Rmu_sc0008800.1_g000002

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008800.1
Physical Location & Seq
Reverse (-)
9262 .. 9702
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008800.1_g000002.1.cds

Sequence Viewer

Length: 441 bp
atggagttcaccaacctcggaaaatgtctttgtttggctctgatcctcgtcatgtttggagcttggtcttctgaagccacttctcgcactctccaagatgcatcaatgtatgggcgatacaagcaatggatggatcattatggatatgtctataatgagatcaacgaaaaggagaagcgcttccagatattcaaggaaaatgtagcatttgtagaatcatccaacaatgatgcaagcaaaccttacaaattaagtgtcgatcaatttgcagaccttacaaatgaagaattcattgcctatagaaatcgaatcaaggggcatgaatgttccacaaagaccacatctttcaagtatgaaaacgttactgtgccagctactgtggactggagacagaaaggagctgtaaccccaatcaaggatcaaggccaatgtggtacgtaa

Protein Analysis

146

Amino Acids

16.81

Weight (kDa)

6.72

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 360
AclWI GGATC 3 cut(s) 37, 141, 426
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 436
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 2 cut(s) 193, 349
AluBI AGCT 3 cut(s) 62, 374, 401
AluI AGCT 3 cut(s) 62, 374, 401
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 3 cut(s) 37, 141, 426
AlwNI CAGNNNCTG 1 cut(s) 377
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 1 cut(s) 424
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 60
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BcoDI GTCTC 1 cut(s) 382
BfmI CTRYAG 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 181
BmsI GCATC 3 cut(s) 88, 110, 220
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 406
BsaAI YACGTR 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 2 cut(s) 131, 291
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 2 cut(s) 135, 218
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMI GCAATG 2 cut(s) 131, 291
BseNI ACTGG 1 cut(s) 389
BshFI GGCC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 382
BsnI GGCC 1 cut(s) 426
Bsp143I GATC 5 cut(s) 42, 133, 159, 259, 418
BspANI GGCC 1 cut(s) 426
BspPI GGATC 3 cut(s) 37, 141, 426
BsrDI GCAATG 2 cut(s) 131, 291
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 5 cut(s) 42, 133, 159, 259, 418
Bst4CI ACNGT 2 cut(s) 367, 379
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 235, 372
BstF5I GGATG 2 cut(s) 135, 218
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 5 cut(s) 45, 136, 162, 262, 421
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 5 cut(s) 42, 133, 159, 259, 418
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 298
BstSNI TACGTA 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 2 cut(s) 135, 218
Cac8I GCNNGC 2 cut(s) 235, 372
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 435
CviAII CATG 2 cut(s) 52, 320
CviJI RGCY 6 cut(s) 38, 62, 77, 374, 401, 426
CviKI_1 RGCY 6 cut(s) 38, 62, 77, 374, 401, 426
CviQI GTAC 1 cut(s) 435
DpnI GATC 5 cut(s) 44, 135, 161, 261, 420
DpnII GATC 5 cut(s) 42, 133, 159, 259, 418
Eco105I TACGTA 1 cut(s) 438
Eco47III AGCGCT 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 2 cut(s) 55, 323
FaiI YATR 8 cut(s) 53, 111, 141, 147, 153, 300, 321, 354
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 2 cut(s) 51, 319
FokI GGATG 2 cut(s) 142, 205
GlaI GCGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 406
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 426
HhaI GCGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 55, 323
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 215, 309
Hpy166II GTNNAC 2 cut(s) 9, 382
Hpy188I TCNGA 3 cut(s) 20, 42, 73
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 9, 382
HpyCH4III ACNGT 2 cut(s) 367, 379
HpyCH4IV ACGT 2 cut(s) 360, 437
HpyCH4V TGCA 3 cut(s) 101, 233, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpySE526I ACGT 2 cut(s) 360, 437
Hsp92II CATG 2 cut(s) 55, 323
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 5 cut(s) 42, 133, 159, 259, 418
LmnI GCTCC 2 cut(s) 59, 398
LpnPI CCDG 3 cut(s) 197, 370, 384
LweI GCATC 3 cut(s) 88, 110, 220
MaeII ACGT 2 cut(s) 360, 437
MaeIII GTNAC 2 cut(s) 361, 403
MalI GATC 5 cut(s) 44, 135, 161, 261, 420
MboI GATC 5 cut(s) 42, 133, 159, 259, 418
MboII GAAGA 2 cut(s) 60, 296
MluCI AATT 3 cut(s) 248, 263, 287
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 2 cut(s) 26, 56
Mph1103I ATGCAT 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 5 cut(s) 42, 133, 159, 259, 418
NlaIII CATG 2 cut(s) 55, 323
NsiI ATGCAT 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 215, 309
Ppu21I YACGTR 1 cut(s) 438
Psp1406I AACGTT 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SaqAI TTAA 1 cut(s) 251
Sau3AI GATC 5 cut(s) 42, 133, 159, 259, 418
SetI ASST 8 cut(s) 18, 64, 244, 276, 363, 376, 403, 440
SfaNI GCATC 3 cut(s) 88, 110, 220
SfcI CTRYAG 1 cut(s) 298
SnaBI TACGTA 1 cut(s) 438
Sse9I AATT 3 cut(s) 248, 263, 287
TaaI ACNGT 2 cut(s) 367, 379
TaiI ACGT 2 cut(s) 363, 440
TaqI TCGA 2 cut(s) 258, 307
TasI AATT 3 cut(s) 248, 263, 287
TfiI GAWTC 2 cut(s) 215, 309
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TspDTI ATGAA 4 cut(s) 280, 297, 336, 369
XapI RAATTY 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.