AT4G18740

Rho termination factor, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013074
Physical Location & Seq
Reverse (-)
10303343 .. 10304624
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18740.1

Sequence Viewer

Length: 738 bp
ATGGACTTGGCTCTTCATTGTCATTGTGCTTACCCGTTGATCAAACTAGGATTCATGAGAGCTAAATCAGCCAATCATCTTCATGTTCGAGATACTCATTCACTGCCGTTTGCGTTGCGCTTTGAGCAGAGTCTTTCGAGAACAACGATTAATGGAGATAGAAGTATTTGGTTTCAAGAGAAAGGTGGTTCTTCTTATACTTCAATGGGAAGATCCAAGAAAGGATGTGTTTGTTGCAAGAAACCGTCTGATAGACGAACGTCAAACCCAAGTAAATCGAACCAAGAGGAGATCATTTCGCTCTTGAAACGGATTCAATCTTCGATCTCTAAAGGAGAGTCTCGAGGAGTCGAGGAAGAGAAGAACAGCGATGAGTCTTCTAAGGAAAAGCCGCTGACCAAAGCTATTCTTGACGTTCTTGAGAAATCAAGAAAAAAAACTGAGGGAGATACTAGTGTGAAGGAGAAGCCACCAAAGAGACAAGTAGAGCTTCCTCGACCACCGTCTAGTTTTGTCAAGAGAACTCCTTTATCTTCTTCTGCCTCAGGTCCAAGAGGTAAGCTCCCAGTATCAAACAGCGATAAAGCTTTAGGAAAATTGACAAAGAAGGAAGAGAAAGCTTCACTGATAGAAACTATGAAACTTGCAGAGCTCAAAGAAGTTGCAAAGAACAGAGGAATCAAAGGATACTCAAAGTTGAGGAAGAGTGAACTATTGGAGCTGATAAGATCGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

245

Amino Acids

27.32

Weight (kDa)

9.92

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 211 - 242 7.4e-09 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18740 AT4G18740 AT4G18740 AT4G18740
fragaria_vesca FvH4_3g07440
malus_domestica MD05G1297000.v1.1
prunus_persica Prupe.4G065300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011411
rosa_laevigata RLG00000031831
rosa_multiflora Rmu_co8186696.1_g000001 Rmu_sc0009975.1_g000015
rosa_roxburghii Rroxscaffold_1G00065040
rosa_rugosa Rorug04G0456900
rosa_samantha Rh5AG088700 Rh5BG083700 Rh5CG097000 Rh5DG083700
rosa_wichuraiana Rw5G007700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 392
AclWI GGATC 1 cut(s) 207
AgsI TTSAA 4 cut(s) 176, 204, 307, 317
AhlI ACTAGT 1 cut(s) 452
AluBI AGCT 8 cut(s) 62, 404, 490, 562, 587, 620, 652, 721
AluI AGCT 8 cut(s) 62, 404, 490, 562, 587, 620, 652, 721
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 2 cut(s) 345, 472
AlwI GGATC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 342
AseI ATTAAT 1 cut(s) 150
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 544
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BanII GRGCYC 1 cut(s) 654
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 654
BceAI ACGGC 1 cut(s) 91
BciVI GTATCC 1 cut(s) 680
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 345, 472
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 3 cut(s) 47, 453, 507
BfuI GTATCC 1 cut(s) 680
BisI GCNGC 1 cut(s) 392
BlsI GCNGC 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 548
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 548
BmrI ACTGGG 1 cut(s) 560
BmuI ACTGGG 1 cut(s) 560
BoxI GACNNNNGTC 2 cut(s) 259, 502
BpiI GAAGAC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 546, 578
BpuEI CTTGAG 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 566
Bse21I CCTNAGG 1 cut(s) 544
BseGI GGATG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 432, 558
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 2 cut(s) 302, 360
BsiHKAI GWGCWC 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 345, 472
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 5 cut(s) 39, 212, 291, 324, 728
BspACI CCGC 1 cut(s) 392
BspCNI CTCAG 2 cut(s) 433, 557
BspHI TCATGA 1 cut(s) 54
BspPI GGATC 1 cut(s) 207
BspQI GCTCTTC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 566
BssMI GATC 5 cut(s) 39, 212, 291, 324, 728
Bst4CI ACNGT 2 cut(s) 246, 504
Bst6I CTCTTC 4 cut(s) 18, 351, 606, 698
BstDEI CTNAG 3 cut(s) 381, 441, 544
BstF5I GGATG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 5 cut(s) 42, 215, 294, 327, 731
BstMAI GTCTC 2 cut(s) 345, 472
BstMBI GATC 5 cut(s) 39, 212, 291, 324, 728
BstMWI GCNNNNNNNGC 2 cut(s) 68, 124
BstPAI GACNNNNGTC 2 cut(s) 259, 502
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 544
BsuI GTATCC 1 cut(s) 680
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 101, 623
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 548
CviAII CATG 2 cut(s) 55, 83
DdeI CTNAG 3 cut(s) 381, 441, 544
DpnI GATC 5 cut(s) 41, 214, 293, 326, 730
DpnII GATC 5 cut(s) 39, 212, 291, 324, 728
Eam1104I CTCTTC 4 cut(s) 18, 351, 606, 698
EarI CTCTTC 4 cut(s) 18, 351, 606, 698
Ecl136II GAGCTC 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 652
Eco81I CCTNAGG 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 2 cut(s) 58, 86
FaiI YATR 4 cut(s) 56, 84, 198, 638
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 474, 506
FatI CATG 2 cut(s) 54, 82
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 392
FokI GGATG 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 1 cut(s) 392
FspBI CTAG 3 cut(s) 47, 453, 507
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 392
HhaI GCGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 58, 86
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 2 cut(s) 585, 618
HinfI GANTC 7 cut(s) 51, 130, 313, 338, 348, 374, 678
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 710
HpyAV CCTTC 2 cut(s) 454, 601
HpyCH4III ACNGT 2 cut(s) 246, 504
HpyCH4IV ACGT 2 cut(s) 260, 414
HpyCH4V TGCA 3 cut(s) 237, 647, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 124
HpyF3I CTNAG 3 cut(s) 381, 441, 544
HpySE526I ACGT 2 cut(s) 260, 414
Hsp92II CATG 2 cut(s) 58, 86
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 5 cut(s) 39, 212, 291, 324, 728
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 567, 718
LpnPI CCDG 2 cut(s) 531, 579
MaeI CTAG 3 cut(s) 47, 453, 507
MaeII ACGT 2 cut(s) 260, 414
MalI GATC 5 cut(s) 41, 214, 293, 326, 730
MboI GATC 5 cut(s) 39, 212, 291, 324, 728
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 1 cut(s) 596
MlyI GAGTC 4 cut(s) 139, 347, 357, 383
MnlI CCTC 9 cut(s) 280, 338, 346, 436, 504, 548, 553, 668, 693
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 394
MwoI GCNNNNNNNGC 2 cut(s) 68, 124
NdeII GATC 5 cut(s) 39, 212, 291, 324, 728
NlaIII CATG 2 cut(s) 58, 86
PaeR7I CTCGAG 1 cut(s) 342
PagI TCATGA 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 3 cut(s) 51, 313, 678
PkrI GCNGC 1 cut(s) 393
PleI GAGTC 4 cut(s) 138, 346, 356, 382
PpsI GAGTC 4 cut(s) 138, 346, 356, 382
PshAI GACNNNNGTC 2 cut(s) 259, 502
PshBI ATTAAT 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 654
PspPI GGNCC 1 cut(s) 548
PsuI RGATCY 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 81
SacI GAGCTC 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 5 cut(s) 39, 212, 291, 324, 728
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 4 cut(s) 139, 347, 357, 383
SduI GDGCHC 1 cut(s) 654
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 548
SlaI CTCGAG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 342, 419
SmoI CTYRAG 2 cut(s) 342, 419
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 1 cut(s) 596
SsiI CCGC 1 cut(s) 392
SspMI CTAG 3 cut(s) 47, 453, 507
SstI GAGCTC 1 cut(s) 654
TaaI ACNGT 2 cut(s) 246, 504
TaiI ACGT 2 cut(s) 263, 417
TaqI TCGA 7 cut(s) 88, 137, 278, 323, 343, 351, 496
TasI AATT 1 cut(s) 596
TauI GCSGC 1 cut(s) 394
TfiI GAWTC 3 cut(s) 51, 313, 678
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 2 cut(s) 108, 630
TspDTI ATGAA 4 cut(s) 5, 43, 71, 653
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 108, 630
VpaK11BI GGWCC 1 cut(s) 548
VspI ATTAAT 1 cut(s) 150
XhoI CTCGAG 1 cut(s) 342
XspI CTAG 3 cut(s) 47, 453, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.