Rmu_sc0001653.1_g000004

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001653.1
Physical Location & Seq
Reverse (-)
18502 .. 19639
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001653.1_g000004.1.cds

Sequence Viewer

Length: 999 bp
atggagttcatcaaccagatcaaatgtataagtttggccctgatcctcatgttgggggcttggtcttctgaagccacttctcgcactctccaagatgtgtcaatgtatgggagatatgaccaatggatggctcatcatggacgtgcttatagcagcattgatgagaaggagagtcgtttcaagatattcaaagaaaatgtggcgtttattgaatcttccaataactatgcaagcaaaacttacaaattaagtgtcaatcagtttgcagatctaacaaacgaagaattcacggccttgagcaatggattcaaggggcatgaatgttccacaaagaccacttccttcaggtatggaaatgtcacagtgccagctacaatggactggagaagcaaaggagctgtaactcccatcaaggatcaaggtcaatgcgtggcagcaatggaaggcattactcaacttacaacgggtaaactaatctcgttgtctgagcaagagctagttgattgtgacaccagtggtgaagatcaaggttgtgaaggtggtttgatggatgatgcctttgagtttatcaatcaaaatcacgggcttagtaccgaggtaaattatccctacaccggtgttgatggaacatgcaatgcccagaaggaagcaagtcatgccgcctcaataactggccatgaagacgttcctgcaaacagtgaaagtgcccttcttaaggccgttgcaagtcaacctatttcagttgccattgatgctagtggatctgatttccaattctattcaagtggcgtctttactggtacctgtggaacaagtttagaccatggtgttacagcagttggctacggtgtaagtgatgatgggacaaactactggttggtgaagaactcatggggtacacaatggggtgaagaagggtacataaggatgcaaagggatgtcgatgcagcggaaggcctttgcggcattgctatggcagcctcttaccccactgcatag

Protein Analysis

332

Amino Acids

35.94

Weight (kDa)

4.62

Isoelectric Point (pI)

19.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 800
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 1 cut(s) 127
AciI CCGC 3 cut(s) 660, 950, 963
AclWI GGATC 3 cut(s) 37, 423, 769
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 2 cut(s) 90, 328
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 4 cut(s) 592, 802, 898, 920
AfiI CCNNNNNNNGG 4 cut(s) 52, 127, 614, 715
AflII CTTAAG 1 cut(s) 713
AgeI ACCGGT 1 cut(s) 614
AgsI TTSAA 5 cut(s) 181, 190, 212, 310, 783
AjiI CACGTC 1 cut(s) 143
AluBI AGCT 3 cut(s) 371, 398, 496
AluI AGCT 3 cut(s) 371, 398, 496
AlwI GGATC 3 cut(s) 37, 423, 769
AoxI GGCC 5 cut(s) 36, 291, 673, 717, 955
ApeKI GCWGC 4 cut(s) 153, 434, 947, 977
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AsiGI ACCGGT 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 684
Asp718I GGTACC 1 cut(s) 800
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 530, 892, 920
BaeGI GKGCMC 1 cut(s) 709
BalI TGGCCA 1 cut(s) 675
BanI GGYRCC 1 cut(s) 800
BbsI GAAGAC 2 cut(s) 57, 687
BbvI GCAGC 4 cut(s) 165, 446, 959, 989
BccI CCATC 5 cut(s) 121, 416, 541, 617, 854
BceAI ACGGC 2 cut(s) 306, 704
BfaI CTAG 2 cut(s) 497, 756
BfrI CTTAAG 1 cut(s) 713
BglI GCCNNNNNGGC 1 cut(s) 963
BglII AGATCT 1 cut(s) 268
BisI GCNGC 6 cut(s) 154, 435, 660, 948, 964, 978
BlsI GCNGC 6 cut(s) 155, 436, 661, 949, 965, 979
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 802
BmsI GCATC 4 cut(s) 544, 742, 918, 934
BpiI GAAGAC 2 cut(s) 57, 687
BpmI CTGGAG 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 2 cut(s) 594, 823
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 127, 614, 715
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 5 cut(s) 386, 513, 676, 802, 878
Bse3DI GCAATG 4 cut(s) 307, 444, 640, 966
BseDI CCNNGG 2 cut(s) 594, 823
BseGI GGATG 4 cut(s) 132, 556, 933, 943
BseLI CCNNNNNNNGG 4 cut(s) 52, 127, 614, 715
BseMI GCAATG 4 cut(s) 307, 444, 640, 966
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 5 cut(s) 386, 513, 676, 802, 878
BseSI GKGCMC 1 cut(s) 709
BseXI GCAGC 4 cut(s) 165, 446, 959, 989
BshFI GGCC 5 cut(s) 38, 293, 675, 719, 957
BshNI GGYRCC 1 cut(s) 800
BshTI ACCGGT 1 cut(s) 614
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 4 cut(s) 52, 127, 614, 715
BsmFI GGGAC 1 cut(s) 877
BsnI GGCC 5 cut(s) 38, 293, 675, 719, 957
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 6 cut(s) 18, 42, 268, 415, 523, 761
Bsp19I CCATGG 1 cut(s) 823
BspACI CCGC 3 cut(s) 660, 950, 963
BspANI GGCC 5 cut(s) 38, 293, 675, 719, 957
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 802
BspPI GGATC 3 cut(s) 37, 423, 769
BspT107I GGYRCC 1 cut(s) 800
BspTI CTTAAG 1 cut(s) 713
BsrDI GCAATG 4 cut(s) 307, 444, 640, 966
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 5 cut(s) 386, 513, 676, 802, 878
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 2 cut(s) 594, 823
BssMI GATC 6 cut(s) 18, 42, 268, 415, 523, 761
BssNI GRCGYC 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 823
Bst4CI ACNGT 3 cut(s) 364, 698, 848
BstACI GRCGYC 1 cut(s) 789
BstAFI CTTAAG 1 cut(s) 713
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 2 cut(s) 232, 369
BstDEI CTNAG 2 cut(s) 486, 587
BstDSI CCRYGG 1 cut(s) 823
BstENI CCTNNNNNAGG 1 cut(s) 713
BstF5I GGATG 4 cut(s) 132, 556, 933, 943
BstKTI GATC 6 cut(s) 21, 45, 271, 418, 526, 764
BstMBI GATC 6 cut(s) 18, 42, 268, 415, 523, 761
BstMWI GCNNNNNNNGC 4 cut(s) 656, 752, 963, 977
BstNSI RCATGY 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 709
BstV1I GCAGC 4 cut(s) 165, 446, 959, 989
BstV2I GAAGAC 2 cut(s) 57, 687
BstX2I RGATCY 2 cut(s) 268, 761
BstYI RGATCY 2 cut(s) 268, 761
BsuRI GGCC 5 cut(s) 38, 293, 675, 719, 957
BtgI CCRYGG 1 cut(s) 823
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 4 cut(s) 132, 556, 933, 943
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 4 cut(s) 369, 520, 703, 990
Cac8I GCNNGC 2 cut(s) 232, 369
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 1 cut(s) 778
Csp6I GTAC 4 cut(s) 591, 801, 897, 919
CspAI ACCGGT 1 cut(s) 614
CviAII CATG 8 cut(s) 49, 137, 317, 630, 656, 677, 824, 891
CviQI GTAC 4 cut(s) 591, 801, 897, 919
DdeI CTNAG 2 cut(s) 486, 587
DpnI GATC 6 cut(s) 20, 44, 270, 417, 525, 763
DpnII GATC 6 cut(s) 18, 42, 268, 415, 523, 761
EaeI YGGCCR 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 823
Eco147I AGGCCT 1 cut(s) 957
Eco57I CTGAAG 2 cut(s) 90, 328
EcoNI CCTNNNNNAGG 1 cut(s) 713
EcoRI GAATTC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 823
FaeI CATG 8 cut(s) 52, 140, 320, 633, 659, 680, 827, 894
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FaqI GGGAC 1 cut(s) 877
FatI CATG 8 cut(s) 48, 136, 316, 629, 655, 676, 823, 890
Fnu4HI GCNGC 6 cut(s) 154, 435, 660, 948, 964, 978
FokI GGATG 4 cut(s) 139, 563, 940, 950
Fsp4HI GCNGC 6 cut(s) 154, 435, 660, 948, 964, 978
FspBI CTAG 2 cut(s) 497, 756
GluI GCNGC 6 cut(s) 154, 435, 660, 948, 964, 978
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 5 cut(s) 38, 293, 675, 719, 957
HapII CCGG 1 cut(s) 615
HgaI GACGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 8 cut(s) 52, 140, 320, 633, 659, 680, 827, 894
HincII GTYRAC 1 cut(s) 731
HindII GTYRAC 1 cut(s) 731
HinfI GANTC 3 cut(s) 172, 212, 306
HpaII CCGG 1 cut(s) 615
HphI GGTGA 3 cut(s) 530, 892, 920
Hpy166II GTNNAC 3 cut(s) 470, 731, 899
Hpy188I TCNGA 3 cut(s) 70, 487, 766
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 3 cut(s) 470, 731, 899
HpyAV CCTTC 8 cut(s) 160, 352, 437, 530, 637, 719, 908, 947
HpyCH4III ACNGT 3 cut(s) 364, 698, 848
HpyCH4IV ACGT 2 cut(s) 142, 684
HpyCH4V TGCA 8 cut(s) 230, 266, 633, 692, 725, 931, 947, 995
HpyF10VI GCNNNNNNNGC 4 cut(s) 656, 752, 963, 977
HpyF3I CTNAG 2 cut(s) 486, 587
HpySE526I ACGT 2 cut(s) 142, 684
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 8 cut(s) 52, 140, 320, 633, 659, 680, 827, 894
KpnI GGTACC 1 cut(s) 804
Kzo9I GATC 6 cut(s) 18, 42, 268, 415, 523, 761
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 4 cut(s) 165, 446, 959, 989
LweI GCATC 4 cut(s) 544, 742, 918, 934
MaeI CTAG 2 cut(s) 497, 756
MaeII ACGT 2 cut(s) 142, 684
MaeIII GTNAC 4 cut(s) 358, 400, 506, 829
MalI GATC 6 cut(s) 20, 44, 270, 417, 525, 763
MboI GATC 6 cut(s) 18, 42, 268, 415, 523, 761
MboII GAAGA 7 cut(s) 57, 207, 293, 533, 692, 895, 923
MflI RGATCY 2 cut(s) 268, 761
MhlI GDGCHC 1 cut(s) 709
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 4 cut(s) 245, 284, 601, 773
MluNI TGGCCA 1 cut(s) 675
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 4 cut(s) 56, 589, 673, 991
Mox20I TGGCCA 1 cut(s) 675
MroXI GAANNNNTTC 1 cut(s) 684
MscI TGGCCA 1 cut(s) 675
MseI TTAA 2 cut(s) 248, 714
MslI CAYNNNNRTG 3 cut(s) 141, 926, 971
Msp20I TGGCCA 1 cut(s) 675
MspA1I CMGCKG 1 cut(s) 950
MspCI CTTAAG 1 cut(s) 713
MspI CCGG 1 cut(s) 615
MwoI GCNNNNNNNGC 4 cut(s) 656, 752, 963, 977
NcoI CCATGG 1 cut(s) 823
NdeII GATC 6 cut(s) 18, 42, 268, 415, 523, 761
NlaIII CATG 8 cut(s) 52, 140, 320, 633, 659, 680, 827, 894
NlaIV GGNNCC 1 cut(s) 802
NmuCI GTSAC 2 cut(s) 358, 506
NspI RCATGY 1 cut(s) 633
PceI AGGCCT 1 cut(s) 957
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 2 cut(s) 212, 306
PflMI CCANNNNNTGG 1 cut(s) 127
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 6 cut(s) 155, 436, 661, 949, 965, 979
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 802
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 2 cut(s) 268, 761
RsaI GTAC 4 cut(s) 592, 802, 898, 920
RsaNI GTAC 4 cut(s) 591, 801, 897, 919
RseI CAYNNNNRTG 3 cut(s) 141, 926, 971
SaqAI TTAA 2 cut(s) 248, 714
SatI GCNGC 6 cut(s) 154, 435, 660, 948, 964, 978
Sau3AI GATC 6 cut(s) 18, 42, 268, 415, 523, 761
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 709
SfaNI GCATC 4 cut(s) 544, 742, 918, 934
SgrAI CRCCGGYG 1 cut(s) 614
SmiMI CAYNNNNRTG 3 cut(s) 141, 926, 971
SmlI CTYRAG 2 cut(s) 295, 713
SmoI CTYRAG 2 cut(s) 295, 713
Sse9I AATT 4 cut(s) 245, 284, 601, 773
SseBI AGGCCT 1 cut(s) 957
SsiI CCGC 3 cut(s) 660, 950, 963
SspMI CTAG 2 cut(s) 497, 756
StuI AGGCCT 1 cut(s) 957
StyI CCWWGG 1 cut(s) 823
TaaI ACNGT 3 cut(s) 364, 698, 848
TaiI ACGT 2 cut(s) 145, 687
TaqI TCGA 1 cut(s) 942
TasI AATT 4 cut(s) 245, 284, 601, 773
TauI GCSGC 2 cut(s) 662, 966
TfiI GAWTC 2 cut(s) 212, 306
Tru1I TTAA 2 cut(s) 248, 714
Tru9I TTAA 2 cut(s) 248, 714
TscAI CASTG 4 cut(s) 369, 520, 703, 997
TseFI GTSAC 2 cut(s) 358, 506
TseI GCWGC 4 cut(s) 153, 434, 947, 977
Tsp45I GTSAC 2 cut(s) 358, 506
TspDTI ATGAA 2 cut(s) 333, 693
TspRI CASTG 4 cut(s) 369, 520, 703, 997
Van91I CCANNNNNTGG 1 cut(s) 127
Vha464I CTTAAG 1 cut(s) 713
XagI CCTNNNNNAGG 1 cut(s) 713
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 2 cut(s) 497, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.