Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

22927469 .. 22928640

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTTCACCAACCAAAGCAAATGTATCTGCATAGCCTTGGTCCTCATGTTGGGGGCATGGTCTTCCGAAGCCACTTCTCGTAGTCTCCAAGATGCATTAGCTTATGGGAGGTACGAGCAATGGATAGCTCGTTATGGACGTGTATATAATGATATCAACGAGAAGGAGGACCGCTTCAAGATATTCAAGGAGAATGAGGCATATGTAGAATCTTCCAACAAAGAAGGAAACAAACTTTACAAATTGAGTCTGAACCAATTTGCAGACCTTACAAATGAAGAGTTCACTGCCTCAAGAAATCGATTCAAGGGCCACGAATGTTCCACGAAAACCACTACTTTCAAGTATGAAAATGCTACTGTGCCGACTACAATGGACTGGAGAAAGAAGGGAGCTGTAACTCCCGTCAAGGACCAAGGCCAATGTGGAAGTTGTTGGGCATTCTCAGCAGTGGGAGCTATGGAAGGAATCACTCAACTTACAACTGGTAAACTAATCTCTTTGTCTGAGCAAGAGTTGGTTGATTGTGATGTCAAAGGTGTAGACCAAGGCTGTGCAGGTGGCCTTATGGACGATGCCTTTCAGTTCGTCATTCAAAATCATGGTATTAACACTGAGGCTAATTATCCCTACACGGCTACTGATGGTACGTGCAATGCCAAGAAGGAAGCAGTCCATGCAGCCACGATAAATGGCCACGAAGATGTGCCTGCAAACAGCGAAAGCGCCCTTCTTAAGGCCGTGGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGTGGATATGACTTCCAGTTATATTCAAGTGGTGTTTTCACAGGAACATGTGGAACGGAGCTAGACCATGGTGTTACCGCTGTTGGTTATGGCGTGAGTGCTGATGGGACTAAGTACTGGTTGGTAAAGAACTCATGGGGTGCACAATGGGGTGAAGAAGGTTATATAAGAATGCAAAGAGATGTTGCTGCACCGGGAGGCCTTTGTGGCATTGCCATGGAAGCCTCTTACCCCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

340

Amino Acids

37.07

Weight (kDa)

4.98

Isoelectric Point (pI)

18.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	1.8e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 339	2.2e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	2 cut(s)	175, 858
AcoI	YGGCCR	1 cut(s)	697
AfaI	GTAC	3 cut(s)	116, 652, 896
AfiI	CCNNNNNNNGG	2 cut(s)	52, 739
AflII	CTTAAG	1 cut(s)	737
AflIII	ACRYGT	2 cut(s)	142, 827
AgsI	TTSAA	6 cut(s)	181, 190, 310, 346, 599, 807
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	5 cut(s)	104, 131, 398, 461, 841
AluI	AGCT	5 cut(s)	104, 131, 398, 461, 841
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	921
AoxI	GGCC	6 cut(s)	313, 421, 565, 697, 741, 979
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	2 cut(s)	683, 968
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	4 cut(s)	43, 172, 313, 415
AsuC2I	CCSGG	1 cut(s)	975
AsuHPI	GGTGA	1 cut(s)	944
AvaII	GGWCC	3 cut(s)	43, 172, 415
BaeGI	GKGCMC	1 cut(s)	925
BalI	TGGCCA	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	925
BbvI	GCAGC	2 cut(s)	695, 955
BccI	CCATC	2 cut(s)	641, 878
BceAI	ACGGC	2 cut(s)	654, 728
BcnI	CCSGG	1 cut(s)	975
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	780, 842
BfoI	RGCGCY	1 cut(s)	732
BfrI	CTTAAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	551
BglI	GCCNNNNNGGC	1 cut(s)	987
BisI	GCNGC	2 cut(s)	684, 969
BlsI	GCNGC	2 cut(s)	685, 970
BmcAI	AGTACT	1 cut(s)	896
Bme1390I	CCNGG	1 cut(s)	975
Bme18I	GGWCC	3 cut(s)	43, 172, 415
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	4 cut(s)	43, 172, 313, 415
BmrFI	CCNGG	1 cut(s)	975
BmsI	GCATC	3 cut(s)	85, 568, 766
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	975
Bsa29I	ATCGAT	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	654
BsaJI	CCNNGG	6 cut(s)	39, 418, 550, 744, 847, 996
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 739
Bse1I	ACTGG	4 cut(s)	386, 493, 796, 902
Bse3DI	GCAATG	3 cut(s)	128, 664, 990
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	6 cut(s)	39, 418, 550, 744, 847, 996
BseLI	CCNNNNNNNGG	2 cut(s)	52, 739
BseMI	GCAATG	3 cut(s)	128, 664, 990
BseMII	CTCAG	3 cut(s)	462, 501, 609
BseNI	ACTGG	4 cut(s)	386, 493, 796, 902
BseSI	GKGCMC	1 cut(s)	925
BseXI	GCAGC	2 cut(s)	695, 955
BsgI	GTGCAG	2 cut(s)	579, 954
BshFI	GGCC	6 cut(s)	315, 423, 567, 699, 743, 981
BshVI	ATCGAT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	925
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	2 cut(s)	52, 739
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	901
BsmI	GAATGC	2 cut(s)	443, 957
BsnI	GGCC	6 cut(s)	315, 423, 567, 699, 743, 981
Bsp1286I	GDGCHC	1 cut(s)	925
Bsp19I	CCATGG	2 cut(s)	847, 996
BspACI	CCGC	2 cut(s)	175, 858
BspANI	GGCC	6 cut(s)	315, 423, 567, 699, 743, 981
BspCNI	CTCAG	3 cut(s)	461, 502, 610
BspDI	ATCGAT	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	3 cut(s)	128, 664, 990
BsrI	ACTGG	4 cut(s)	386, 493, 796, 902
BssECI	CCNNGG	6 cut(s)	39, 418, 550, 744, 847, 996
BssT1I	CCWWGG	5 cut(s)	39, 418, 550, 847, 996
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	654
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	4 cut(s)	448, 510, 618, 891
BstDSI	CCRYGG	3 cut(s)	744, 847, 996
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstH2I	RGCGCY	1 cut(s)	732
BstHHI	GCGC	1 cut(s)	731
BstMAI	GTCTC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 987, 1001
BstNSI	RCATGY	1 cut(s)	831
BstSCI	CCNGG	1 cut(s)	973
BstSLI	GKGCMC	1 cut(s)	925
BstV1I	GCAGC	2 cut(s)	695, 955
BstV2I	GAAGAC	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	6 cut(s)	315, 423, 567, 699, 743, 981
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	3 cut(s)	744, 847, 996
BtrI	CACGTC	1 cut(s)	143
BtsI	GCAGTG	3 cut(s)	288, 459, 1014
BtsIMutI	CAGTG	4 cut(s)	288, 459, 615, 1014
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	714
CfoI	GCGC	1 cut(s)	731
Cfr13I	GGNCC	4 cut(s)	43, 172, 313, 415
ClaI	ATCGAT	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	115, 651, 895
CviAII	CATG	8 cut(s)	49, 60, 605, 680, 828, 848, 915, 997
CviQI	GTAC	3 cut(s)	115, 651, 895
DdeI	CTNAG	4 cut(s)	448, 510, 618, 891
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	5 cut(s)	39, 418, 550, 847, 996
Eco147I	AGGCCT	1 cut(s)	981
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	43, 172, 415
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	5 cut(s)	39, 418, 550, 847, 996
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	5 cut(s)	39, 418, 550, 847, 996
FaeI	CATG	8 cut(s)	52, 63, 608, 683, 831, 851, 918, 1000
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	8 cut(s)	48, 59, 604, 679, 827, 847, 914, 996
FauNDI	CATATG	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	684, 969
Fsp4HI	GCNGC	2 cut(s)	684, 969
FspBI	CTAG	2 cut(s)	780, 842
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	2 cut(s)	684, 969
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	732
HaeIII	GGCC	6 cut(s)	315, 423, 567, 699, 743, 981
HapII	CCGG	1 cut(s)	974
HhaI	GCGC	1 cut(s)	731
Hin1II	CATG	8 cut(s)	52, 63, 608, 683, 831, 851, 918, 1000
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HinfI	GANTC	4 cut(s)	212, 250, 306, 471
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	1 cut(s)	944
Hpy166II	GTNNAC	5 cut(s)	9, 288, 494, 547, 923
Hpy188I	TCNGA	3 cut(s)	70, 255, 511
Hpy188III	TCNNGA	2 cut(s)	181, 297
Hpy8I	GTNNAC	5 cut(s)	9, 288, 494, 547, 923
HpyAV	CCTTC	7 cut(s)	160, 221, 385, 461, 661, 743, 932
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	142, 653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 987, 1001
HpyF3I	CTNAG	4 cut(s)	448, 510, 618, 891
HpySE526I	ACGT	2 cut(s)	142, 653
Hsp92II	CATG	8 cut(s)	52, 63, 608, 683, 831, 851, 918, 1000
HspAI	GCGC	1 cut(s)	729
LmnI	GCTCC	3 cut(s)	395, 458, 838
LpnPI	CCDG	8 cut(s)	367, 474, 546, 726, 807, 809, 883, 987
Lsp1109I	GCAGC	2 cut(s)	695, 955
LweI	GCATC	3 cut(s)	85, 568, 766
MaeI	CTAG	2 cut(s)	780, 842
MaeII	ACGT	2 cut(s)	142, 653
MaeIII	GTNAC	2 cut(s)	400, 853
MboII	GAAGA	5 cut(s)	57, 207, 293, 716, 947
MhlI	GDGCHC	1 cut(s)	925
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	3 cut(s)	245, 260, 625
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	8 cut(s)	56, 105, 163, 193, 304, 613, 971, 1015
Mox20I	TGGCCA	1 cut(s)	699
Mph1103I	ATGCAT	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	2 cut(s)	612, 738
MslI	CAYNNNNRTG	2 cut(s)	705, 995
Msp20I	TGGCCA	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	860
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	975
Mva1269I	GAATGC	2 cut(s)	443, 957
MwoI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 987, 1001
NciI	CCSGG	1 cut(s)	975
NcoI	CCATGG	2 cut(s)	847, 996
NdeI	CATATG	1 cut(s)	205
NlaIII	CATG	8 cut(s)	52, 63, 608, 683, 831, 851, 918, 1000
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	831
PaqCI	CACCTGC	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	981
PciI	ACATGT	1 cut(s)	827
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	2 cut(s)	443, 957
PfeI	GAWTC	3 cut(s)	212, 306, 471
PkrI	GCNGC	2 cut(s)	685, 970
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
Ppu21I	YACGTR	1 cut(s)	654
PscI	ACATGT	1 cut(s)	827
PspPI	GGNCC	4 cut(s)	43, 172, 313, 415
RsaI	GTAC	3 cut(s)	116, 652, 896
RsaNI	GTAC	3 cut(s)	115, 651, 895
RseI	CAYNNNNRTG	2 cut(s)	705, 995
SaqAI	TTAA	2 cut(s)	612, 738
SatI	GCNGC	2 cut(s)	684, 969
Sau96I	GGNCC	4 cut(s)	43, 172, 313, 415
ScaI	AGTACT	1 cut(s)	896
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	975
SduI	GDGCHC	1 cut(s)	925
SfaNI	GCATC	3 cut(s)	85, 568, 766
SinI	GGWCC	3 cut(s)	43, 172, 415
SmiMI	CAYNNNNRTG	2 cut(s)	705, 995
SmlI	CTYRAG	2 cut(s)	295, 737
SmoI	CTYRAG	2 cut(s)	295, 737
Sse9I	AATT	3 cut(s)	245, 260, 625
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	2 cut(s)	175, 858
SspMI	CTAG	2 cut(s)	780, 842
StuI	AGGCCT	1 cut(s)	981
StyD4I	CCNGG	1 cut(s)	973
StyI	CCWWGG	5 cut(s)	39, 418, 550, 847, 996
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	2 cut(s)	145, 656
TaqI	TCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	245, 260, 625
TatI	WGTACW	1 cut(s)	894
TfiI	GAWTC	3 cut(s)	212, 306, 471
Tru1I	TTAA	2 cut(s)	612, 738
Tru9I	TTAA	2 cut(s)	612, 738
TscAI	CASTG	4 cut(s)	295, 459, 622, 1021
TseI	GCWGC	2 cut(s)	683, 968
TspDTI	ATGAA	2 cut(s)	294, 366
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	4 cut(s)	295, 459, 622, 1021
Vha464I	CTTAAG	1 cut(s)	737
VneI	GTGCAC	1 cut(s)	921
VpaK11BI	GGWCC	3 cut(s)	43, 172, 415
XagI	CCTNNNNNAGG	1 cut(s)	737
XceI	RCATGY	1 cut(s)	831
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	780, 842
ZrmI	AGTACT	1 cut(s)	896
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.