCTTAG

Protein Analysis

365

Amino Acids

39.61

Weight (kDa)

4.92

Isoelectric Point (pI)

21.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 41 - 98 4.2e-18 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 126 - 167 4.5e-14 Papain family cysteine protease
Peptidase_C1 PF00112 164 - 363 1.4e-72 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 24
AccII CGCG 1 cut(s) 150
AciI CCGC 7 cut(s) 471, 531, 609, 813, 855, 930, 1041
AclWI GGATC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 1068
AfaI GTAC 3 cut(s) 113, 724, 1016
AfiI CCNNNNNNNGG 3 cut(s) 58, 424, 710
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 6 cut(s) 187, 196, 295, 316, 352, 879
AluBI AGCT 8 cut(s) 22, 65, 410, 493, 553, 592, 1010, 1091
AluI AGCT 8 cut(s) 22, 65, 410, 493, 553, 592, 1010, 1091
Alw21I GWGCWC 1 cut(s) 594
AlwI GGATC 1 cut(s) 43
AoxI GGCC 3 cut(s) 319, 433, 801
ApeKI GCWGC 3 cut(s) 19, 371, 755
ApoI RAATTY 1 cut(s) 218
ArsI GACNNNNNNTTYG 4 cut(s) 243, 275, 358, 390
AspS9I GGNCC 3 cut(s) 319, 427, 802
AsuHPI GGTGA 1 cut(s) 626
AsuNHI GCTAGC 1 cut(s) 851
AvaII GGWCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 594
BbsI GAAGAC 4 cut(s) 63, 344, 624, 880
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 3 cut(s) 31, 358, 767
BccI CCATC 5 cut(s) 166, 713, 755, 851, 950
BfaI CTAG 2 cut(s) 852, 974
BfmI CTRYAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 6 cut(s) 20, 372, 471, 531, 756, 1041
BlsI GCNGC 6 cut(s) 21, 373, 472, 532, 757, 1042
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 3 cut(s) 319, 427, 802
BmiI GGNNCC 1 cut(s) 859
BmsI GCATC 6 cut(s) 91, 113, 223, 494, 640, 838
BmtI GCTAGC 1 cut(s) 855
BpiI GAAGAC 4 cut(s) 63, 344, 624, 880
BpmI CTGGAG 1 cut(s) 415
BpuEI CTTGAG 2 cut(s) 60, 286
Bsa29I ATCGAT 1 cut(s) 846
BsaJI CCNNGG 3 cut(s) 430, 622, 919
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 424, 710
Bse1I ACTGG 5 cut(s) 398, 505, 565, 772, 898
Bse3DI GCAATG 2 cut(s) 134, 750
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 3 cut(s) 430, 622, 919
BseGI GGATG 5 cut(s) 449, 509, 663, 784, 961
BseLI CCNNNNNNNGG 3 cut(s) 58, 424, 710
BseMI GCAATG 2 cut(s) 134, 750
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 5 cut(s) 398, 505, 565, 772, 898
BseXI GCAGC 3 cut(s) 31, 358, 767
BseYI CCCAGC 1 cut(s) 1010
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 321, 435, 803
BshVI ATCGAT 1 cut(s) 846
BsiHKAI GWGCWC 1 cut(s) 594
BslFI GGGAC 1 cut(s) 973
BslI CCNNNNNNNGG 3 cut(s) 58, 424, 710
BsmFI GGGAC 1 cut(s) 973
BsmI GAATGC 1 cut(s) 1029
BsnI GGCC 3 cut(s) 321, 435, 803
Bsp1286I GDGCHC 1 cut(s) 594
Bsp143I GATC 3 cut(s) 6, 48, 570
Bsp19I CCATGG 1 cut(s) 919
BspACI CCGC 7 cut(s) 471, 531, 609, 813, 855, 930, 1041
BspANI GGCC 3 cut(s) 321, 435, 803
BspCNI CTCAG 1 cut(s) 574
BspDI ATCGAT 1 cut(s) 846
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 859
BspMAI CTGCAG 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 24
BspOI GCTAGC 1 cut(s) 855
BspPI GGATC 1 cut(s) 43
BsrDI GCAATG 2 cut(s) 134, 750
BsrI ACTGG 5 cut(s) 398, 505, 565, 772, 898
BssECI CCNNGG 3 cut(s) 430, 622, 919
BssMI GATC 3 cut(s) 6, 48, 570
BssT1I CCWWGG 3 cut(s) 430, 622, 919
Bst4CI ACNGT 1 cut(s) 713
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 381, 786, 853
BstDEI CTNAG 3 cut(s) 582, 963, 1092
BstDSI CCRYGG 1 cut(s) 919
BstF5I GGATG 5 cut(s) 449, 509, 663, 784, 961
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 3 cut(s) 9, 51, 573
BstMBI GATC 3 cut(s) 6, 48, 570
BstMWI GCNNNNNNNGC 8 cut(s) 380, 461, 470, 521, 530, 752, 848, 1073
BstNSI RCATGY 1 cut(s) 729
BstSFI CTRYAG 1 cut(s) 17
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 31, 358, 767
BstV2I GAAGAC 4 cut(s) 63, 344, 624, 880
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 846
BsuRI GGCC 3 cut(s) 321, 435, 803
BsuTUI ATCGAT 1 cut(s) 846
BtgI CCRYGG 1 cut(s) 919
BtsCI GGATG 5 cut(s) 449, 509, 663, 784, 961
BtsIMutI CAGTG 1 cut(s) 891
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 3 cut(s) 381, 786, 853
Cfr13I GGNCC 3 cut(s) 319, 427, 802
ClaI ATCGAT 1 cut(s) 846
CseI GACGC 1 cut(s) 247
Csp6I GTAC 3 cut(s) 112, 723, 1015
CviAII CATG 5 cut(s) 55, 323, 726, 920, 987
CviQI GTAC 3 cut(s) 112, 723, 1015
DdeI CTNAG 3 cut(s) 582, 963, 1092
DpnI GATC 3 cut(s) 8, 50, 572
DpnII GATC 3 cut(s) 6, 48, 570
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 592
Eco130I CCWWGG 3 cut(s) 430, 622, 919
Eco24I GRGCYC 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 592
Eco57I CTGAAG 1 cut(s) 1068
EcoICRI GAGCTC 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 802
EcoT14I CCWWGG 3 cut(s) 430, 622, 919
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 3 cut(s) 430, 622, 919
FaeI CATG 5 cut(s) 58, 326, 729, 923, 990
FaqI GGGAC 1 cut(s) 973
FatI CATG 5 cut(s) 54, 322, 725, 919, 986
Fnu4HI GCNGC 6 cut(s) 20, 372, 471, 531, 756, 1041
FokI GGATG 5 cut(s) 456, 516, 650, 791, 968
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 6 cut(s) 20, 372, 471, 531, 756, 1041
FspBI CTAG 2 cut(s) 852, 974
GluI GCNGC 6 cut(s) 20, 372, 471, 531, 756, 1041
GsaI CCCAGC 1 cut(s) 1014
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 3 cut(s) 321, 435, 803
HgaI GACGC 1 cut(s) 247
Hin1II CATG 5 cut(s) 58, 326, 729, 923, 990
HinfI GANTC 2 cut(s) 312, 910
HphI GGTGA 1 cut(s) 626
Hpy188I TCNGA 3 cut(s) 96, 583, 862
Hpy188III TCNNGA 3 cut(s) 187, 303, 914
HpyAV CCTTC 6 cut(s) 397, 473, 533, 733, 815, 1043
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4V TGCA 8 cut(s) 19, 104, 236, 272, 755, 788, 995, 1027
HpyF10VI GCNNNNNNNGC 8 cut(s) 380, 461, 470, 521, 530, 752, 848, 1073
HpyF3I CTNAG 3 cut(s) 582, 963, 1092
Hsp92II CATG 5 cut(s) 58, 326, 729, 923, 990
Kzo9I GATC 3 cut(s) 6, 48, 570
LmnI GCTCC 2 cut(s) 62, 407
Lsp1109I GCAGC 3 cut(s) 31, 358, 767
LweI GCATC 6 cut(s) 91, 113, 223, 494, 640, 838
MaeI CTAG 2 cut(s) 852, 974
MaeIII GTNAC 7 cut(s) 364, 412, 484, 544, 602, 728, 925
MalI GATC 3 cut(s) 8, 50, 572
MboI GATC 3 cut(s) 6, 48, 570
MboII GAAGA 6 cut(s) 63, 299, 349, 629, 880, 991
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 6 cut(s) 218, 251, 266, 566, 697, 869
MlyI GAGTC 1 cut(s) 919
MmeI TCCRAC 3 cut(s) 691, 885, 916
MnlI CCTC 6 cut(s) 62, 310, 625, 769, 946, 1087
Mph1103I ATGCAT 1 cut(s) 106
MseI TTAA 3 cut(s) 254, 423, 641
MslI CAYNNNNRTG 1 cut(s) 1022
MspA1I CMGCKG 3 cut(s) 611, 815, 932
Mva1269I GAATGC 1 cut(s) 1029
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 8 cut(s) 380, 461, 470, 521, 530, 752, 848, 1073
NcoI CCATGG 1 cut(s) 919
NdeII GATC 3 cut(s) 6, 48, 570
NheI GCTAGC 1 cut(s) 851
NlaIII CATG 5 cut(s) 58, 326, 729, 923, 990
NlaIV GGNNCC 1 cut(s) 859
NmuCI GTSAC 2 cut(s) 364, 602
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 729
PciI ACATGT 1 cut(s) 725
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 1029
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 6 cut(s) 21, 373, 472, 532, 757, 1042
PleI GAGTC 1 cut(s) 918
PpsI GAGTC 1 cut(s) 918
PscI ACATGT 1 cut(s) 725
Psp124BI GAGCTC 1 cut(s) 594
PspFI CCCAGC 1 cut(s) 1010
PspN4I GGNNCC 1 cut(s) 859
PspPI GGNCC 3 cut(s) 319, 427, 802
PstI CTGCAG 1 cut(s) 21
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 3 cut(s) 113, 724, 1016
RsaNI GTAC 3 cut(s) 112, 723, 1015
RseI CAYNNNNRTG 1 cut(s) 1022
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 3 cut(s) 254, 423, 641
SatI GCNGC 6 cut(s) 20, 372, 471, 531, 756, 1041
Sau3AI GATC 3 cut(s) 6, 48, 570
Sau96I GGNCC 3 cut(s) 319, 427, 802
SchI GAGTC 1 cut(s) 919
SduI GDGCHC 1 cut(s) 594
SfaNI GCATC 6 cut(s) 91, 113, 223, 494, 640, 838
SfcI CTRYAG 1 cut(s) 17
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 2 cut(s) 75, 301
SmoI CTYRAG 2 cut(s) 75, 301
Sse9I AATT 6 cut(s) 218, 251, 266, 566, 697, 869
SsiI CCGC 7 cut(s) 471, 531, 609, 813, 855, 930, 1041
SspMI CTAG 2 cut(s) 852, 974
SstI GAGCTC 1 cut(s) 594
StyI CCWWGG 3 cut(s) 430, 622, 919
TaaI ACNGT 1 cut(s) 713
TaqI TCGA 1 cut(s) 846
TasI AATT 6 cut(s) 218, 251, 266, 566, 697, 869
TauI GCSGC 3 cut(s) 473, 533, 1043
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 3 cut(s) 254, 423, 641
Tru9I TTAA 3 cut(s) 254, 423, 641
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 2 cut(s) 364, 602
TseI GCWGC 3 cut(s) 19, 371, 755
Tsp45I GTSAC 2 cut(s) 364, 602
TspDTI ATGAA 4 cut(s) 300, 339, 372, 652
TspGWI ACGGA 1 cut(s) 826
TspRI CASTG 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 729
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 2 cut(s) 852, 974
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.