Rmu_sc0005514.1_g000005

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005514.1
Physical Location & Seq
Forward (+)
13435 .. 14506
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005514.1_g000005.1.cds

Sequence Viewer

Length: 975 bp
atgctaggggcttggtcttctgaagccacttcccgcagtctccaagatgcaatgatgtatgggagatacgagcaatggatggctcgttatggacgtgtatatactgacattgccgagaaggagaagcgcttccaaatattcaaggacaatgtagcctttatagaatcttccaacgacgaagtacacaaaccttacaaattaagtgtcaatagatttgcagaccttacaaatgaagagttcacagcctcaagaaatcgattcaaggggcatgaatgttccacaaagaccacttctttcaaatatgaaaatgttaccgtgccagctacaatggactggaggcagaaaggagctgtgactcccatcaaggaccaaggccaatgtggatgctgttgggctttctcagcagtggcagccatggaaggaattactcaaatttcaactggtaaattgatttctttgtccgaacaagagttagtggactgtgatgtcaatggtgaagaccaaggctgtgagggaggcttgatggatgatgcctttcagttcatcaatcaaaatcatggacttagtaccgagactaattacccctatactggtgttgatggtacatgcaatgccaagaaggaagcaaaccatgcagcctcgataactggccatgaagatgtgcccgctaacagtgaaagtgcacttcttaaggctgtcgctaatcaacctatttctgttgccattgatgctagtggatctgatttccagttctattcaagtggtgttttcacaggaacttgtggaacgagcctagatcatggtgttaccgctgttggttatggcgtcagtgatgatgggactaagtattggttggtgaagaactcatggggggcagaatggggtgaagaagggtacataagaatgcaaagagatgttgctgcacaggaaggtctttgcggtattgctatggaagcctcttaccccactgcttaa

Protein Analysis

324

Amino Acids

35.47

Weight (kDa)

4.75

Isoelectric Point (pI)

20.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 485
AciI CCGC 4 cut(s) 34, 666, 810, 939
AclWI GGATC 1 cut(s) 745
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 825
AfaI GTAC 4 cut(s) 183, 568, 604, 896
AfeI AGCGCT 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 590
AflII CTTAAG 1 cut(s) 689
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 5 cut(s) 142, 262, 298, 438, 759
AjiI CACGTC 1 cut(s) 95
AluBI AGCT 2 cut(s) 323, 350
AluI AGCT 2 cut(s) 323, 350
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 2 cut(s) 44, 566
Alw44I GTGCAC 1 cut(s) 681
AlwI GGATC 1 cut(s) 745
Aor51HI AGCGCT 1 cut(s) 128
AoxI GGCC 2 cut(s) 373, 649
ApaLI GTGCAC 1 cut(s) 681
ApeKI GCWGC 3 cut(s) 410, 635, 920
ApoI RAATTY 1 cut(s) 432
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 367
AsuHPI GGTGA 3 cut(s) 506, 868, 896
AvaII GGWCC 1 cut(s) 367
BaeGI GKGCMC 2 cut(s) 666, 685
BalI TGGCCA 1 cut(s) 651
BbsI GAAGAC 2 cut(s) 9, 504
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 3 cut(s) 422, 647, 907
BccI CCATC 5 cut(s) 73, 368, 517, 593, 830
BcoDI GTCTC 2 cut(s) 44, 566
BfaI CTAG 3 cut(s) 5, 732, 794
BfoI RGCGCY 1 cut(s) 130
BfrI CTTAAG 1 cut(s) 689
BisI GCNGC 3 cut(s) 411, 636, 921
BlsI GCNGC 3 cut(s) 412, 637, 922
Bme18I GGWCC 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 367
BmsI GCATC 4 cut(s) 37, 374, 520, 718
BpiI GAAGAC 2 cut(s) 9, 504
BpmI CTGGAG 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 232
Bsa29I ATCGAT 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 825
BsaJI CCNNGG 3 cut(s) 370, 414, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse1I ACTGG 5 cut(s) 338, 445, 595, 652, 748
Bse3DI GCAATG 4 cut(s) 57, 80, 108, 616
BseCI ATCGAT 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 370, 414, 502
BseGI GGATG 3 cut(s) 84, 389, 532
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMI GCAATG 4 cut(s) 57, 80, 108, 616
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 5 cut(s) 338, 445, 595, 652, 748
BseSI GKGCMC 2 cut(s) 666, 685
BseXI GCAGC 3 cut(s) 422, 647, 907
BsgI GTGCAG 1 cut(s) 906
BshFI GGCC 2 cut(s) 375, 651
BshVI ATCGAT 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 685
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 2 cut(s) 44, 566
BsmFI GGGAC 1 cut(s) 853
BsmI GAATGC 1 cut(s) 909
BsnI GGCC 2 cut(s) 375, 651
Bsp1286I GDGCHC 2 cut(s) 666, 685
Bsp143I GATC 2 cut(s) 737, 796
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 4 cut(s) 34, 666, 810, 939
BspANI GGCC 2 cut(s) 375, 651
BspCNI CTCAG 1 cut(s) 413
BspDI ATCGAT 1 cut(s) 256
BspPI GGATC 1 cut(s) 745
BspTI CTTAAG 1 cut(s) 689
BsrDI GCAATG 4 cut(s) 57, 80, 108, 616
BsrI ACTGG 5 cut(s) 338, 445, 595, 652, 748
BssECI CCNNGG 3 cut(s) 370, 414, 502
BssMI GATC 2 cut(s) 737, 796
BssNI GRCGYC 1 cut(s) 825
BssT1I CCWWGG 3 cut(s) 370, 414, 502
Bst4CI ACNGT 3 cut(s) 316, 482, 674
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 825
BstAFI CTTAAG 1 cut(s) 689
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 321, 666
BstDEI CTNAG 3 cut(s) 400, 563, 843
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 3 cut(s) 84, 389, 532
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 2 cut(s) 740, 799
BstMAI GTCTC 2 cut(s) 44, 566
BstMBI GATC 2 cut(s) 737, 796
BstMWI GCNNNNNNNGC 5 cut(s) 401, 410, 632, 728, 953
BstNSI RCATGY 1 cut(s) 609
BstSLI GKGCMC 2 cut(s) 666, 685
BstV1I GCAGC 3 cut(s) 422, 647, 907
BstV2I GAAGAC 2 cut(s) 9, 504
BstX2I RGATCY 1 cut(s) 737
BstYI RGATCY 1 cut(s) 737
Bsu15I ATCGAT 1 cut(s) 256
BsuRI GGCC 2 cut(s) 375, 651
BsuTUI ATCGAT 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 414
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 84, 389, 532
BtsI GCAGTG 2 cut(s) 411, 966
BtsIMutI CAGTG 4 cut(s) 411, 679, 835, 966
Cac8I GCNNGC 2 cut(s) 321, 666
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 367
ClaI ATCGAT 1 cut(s) 256
CseI GACGC 1 cut(s) 814
Csp6I GTAC 4 cut(s) 182, 567, 603, 895
CviAII CATG 8 cut(s) 269, 415, 557, 606, 632, 653, 800, 867
CviQI GTAC 4 cut(s) 182, 567, 603, 895
DdeI CTNAG 3 cut(s) 400, 563, 843
DpnI GATC 2 cut(s) 739, 798
DpnII GATC 2 cut(s) 737, 796
DrdI GACNNNNNNGTC 1 cut(s) 485
DseDI GACNNNNNNGTC 1 cut(s) 485
EaeI YGGCCR 1 cut(s) 649
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 3 cut(s) 370, 414, 502
Eco47I GGWCC 1 cut(s) 367
Eco47III AGCGCT 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 42
EcoT14I CCWWGG 3 cut(s) 370, 414, 502
ErhI CCWWGG 3 cut(s) 370, 414, 502
FaeI CATG 8 cut(s) 272, 418, 560, 609, 635, 656, 803, 870
FaqI GGGAC 1 cut(s) 853
FatI CATG 8 cut(s) 268, 414, 556, 605, 631, 652, 799, 866
FauI CCCGC 2 cut(s) 41, 673
Fnu4HI GCNGC 3 cut(s) 411, 636, 921
FokI GGATG 3 cut(s) 91, 396, 539
Fsp4HI GCNGC 3 cut(s) 411, 636, 921
FspBI CTAG 3 cut(s) 5, 732, 794
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 411, 636, 921
GsuI CTGGAG 1 cut(s) 355
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 2 cut(s) 375, 651
HgaI GACGC 1 cut(s) 814
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 825
Hin1II CATG 8 cut(s) 272, 418, 560, 609, 635, 656, 803, 870
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 3 cut(s) 164, 258, 355
HphI GGTGA 3 cut(s) 506, 868, 896
Hpy166II GTNNAC 4 cut(s) 184, 240, 478, 683
Hpy188I TCNGA 3 cut(s) 22, 463, 742
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 4 cut(s) 184, 240, 478, 683
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 5 cut(s) 112, 413, 613, 884, 923
HpyCH4III ACNGT 3 cut(s) 316, 482, 674
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 7 cut(s) 50, 218, 609, 635, 683, 907, 923
HpyF10VI GCNNNNNNNGC 5 cut(s) 401, 410, 632, 728, 953
HpyF3I CTNAG 3 cut(s) 400, 563, 843
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 825
Hsp92II CATG 8 cut(s) 272, 418, 560, 609, 635, 656, 803, 870
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 737, 796
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 8 cut(s) 319, 333, 426, 576, 633, 759, 761, 911
Lsp1109I GCAGC 3 cut(s) 422, 647, 907
LweI GCATC 4 cut(s) 37, 374, 520, 718
MaeI CTAG 3 cut(s) 5, 732, 794
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 3 cut(s) 310, 352, 805
MalI GATC 2 cut(s) 739, 798
MboI GATC 2 cut(s) 737, 796
MboII GAAGA 7 cut(s) 9, 159, 245, 509, 668, 871, 899
MflI RGATCY 1 cut(s) 737
MhlI GDGCHC 2 cut(s) 666, 685
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 5 cut(s) 197, 423, 432, 446, 577
MluNI TGGCCA 1 cut(s) 651
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 6 cut(s) 256, 330, 505, 509, 649, 967
Mox20I TGGCCA 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 651
MseI TTAA 3 cut(s) 200, 690, 973
MslI CAYNNNNRTG 2 cut(s) 657, 902
Msp20I TGGCCA 1 cut(s) 651
MspA1I CMGCKG 1 cut(s) 812
MspCI CTTAAG 1 cut(s) 689
Mva1269I GAATGC 1 cut(s) 909
MwoI GCNNNNNNNGC 5 cut(s) 401, 410, 632, 728, 953
NcoI CCATGG 1 cut(s) 414
NdeII GATC 2 cut(s) 737, 796
NlaIII CATG 8 cut(s) 272, 418, 560, 609, 635, 656, 803, 870
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PctI GAATGC 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 164, 258
PkrI GCNGC 3 cut(s) 412, 637, 922
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 367
PsuI RGATCY 1 cut(s) 737
RsaI GTAC 4 cut(s) 183, 568, 604, 896
RsaNI GTAC 4 cut(s) 182, 567, 603, 895
RseI CAYNNNNRTG 2 cut(s) 657, 902
SaqAI TTAA 3 cut(s) 200, 690, 973
SatI GCNGC 3 cut(s) 411, 636, 921
Sau3AI GATC 2 cut(s) 737, 796
Sau96I GGNCC 1 cut(s) 367
SchI GAGTC 1 cut(s) 349
SduI GDGCHC 2 cut(s) 666, 685
SetI ASST 7 cut(s) 97, 193, 225, 325, 352, 712, 934
SfaNI GCATC 4 cut(s) 37, 374, 520, 718
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 657, 902
SmlI CTYRAG 2 cut(s) 247, 689
SmoI CTYRAG 2 cut(s) 247, 689
Sse9I AATT 5 cut(s) 197, 423, 432, 446, 577
SsiI CCGC 4 cut(s) 34, 666, 810, 939
SspI AATATT 1 cut(s) 138
SspMI CTAG 3 cut(s) 5, 732, 794
StyI CCWWGG 3 cut(s) 370, 414, 502
TaaI ACNGT 3 cut(s) 316, 482, 674
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 256, 641
TasI AATT 5 cut(s) 197, 423, 432, 446, 577
TatI WGTACW 1 cut(s) 181
TfiI GAWTC 2 cut(s) 164, 258
Tru1I TTAA 3 cut(s) 200, 690, 973
Tru9I TTAA 3 cut(s) 200, 690, 973
TscAI CASTG 4 cut(s) 411, 679, 835, 973
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 410, 635, 920
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 5 cut(s) 246, 285, 318, 532, 669
TspRI CASTG 4 cut(s) 411, 679, 835, 973
Vha464I CTTAAG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 681
VpaK11BI GGWCC 1 cut(s) 367
XapI RAATTY 1 cut(s) 432
XceI RCATGY 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 5, 732, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.