Rh5CG092400

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013800
Physical Location & Seq
Forward (+)
7290520 .. 7291077
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG092400.1

Sequence Viewer

Length: 558 bp
ATGTCTGGAGATCATAGACGAAAAGATTCCATCGAAGCCTCCTCCTCACGATCCACTAACGCCGATCATCAGCAGCAGCAGCAACAAAACCCTCCACCGCTCAGCCGCTACGAGTCTCAGAAGCGCCGGGACTGGAACACCTTCGGCCAGTACCTCAAGAACCAGACCCCTCCGGTTTCCATGTCCCATTGCCAGTTCAACCACGTCCTCGACTTCCTTCGCTACCTCGACCAGTTTGGAAAGACCAAGGTGCACTTACATGGTTGTGTCTTTTTCGGGCAGCCCGACCCTCCTGCCCCTTGCACCTGCCCGCTCCGGCAGGCCTGGGGCAGCCTCGACGCGCTGATCGGGCGCCTCAGGGCAGCGTATGAGGAGCACGGAGGAGCACCGGAGACCAACCCTTTCGGTAACGGAGCTATTCGGCTTTACCTGAGGGAAGTGAAGGAGTGCCAAGCTAAGGCGAGAGGGATTCCATACAAGAAGAAAAAGAAGAAGAGGAACAATCAGCTCAAGGCGATTAGTGATGAGGCTAAGGGTTTGAAGCAGATCACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF640

Protein Analysis

185

Amino Acids

21.05

Weight (kDa)

9.73

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 25 - 149 7.7e-66 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18610
fragaria_vesca FvH4_3g07770
malus_domestica MD05G1300800.v1.1 MD10G1279800.v1.1
prunus_persica Prupe.4G061700_v2.0.a1
pyrus_communis pycom05g27870 pycom10g23350
rosa_chinensis RchiOBHm_Chr5g0010811
rosa_laevigata RLG00000031783
rosa_multiflora Rmu_sc0000109.1_g000015
rosa_rugosa Rorug04G0452700
rosa_samantha Rh5AG085000 Rh5BG079700 Rh5CG092400 Rh5DG079900
rosa_wichuraiana Rw0G017960 Rw0G022240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 351
AccBSI CCGCTC 2 cut(s) 100, 313
AccII CGCG 1 cut(s) 341
AciI CCGC 3 cut(s) 98, 106, 311
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 352
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 2 cut(s) 199, 541
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 3 cut(s) 416, 455, 508
AluI AGCT 3 cut(s) 416, 455, 508
Alw21I GWGCWC 3 cut(s) 255, 378, 388
Alw26I GTCTC 2 cut(s) 120, 386
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 1 cut(s) 45
AoxI GGCC 2 cut(s) 145, 321
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 6 cut(s) 73, 76, 79, 280, 330, 362
Asp700I GAANNNNTTC 2 cut(s) 25, 140
AspLEI GCGC 3 cut(s) 126, 343, 354
AsuC2I CCSGG 1 cut(s) 128
AxyI CCTNAGG 2 cut(s) 356, 431
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 1 cut(s) 351
Bbv12I GWGCWC 3 cut(s) 255, 378, 388
BbvI GCAGC 6 cut(s) 85, 88, 91, 292, 342, 374
BccI CCATC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 1 cut(s) 325
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 120, 386
BfoI RGCGCY 2 cut(s) 127, 355
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 7 cut(s) 74, 77, 80, 106, 281, 331, 363
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 7 cut(s) 75, 78, 81, 107, 282, 332, 364
Bme1390I CCNGG 2 cut(s) 128, 325
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 2 cut(s) 128, 325
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 2 cut(s) 456, 531
Bpu1102I GCTNAGC 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 140, 494
BpuMI CCSGG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 246, 324
BsaWI WCCGGW 2 cut(s) 172, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse1I ACTGG 4 cut(s) 137, 148, 193, 232
Bse21I CCTNAGG 2 cut(s) 356, 431
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 246, 324
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 4 cut(s) 115, 131, 370, 422
BseNI ACTGG 4 cut(s) 137, 148, 193, 232
BseRI GAGGAG 4 cut(s) 31, 34, 386, 396
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 6 cut(s) 85, 88, 91, 292, 342, 374
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 2 cut(s) 147, 323
BshNI GGYRCC 1 cut(s) 351
BsiHKAI GWGCWC 3 cut(s) 255, 378, 388
BsiSI CCGG 4 cut(s) 127, 173, 316, 389
BslFI GGGAC 2 cut(s) 143, 169
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 2 cut(s) 120, 386
BsmFI GGGAC 2 cut(s) 143, 169
BsnI GGCC 2 cut(s) 147, 323
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 3 cut(s) 255, 378, 388
Bsp143I GATC 5 cut(s) 10, 50, 64, 345, 546
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 3 cut(s) 98, 106, 311
BspANI GGCC 2 cut(s) 147, 323
BspCNI CTCAG 4 cut(s) 114, 130, 369, 423
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 353
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 386
BsrBI CCGCTC 2 cut(s) 100, 313
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 4 cut(s) 137, 148, 193, 232
BssECI CCNNGG 2 cut(s) 246, 324
BssMI GATC 5 cut(s) 10, 50, 64, 345, 546
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 311, 321
BstDEI CTNAG 6 cut(s) 101, 117, 356, 431, 456, 531
BstFNI CGCG 1 cut(s) 341
BstH2I RGCGCY 2 cut(s) 127, 355
BstHHI GCGC 3 cut(s) 126, 343, 354
BstKTI GATC 5 cut(s) 13, 53, 67, 348, 549
BstMAI GTCTC 2 cut(s) 120, 386
BstMBI GATC 5 cut(s) 10, 50, 64, 345, 546
BstMWI GCNNNNNNNGC 2 cut(s) 79, 349
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 126, 323
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 6 cut(s) 85, 88, 91, 292, 342, 374
Bsu36I CCTNAGG 2 cut(s) 356, 431
BsuRI GGCC 2 cut(s) 147, 323
BtrI CACGTC 1 cut(s) 205
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 311, 321
CfoI GCGC 3 cut(s) 126, 343, 354
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 181, 260
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 6 cut(s) 101, 117, 356, 431, 456, 531
DinI GGCGCC 1 cut(s) 353
DpnI GATC 5 cut(s) 12, 52, 66, 347, 548
DpnII GATC 5 cut(s) 10, 50, 64, 345, 546
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 386
Eco81I CCTNAGG 2 cut(s) 356, 431
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 353
EheI GGCGCC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 184, 263
FaiI YATR 5 cut(s) 15, 182, 261, 369, 475
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 2 cut(s) 143, 169
FatI CATG 2 cut(s) 180, 259
FauI CCCGC 1 cut(s) 318
Fnu4HI GCNGC 7 cut(s) 74, 77, 80, 106, 281, 331, 363
Fsp4HI GCNGC 7 cut(s) 74, 77, 80, 106, 281, 331, 363
GlaI GCGC 3 cut(s) 125, 342, 353
GluI GCNGC 7 cut(s) 74, 77, 80, 106, 281, 331, 363
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 2 cut(s) 127, 355
HaeIII GGCC 2 cut(s) 147, 323
HapII CCGG 4 cut(s) 127, 173, 316, 389
HgaI GACGC 1 cut(s) 347
HhaI GCGC 3 cut(s) 126, 343, 354
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 2 cut(s) 184, 263
Hin6I GCGC 3 cut(s) 124, 341, 352
HinP1I GCGC 3 cut(s) 124, 341, 352
HinfI GANTC 3 cut(s) 26, 113, 469
HpaII CCGG 4 cut(s) 127, 173, 316, 389
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 4 cut(s) 6, 48, 157, 555
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 3 cut(s) 151, 227, 436
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 253, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 349
HpyF3I CTNAG 6 cut(s) 101, 117, 356, 431, 456, 531
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 2 cut(s) 184, 263
HspAI GCGC 3 cut(s) 124, 341, 352
KasI GGCGCC 1 cut(s) 351
Kzo9I GATC 5 cut(s) 10, 50, 64, 345, 546
LmnI GCTCC 4 cut(s) 318, 373, 383, 413
Lsp1109I GCAGC 6 cut(s) 85, 88, 91, 292, 342, 374
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 407
MalI GATC 5 cut(s) 12, 52, 66, 347, 548
MbiI CCGCTC 2 cut(s) 100, 313
MboI GATC 5 cut(s) 10, 50, 64, 345, 546
MboII GAAGA 3 cut(s) 493, 502, 505
MhlI GDGCHC 3 cut(s) 255, 378, 388
Mly113I GGCGCC 1 cut(s) 352
MlyI GAGTC 1 cut(s) 122
MroXI GAANNNNTTC 2 cut(s) 25, 140
MslI CAYNNNNRTG 2 cut(s) 258, 264
MspI CCGG 4 cut(s) 127, 173, 316, 389
MspR9I CCNGG 2 cut(s) 128, 325
MvaI CCWGG 1 cut(s) 325
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 79, 349
NarI GGCGCC 1 cut(s) 352
NciI CCSGG 1 cut(s) 128
NdeII GATC 5 cut(s) 10, 50, 64, 345, 546
NlaIII CATG 2 cut(s) 184, 263
NlaIV GGNNCC 1 cut(s) 353
PaqCI CACCTGC 1 cut(s) 314
PceI AGGCCT 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 2 cut(s) 25, 140
PfeI GAWTC 2 cut(s) 26, 469
PkrI GCNGC 7 cut(s) 75, 78, 81, 107, 282, 332, 364
PleI GAGTC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 353
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 258, 264
SatI GCNGC 7 cut(s) 74, 77, 80, 106, 281, 331, 363
Sau3AI GATC 5 cut(s) 10, 50, 64, 345, 546
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 128, 325
SduI GDGCHC 3 cut(s) 255, 378, 388
SfoI GGCGCC 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 258, 264
SmlI CTYRAG 2 cut(s) 155, 509
SmoI CTYRAG 2 cut(s) 155, 509
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 3 cut(s) 98, 106, 311
SspDI GGCGCC 1 cut(s) 351
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 2 cut(s) 126, 323
StyI CCWWGG 1 cut(s) 246
TaiI ACGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 33, 210, 228, 336
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 2 cut(s) 26, 469
TseI GCWGC 6 cut(s) 73, 76, 79, 280, 330, 362
TspGWI ACGGA 2 cut(s) 393, 426
VneI GTGCAC 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 25, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.