Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

65326439 .. 65365790

Gene Structure 39352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG450400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTCGTTATGGACGTTTCTATGAAGAGATCAATGAGAAGGAGAGGCGCTTCCAAATATTTAAGGAAAATGTAGCATTTGTAGAATCATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGTCAATCAATTTGCAGACCTTACAGATGAAGAATTCATTGCTTTGAGAAATCGATTCAAGGGGCATGAATGTTCCACAAAGACCACTTCTTTCAAGTATGAAAACGTTACTGTGCCAGCTACTGTGGACTGGAGACAGAAAGGAGCTGAAACCCCAATCAGACCAAGGCCAATGTGGATCATGTTGGGCTTTCTCAGCTGTGGCAACCATGGAAGGAATCACTCAACTTTCAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

121

Amino Acids

14.23

Weight (kDa)

9.23

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	1 - 54	7.2e-18	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	184, 220, 358
AluBI	AGCT	3 cut(s)	245, 272, 324
AluI	AGCT	3 cut(s)	245, 272, 324
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	52
BmsI	GCATC	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	290, 334
Bse1I	ACTGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	290, 334
BseGI	GGATG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	295
BshVI	ATCGAT	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	30, 303
Bsp19I	CCATGG	1 cut(s)	334
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	333
BspDI	ATCGAT	1 cut(s)	178
BspPI	GGATC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	290, 334
BssMI	GATC	2 cut(s)	30, 303
BssT1I	CCWWGG	2 cut(s)	290, 334
Bst4CI	ACNGT	2 cut(s)	238, 250
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	106, 243
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	33, 306
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	30, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	295
BsuTUI	ATCGAT	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	106, 243
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	178
CviAII	CATG	3 cut(s)	191, 307, 335
CviJI	RGCY	6 cut(s)	5, 245, 272, 295, 315, 324
CviKI_1	RGCY	6 cut(s)	5, 245, 272, 295, 315, 324
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	32, 305
DpnII	GATC	2 cut(s)	30, 303
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	290, 334
EcoRI	GAATTC	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	290, 334
ErhI	CCWWGG	2 cut(s)	290, 334
FaeI	CATG	3 cut(s)	194, 310, 338
FaiI	YATR	6 cut(s)	12, 24, 192, 225, 308, 336
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FatI	CATG	3 cut(s)	190, 306, 334
FokI	GGATG	1 cut(s)	76
GlaI	GCGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	194, 310, 338
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	86, 180, 343
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	34, 333
HpyCH4III	ACNGT	2 cut(s)	238, 250
HpyCH4IV	ACGT	2 cut(s)	16, 231
HpyCH4V	TGCA	2 cut(s)	104, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	16, 231
Hsp92II	CATG	3 cut(s)	194, 310, 338
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	30, 303
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	3 cut(s)	241, 255, 346
LweI	GCATC	1 cut(s)	91
MaeII	ACGT	2 cut(s)	16, 231
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	32, 305
MboI	GATC	2 cut(s)	30, 303
MboII	GAAGA	2 cut(s)	38, 167
MluCI	AATT	3 cut(s)	119, 134, 158
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	39
MseI	TTAA	2 cut(s)	63, 122
MspA1I	CMGCKG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	321
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	30, 303
NlaIII	CATG	3 cut(s)	194, 310, 338
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	3 cut(s)	86, 180, 343
Psp1406I	AACGTT	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	63, 122
Sau3AI	GATC	2 cut(s)	30, 303
SetI	ASST	8 cut(s)	19, 115, 147, 234, 247, 274, 326, 365
SfaNI	GCATC	1 cut(s)	91
Sse9I	AATT	3 cut(s)	119, 134, 158
SspI	AATATT	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	290, 334
TaaI	ACNGT	2 cut(s)	238, 250
TaiI	ACGT	2 cut(s)	19, 234
TaqI	TCGA	1 cut(s)	178
TasI	AATT	3 cut(s)	119, 134, 158
TfiI	GAWTC	3 cut(s)	86, 180, 343
Tru1I	TTAA	2 cut(s)	63, 122
Tru9I	TTAA	2 cut(s)	63, 122
TspDTI	ATGAA	5 cut(s)	39, 151, 168, 207, 240
XapI	RAATTY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.