Rh2DG365000

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
51425502 .. 51425942
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG365000.1

Sequence Viewer

Length: 441 bp
ATGGAGTTCACCAACCAACTCTGCAACTGTATCTGTTTGGCCTTGATCCTCATGCTGGGGGTTTGGTCTTCTGAGGCCACTTCTCGCAATCTCCAAGATGCATCAATGTATGAGAGGTACGAGCAATGGATGGCTCATTATGGACGTGTTTATAATGACATGACCGAAAAGGAGGACCGCTTCAAAATATTCAAGGACAATGTGGCATTTATAGAATCTTCCAATAATGCAGGAAACAAACTTTACAAATTGAGTGTGAATCAATTTGCAGACCTTACGAATGAAGAATTCACTACTGCAAGAAATCGGTTCAAGGGGCATGAGTGCTCCACAAAGACCACTACTTTCAAGTATGAAAATGCTAGCGTGCCAGCTACAATGGACTGGAGGCGGAAAGGAGCTGTAACTCCCATCAAGGACCAAGGCCAATGTGGTATGTAG

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

6.72

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 40 - 97 2.3e-19 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AciI CCGC 2 cut(s) 178, 391
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 55
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 4 cut(s) 184, 193, 313, 349
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 2 cut(s) 374, 401
AluI AGCT 2 cut(s) 374, 401
Alw21I GWGCWC 1 cut(s) 329
AlwI GGATC 1 cut(s) 40
AoxI GGCC 3 cut(s) 39, 75, 424
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 175, 418
AsuNHI GCTAGC 1 cut(s) 362
AvaII GGWCC 2 cut(s) 175, 418
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 329
BccI CCATC 2 cut(s) 124, 419
BfaI CTAG 1 cut(s) 363
Bme18I GGWCC 2 cut(s) 175, 418
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 175, 418
BmsI GCATC 2 cut(s) 88, 110
BmtI GCTAGC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 421
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 389
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 3 cut(s) 41, 77, 426
BsiHKAI GWGCWC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 3 cut(s) 41, 77, 426
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 2 cut(s) 178, 391
BspANI GGCC 3 cut(s) 41, 77, 426
BspCNI CTCAG 1 cut(s) 64
BspOI GCTAGC 1 cut(s) 366
BspPI GGATC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 131
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 421
Bst4CI ACNGT 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 364, 368, 372
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 3 cut(s) 41, 77, 426
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 364, 368, 372
Cfr13I GGNCC 2 cut(s) 175, 418
Csp6I GTAC 1 cut(s) 118
CviAII CATG 3 cut(s) 52, 160, 320
CviJI RGCY 6 cut(s) 41, 77, 134, 374, 401, 426
CviKI_1 RGCY 6 cut(s) 41, 77, 134, 374, 401, 426
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 175, 418
EcoRI GAATTC 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 3 cut(s) 55, 163, 323
FaiI YATR 9 cut(s) 53, 111, 141, 153, 161, 212, 321, 354, 437
FatI CATG 3 cut(s) 51, 159, 319
FokI GGATG 1 cut(s) 142
FspBI CTAG 1 cut(s) 363
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 3 cut(s) 41, 77, 426
Hin1II CATG 3 cut(s) 55, 163, 323
HinfI GANTC 2 cut(s) 215, 259
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 5 cut(s) 24, 101, 230, 269, 299
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 3 cut(s) 55, 163, 323
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 332, 398
LpnPI CCDG 4 cut(s) 41, 216, 370, 384
LweI GCATC 2 cut(s) 88, 110
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 403
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 60, 210, 296
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 3 cut(s) 248, 263, 287
MnlI CCTC 5 cut(s) 59, 67, 108, 166, 381
Mph1103I ATGCAT 1 cut(s) 103
NdeII GATC 1 cut(s) 45
NheI GCTAGC 1 cut(s) 362
NlaIII CATG 3 cut(s) 55, 163, 323
NsiI ATGCAT 1 cut(s) 103
PfeI GAWTC 2 cut(s) 215, 259
PsiI TTATAA 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 175, 418
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 2 cut(s) 175, 418
SduI GDGCHC 1 cut(s) 329
SetI ASST 5 cut(s) 119, 148, 276, 376, 403
SfaNI GCATC 2 cut(s) 88, 110
SinI GGWCC 2 cut(s) 175, 418
Sse9I AATT 3 cut(s) 248, 263, 287
SsiI CCGC 2 cut(s) 178, 391
SspI AATATT 1 cut(s) 189
SspMI CTAG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 148
TaqII GACCGA 1 cut(s) 179
TasI AATT 3 cut(s) 248, 263, 287
TfiI GAWTC 2 cut(s) 215, 259
TspDTI ATGAA 2 cut(s) 297, 369
VpaK11BI GGWCC 2 cut(s) 175, 418
XapI RAATTY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XspI CTAG 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.