Prupe.4G061700_v2.0.a1

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013800
Physical Location & Seq
Forward (+)
2949690 .. 2953428
3739 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G061700.1

Sequence Viewer

Length: 564 bp
ATGTCTGCACCTCATCATGATTACAGTCGACGAAAAGATTCCAACTCCATAGAGGGCTCCTCCTCCTCCTCCCGACCCAATCAACAACAAGCACCTCAACCTCTTAGCCGATATGAGTCTCAGAAACGCCGAGACTGGAACACTTTTGGCCAGTACTTGAAGAACCAAACACCCCCAGTCTCTCTCTCTCAATGCAACTGTAACCATGTCCTCGATTTCCTTCGCTACTTGGACCAGTTCGGGAAGACTAAGGTTCACTTACACGGGTGTGTCTTCTTCGGGCAGCCTGACCCTCCTGCCCCGTGCACGTGCCCGCTTAAGCAGGCATGGGGCAGCCTGGACGCGCTGATCGGCCGCCTCCGTGCGGCGTATGAGGAGCACGGAGGGTCGCCTGAGACGAACCCTTTTGGGAATGGAGCTATTCGGGTTTACTTACGTGAAGTGAAGGAGTGTCAGGCTAAGGCAAGAGGGATTCCATACAAGAAGAAGAAGAAGAAGAGAAACGGTCAGCTTAAGGCAATTAACGACGAGGCTAATAAGGGTTTGAAGCAGATCACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF640

Protein Analysis

188

Amino Acids

21.07

Weight (kDa)

9.69

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18610
fragaria_vesca FvH4_3g07770
malus_domestica MD05G1300800.v1.1 MD10G1279800.v1.1
prunus_persica Prupe.4G061700_v2.0.a1
pyrus_communis pycom05g27870 pycom10g23350
rosa_chinensis RchiOBHm_Chr5g0010811
rosa_laevigata RLG00000031783
rosa_multiflora Rmu_sc0000109.1_g000015
rosa_rugosa Rorug04G0452700
rosa_samantha Rh5AG085000 Rh5BG079700 Rh5CG092400 Rh5DG079900
rosa_wichuraiana Rw0G017960 Rw0G022240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AccII CGCG 1 cut(s) 344
AciI CCGC 3 cut(s) 314, 355, 365
AcoI YGGCCR 2 cut(s) 148, 352
AcvI CACGTG 1 cut(s) 309
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 364
AflII CTTAAG 2 cut(s) 317, 512
AgsI TTSAA 2 cut(s) 160, 547
AjnI CCWGG 1 cut(s) 336
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 2 cut(s) 419, 511
AluI AGCT 2 cut(s) 419, 511
Alw21I GWGCWC 2 cut(s) 308, 381
Alw26I GTCTC 4 cut(s) 123, 126, 184, 389
Alw44I GTGCAC 1 cut(s) 304
AoxI GGCC 2 cut(s) 148, 352
ApaLI GTGCAC 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 283, 333
Asp700I GAANNNNTTC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 232
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 2 cut(s) 308, 314
BalI TGGCCA 1 cut(s) 150
BanII GRGCYC 1 cut(s) 59
BbrPI CACGTG 1 cut(s) 309
BbsI GAAGAC 2 cut(s) 251, 265
Bbv12I GWGCWC 2 cut(s) 308, 381
BbvI GCAGC 2 cut(s) 295, 345
BciT130I CCWGG 1 cut(s) 338
BcoDI GTCTC 4 cut(s) 123, 126, 184, 389
BfrI CTTAAG 2 cut(s) 317, 512
BisI GCNGC 4 cut(s) 284, 334, 355, 366
BlsI GCNGC 4 cut(s) 285, 335, 356, 367
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 338
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 251, 265
BplI GAGNNNNNCTC 2 cut(s) 44, 76
Bpu10I CCTNAGC 1 cut(s) 459
BsaAI YACGTR 2 cut(s) 309, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 4 cut(s) 140, 151, 176, 235
BseBI CCWGG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 134, 384
BseNI ACTGG 4 cut(s) 140, 151, 176, 235
BseRI GAGGAG 5 cut(s) 49, 52, 55, 58, 389
BseSI GKGCMC 2 cut(s) 308, 314
BseX3I CGGCCG 1 cut(s) 352
BseXI GCAGC 2 cut(s) 295, 345
Bsh1236I CGCG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 2 cut(s) 150, 354
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 2 cut(s) 308, 381
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 4 cut(s) 123, 126, 184, 389
BsmBI CGTCTC 1 cut(s) 389
BsnI GGCC 2 cut(s) 150, 354
Bsp1286I GDGCHC 4 cut(s) 59, 308, 314, 381
Bsp143I GATC 2 cut(s) 348, 552
BspACI CCGC 3 cut(s) 314, 355, 365
BspANI GGCC 2 cut(s) 150, 354
BspCNI CTCAG 2 cut(s) 133, 385
BspFNI CGCG 1 cut(s) 344
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 58
BspTI CTTAAG 2 cut(s) 317, 512
BsrI ACTGG 4 cut(s) 140, 151, 176, 235
BssMI GATC 2 cut(s) 348, 552
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 26, 200, 506
Bst6I CTCTTC 1 cut(s) 491
BstAFI CTTAAG 2 cut(s) 317, 512
BstBAI YACGTR 2 cut(s) 309, 437
BstC8I GCNNGC 2 cut(s) 314, 324
BstDEI CTNAG 5 cut(s) 104, 120, 249, 393, 459
BstFNI CGCG 1 cut(s) 344
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 2 cut(s) 351, 555
BstMAI GTCTC 4 cut(s) 123, 126, 184, 389
BstMBI GATC 2 cut(s) 348, 552
BstMCI CGRYCG 1 cut(s) 355
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstSLI GKGCMC 2 cut(s) 308, 314
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 295, 345
BstV2I GAAGAC 2 cut(s) 251, 265
BstZI CGGCCG 1 cut(s) 352
BsuRI GGCC 2 cut(s) 150, 354
Cac8I GCNNGC 2 cut(s) 314, 324
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 17, 206, 327
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 5 cut(s) 104, 120, 249, 393, 459
DpnI GATC 2 cut(s) 350, 554
DpnII GATC 2 cut(s) 348, 552
EaeI YGGCCR 2 cut(s) 148, 352
EagI CGGCCG 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
EclXI CGGCCG 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 232
Eco52I CGGCCG 1 cut(s) 352
Eco72I CACGTG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 3 cut(s) 20, 209, 330
FaiI YATR 7 cut(s) 18, 50, 114, 207, 328, 372, 478
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 3 cut(s) 16, 205, 326
FauI CCCGC 1 cut(s) 321
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 284, 334, 355, 366
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 4 cut(s) 284, 334, 355, 366
GlaI GCGC 1 cut(s) 345
GluI GCNGC 4 cut(s) 284, 334, 355, 366
HaeIII GGCC 2 cut(s) 150, 354
HgaI GACGC 1 cut(s) 350
HhaI GCGC 1 cut(s) 346
Hin1II CATG 3 cut(s) 20, 209, 330
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 3 cut(s) 38, 116, 472
Hpy166II GTNNAC 4 cut(s) 29, 256, 306, 430
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 17, 72, 241
Hpy8I GTNNAC 4 cut(s) 29, 256, 306, 430
Hpy99I CGWCG 2 cut(s) 33, 530
HpyAV CCTTC 2 cut(s) 230, 439
HpyCH4III ACNGT 3 cut(s) 26, 200, 506
HpyCH4IV ACGT 2 cut(s) 308, 436
HpyCH4V TGCA 3 cut(s) 8, 195, 306
HpyF3I CTNAG 5 cut(s) 104, 120, 249, 393, 459
HpySE526I ACGT 2 cut(s) 308, 436
Hsp92II CATG 3 cut(s) 20, 209, 330
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 2 cut(s) 348, 552
LmnI GCTCC 3 cut(s) 62, 376, 416
Lsp1109I GCAGC 2 cut(s) 295, 345
MaeII ACGT 2 cut(s) 308, 436
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 350, 554
MboI GATC 2 cut(s) 348, 552
MboII GAAGA 9 cut(s) 172, 256, 265, 268, 496, 499, 502, 505, 508
MhlI GDGCHC 4 cut(s) 59, 308, 314, 381
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 1 cut(s) 519
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 66
Mox20I TGGCCA 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 37
MscI TGGCCA 1 cut(s) 150
MseI TTAA 4 cut(s) 318, 513, 522, 562
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 150
MspCI CTTAAG 2 cut(s) 317, 512
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 344
NdeII GATC 2 cut(s) 348, 552
NlaIII CATG 3 cut(s) 20, 209, 330
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 267
PagI TCATGA 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 38, 472
PkrI GCNGC 4 cut(s) 285, 335, 356, 367
PleI GAGTC 1 cut(s) 124
PmaCI CACGTG 1 cut(s) 309
PmlI CACGTG 1 cut(s) 309
PpsI GAGTC 1 cut(s) 124
Ppu21I YACGTR 2 cut(s) 309, 437
Psp6I CCWGG 1 cut(s) 336
PspCI CACGTG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 267
SalI GTCGAC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 318, 513, 522, 562
SatI GCNGC 4 cut(s) 284, 334, 355, 366
Sau3AI GATC 2 cut(s) 348, 552
Sau96I GGNCC 1 cut(s) 232
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 4 cut(s) 59, 308, 314, 381
SetI ASST 8 cut(s) 13, 97, 103, 255, 311, 421, 439, 513
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 317, 512
SmoI CTYRAG 2 cut(s) 317, 512
Sse9I AATT 1 cut(s) 519
SsiI CCGC 3 cut(s) 314, 355, 365
StyD4I CCNGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 26, 200, 506
TaiI ACGT 2 cut(s) 311, 439
TaqI TCGA 2 cut(s) 28, 213
TasI AATT 1 cut(s) 519
TatI WGTACW 1 cut(s) 153
TauI GCSGC 2 cut(s) 357, 368
TfiI GAWTC 2 cut(s) 38, 472
Tru1I TTAA 4 cut(s) 318, 513, 522, 562
Tru9I TTAA 4 cut(s) 318, 513, 522, 562
TseI GCWGC 2 cut(s) 283, 333
TspGWI ACGGA 2 cut(s) 350, 396
Vha464I CTTAAG 2 cut(s) 317, 512
VneI GTGCAC 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 37
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.