FvH4_3g07770

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013800
Physical Location & Seq
Reverse (-)
4564334 .. 4567388
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07770.t1

Sequence Viewer

Length: 564 bp
ATGTCTGGAGATCATAGACGAAAAGATTCCGTCGAGGCCTCCTCCTCACGATCCACTAACGCCGATCATCATCATCAGCAGCAGCAGCAACCAAACCCTCCACCGCTCAGCCGCTACGAGTCTCAGAAGCGCCGTGACTGGAACACCTTCGGTCAGTACCTCAAGAACCAGACCCCTCCAGTTCCTATGTCCCATTGCCAGTTCAACCACGTCCTCGACTTCCTTCGCTACCTCGACCAGTTTGGAAAGACCAAGGTGCACTTACACTGTTGTGTCTTTTTTGGGCAGCCTGACCCTCCTGCTCCTTGCACCTGCCCACTCAGGCAGGCTTGGGGAAGCCTCGACGCCCTGATAGGGCGCCTCAGGGCAGCATATGAGGAACATGGGGGAGCACCGGAGACCAATCCTTTCGGTAACGGAGCTATTCGGGTTTACCTGAGGGAAGTGAAGGAGTGCCAAGCTAAGGCGAGAGGGATCCCGTACAAGAAGAAAAAGAAGAGGAGGAACAATCAGCTCAAGGCGATTAGCGATGAGGCTAAGGGTTTGAAGCAAATCGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF640

Protein Analysis

188

Amino Acids

21.32

Weight (kDa)

9.69

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 28 - 151 3.1e-65 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18610
fragaria_vesca FvH4_3g07770
malus_domestica MD05G1300800.v1.1 MD10G1279800.v1.1
prunus_persica Prupe.4G061700_v2.0.a1
pyrus_communis pycom05g27870 pycom10g23350
rosa_chinensis RchiOBHm_Chr5g0010811
rosa_laevigata RLG00000031783
rosa_multiflora Rmu_sc0000109.1_g000015
rosa_rugosa Rorug04G0452700
rosa_samantha Rh5AG085000 Rh5BG079700 Rh5CG092400 Rh5DG079900
rosa_wichuraiana Rw0G017960 Rw0G022240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 357
AccBSI CCGCTC 1 cut(s) 106
AciI CCGC 2 cut(s) 104, 112
AclWI GGATC 3 cut(s) 45, 469, 482
AcyI GRCGYC 2 cut(s) 345, 358
AfaI GTAC 2 cut(s) 158, 482
AfiI CCNNNNNNNGG 2 cut(s) 354, 463
AgsI TTSAA 2 cut(s) 205, 547
AjiI CACGTC 1 cut(s) 211
AleI CACNNNNGTG 1 cut(s) 270
AluBI AGCT 3 cut(s) 422, 461, 514
AluI AGCT 3 cut(s) 422, 461, 514
Alw21I GWGCWC 2 cut(s) 261, 394
Alw26I GTCTC 2 cut(s) 126, 392
Alw44I GTGCAC 1 cut(s) 257
AlwI GGATC 3 cut(s) 45, 469, 482
AoxI GGCC 1 cut(s) 36
ApaLI GTGCAC 1 cut(s) 257
ApeKI GCWGC 5 cut(s) 79, 82, 85, 286, 368
Asp700I GAANNNNTTC 2 cut(s) 25, 146
AspLEI GCGC 2 cut(s) 132, 360
AxyI CCTNAGG 2 cut(s) 362, 437
BaeGI GKGCMC 1 cut(s) 261
BamHI GGATCC 1 cut(s) 474
BanI GGYRCC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 261, 394
BbvI GCAGC 5 cut(s) 91, 94, 97, 298, 380
BceAI ACGGC 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 126, 392
BfoI RGCGCY 2 cut(s) 133, 361
BfuAI ACCTGC 1 cut(s) 320
BisI GCNGC 6 cut(s) 80, 83, 86, 112, 287, 369
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 6 cut(s) 81, 84, 87, 113, 288, 370
BmgBI CACGTC 1 cut(s) 211
BmiI GGNNCC 2 cut(s) 359, 476
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 2 cut(s) 27, 162
Bpu10I CCTNAGC 2 cut(s) 462, 537
Bpu1102I GCTNAGC 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 146, 500
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 2 cut(s) 345, 358
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 463
Bse1I ACTGG 4 cut(s) 143, 179, 199, 238
Bse21I CCTNAGG 2 cut(s) 362, 437
Bse3DI GCAATG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 354, 463
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 5 cut(s) 121, 137, 334, 376, 428
BseNI ACTGG 4 cut(s) 143, 179, 199, 238
BseRI GAGGAG 3 cut(s) 31, 34, 514
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 5 cut(s) 91, 94, 97, 298, 380
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 261, 394
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 354, 463
BsmAI GTCTC 2 cut(s) 126, 392
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 261, 394
Bsp143I GATC 4 cut(s) 10, 50, 64, 474
Bsp1720I GCTNAGC 1 cut(s) 107
BspACI CCGC 2 cut(s) 104, 112
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 5 cut(s) 120, 136, 333, 375, 429
BspLI GGNNCC 2 cut(s) 359, 476
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 3 cut(s) 45, 469, 482
BspT107I GGYRCC 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 193
BsrI ACTGG 4 cut(s) 143, 179, 199, 238
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 4 cut(s) 10, 50, 64, 474
BssNI GRCGYC 2 cut(s) 345, 358
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 491
BstACI GRCGYC 2 cut(s) 345, 358
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 7 cut(s) 107, 123, 320, 362, 437, 462, 537
BstH2I RGCGCY 2 cut(s) 133, 361
BstHHI GCGC 2 cut(s) 132, 360
BstKTI GATC 4 cut(s) 13, 53, 67, 477
BstMAI GTCTC 2 cut(s) 126, 392
BstMBI GATC 4 cut(s) 10, 50, 64, 474
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 5 cut(s) 91, 94, 97, 298, 380
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
Bsu36I CCTNAGG 2 cut(s) 362, 437
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 543
BtrI CACGTC 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 265
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 327
CfoI GCGC 2 cut(s) 132, 360
CseI GACGC 1 cut(s) 353
Csp6I GTAC 2 cut(s) 157, 481
CviAII CATG 1 cut(s) 383
CviJI RGCY 9 cut(s) 38, 111, 289, 329, 339, 422, 461, 514, 536
CviKI_1 RGCY 9 cut(s) 38, 111, 289, 329, 339, 422, 461, 514, 536
CviQI GTAC 2 cut(s) 157, 481
DdeI CTNAG 7 cut(s) 107, 123, 320, 362, 437, 462, 537
DinI GGCGCC 1 cut(s) 359
DpnI GATC 4 cut(s) 12, 52, 66, 476
DpnII GATC 4 cut(s) 10, 50, 64, 474
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 392
Eco81I CCTNAGG 2 cut(s) 362, 437
EcoT14I CCWWGG 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 359
EheI GGCGCC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 1 cut(s) 386
FaiI YATR 5 cut(s) 15, 188, 373, 375, 384
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 175
FatI CATG 1 cut(s) 382
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 6 cut(s) 80, 83, 86, 112, 287, 369
Fsp4HI GCNGC 6 cut(s) 80, 83, 86, 112, 287, 369
GlaI GCGC 2 cut(s) 131, 359
GluI GCNGC 6 cut(s) 80, 83, 86, 112, 287, 369
GsuI CTGGAG 2 cut(s) 27, 162
HaeII RGCGCY 2 cut(s) 133, 361
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 395
HgaI GACGC 1 cut(s) 353
HhaI GCGC 2 cut(s) 132, 360
Hin1I GRCGYC 2 cut(s) 345, 358
Hin1II CATG 1 cut(s) 386
Hin6I GCGC 2 cut(s) 130, 358
HinP1I GCGC 2 cut(s) 130, 358
HinfI GANTC 2 cut(s) 26, 119
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 259, 433
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 4 cut(s) 6, 48, 163, 561
Hpy8I GTNNAC 2 cut(s) 259, 433
Hpy99I CGWCG 2 cut(s) 35, 347
HpyAV CCTTC 3 cut(s) 157, 233, 442
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 259, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 7 cut(s) 107, 123, 320, 362, 437, 462, 537
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 2 cut(s) 345, 358
Hsp92II CATG 1 cut(s) 386
HspAI GCGC 2 cut(s) 130, 358
KasI GGCGCC 1 cut(s) 357
Kzo9I GATC 4 cut(s) 10, 50, 64, 474
LmnI GCTCC 3 cut(s) 307, 389, 419
Lsp1109I GCAGC 5 cut(s) 91, 94, 97, 298, 380
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 134, 413
MalI GATC 4 cut(s) 12, 52, 66, 476
MbiI CCGCTC 1 cut(s) 106
MboI GATC 4 cut(s) 10, 50, 64, 474
MboII GAAGA 2 cut(s) 499, 508
MflI RGATCY 1 cut(s) 474
MhlI GDGCHC 2 cut(s) 261, 394
Mly113I GGCGCC 1 cut(s) 358
MlyI GAGTC 1 cut(s) 128
MroXI GAANNNNTTC 2 cut(s) 25, 146
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 85
NarI GGCGCC 1 cut(s) 358
NdeI CATATG 1 cut(s) 373
NdeII GATC 4 cut(s) 10, 50, 64, 474
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 2 cut(s) 359, 476
NmuCI GTSAC 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 320
PceI AGGCCT 1 cut(s) 38
PdmI GAANNNNTTC 2 cut(s) 25, 146
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 6 cut(s) 81, 84, 87, 113, 288, 370
PleI GAGTC 1 cut(s) 127
PluTI GGCGCC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 359, 476
PsuI RGATCY 1 cut(s) 474
RsaI GTAC 2 cut(s) 158, 482
RsaNI GTAC 2 cut(s) 157, 481
RseI CAYNNNNRTG 1 cut(s) 270
SatI GCNGC 6 cut(s) 80, 83, 86, 112, 287, 369
Sau3AI GATC 4 cut(s) 10, 50, 64, 474
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 2 cut(s) 261, 394
SfoI GGCGCC 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 2 cut(s) 161, 515
SmoI CTYRAG 2 cut(s) 161, 515
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 2 cut(s) 104, 112
SspDI GGCGCC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 38
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 213
TaqI TCGA 4 cut(s) 33, 216, 234, 342
TaqII GACCGA 1 cut(s) 140
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 5 cut(s) 79, 82, 85, 286, 368
Tsp45I GTSAC 1 cut(s) 134
TspGWI ACGGA 2 cut(s) 19, 432
TspRI CASTG 1 cut(s) 272
VneI GTGCAC 1 cut(s) 257
XmnI GAANNNNTTC 2 cut(s) 25, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.