FvH4_3g07440

Rho termination factor, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013074
Physical Location & Seq
Forward (+)
4411709 .. 4413188
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07440.t1

Sequence Viewer

Length: 774 bp
ATGGGTGGAATTGTATATCAGTATCACTCTGTGCTGCATTTCCCCACATTCTCATCTTTCAGCAAGCAACCCAAGTATGGAAAACCCATTTTCTCTCTCAAAGACATTGCAGATGTGGCTTTACCGTTTGAGAGGAAGGGGCAGAAGCTAATTGTGAGCTGCAATGGGTCTGATGAAGGAAACAGAAGAGGTCAGTCTTCCAGGAGAAGTACAGGTTCAGGAAGAACAGCAAAGAATGATGAAGCTAAGAAACCTCGAGGTGGGAGGAAGTCCAAGTCATCTAACCAGGAAGAAATCATTTCTCTGTTCAGAAGGATACAGTCTTCGATATCCAAGGAAGTCGAGTCTGTGGACACTAAGAAGATAAAGTCTGATGCATCTGAAGAGAAGCCGCCCTCTGCTGAGTCAATTCTTAGGGTTCTTCAGGGTGGATCAACAAAGCAAAGAGAAGTTAAGCAGGACAGACGAAAGGTTGATACACAAGAGCAGCGAATACAGGCTAATCCATCAGTAACAGACTTCAAGTTAACGCGTCCACCATCCAAATTCGTGAAGAGGTCTCCAATTCCATCATCAGCACACATGTCAAGGCCACCAGGAGAGGTTCTTGAGACGAAAAATGGAGCATCGGTAACCACTGCTGTAACCGAGTTAGAGTTGGAAAGAGTAGAAGAAATGAAACTCCCTGAGCTGAAAGAACTGGCAAAGTCTAGAGGGATGAGAGGTTACTCCAAACTCAAAAAGAAGGAGCTCGTGGAACTGCTGAAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

258

Amino Acids

28.73

Weight (kDa)

10.02

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 224 - 256 2e-07 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18740 AT4G18740 AT4G18740 AT4G18740
fragaria_vesca FvH4_3g07440
malus_domestica MD05G1297000.v1.1
prunus_persica Prupe.4G065300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011411
rosa_laevigata RLG00000031831
rosa_multiflora Rmu_co8186696.1_g000001 Rmu_sc0009975.1_g000015
rosa_roxburghii Rroxscaffold_1G00065040
rosa_rugosa Rorug04G0456900
rosa_samantha Rh5AG088700 Rh5BG083700 Rh5CG097000 Rh5DG083700
rosa_wichuraiana Rw5G007700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 255
AccII CGCG 1 cut(s) 532
AciI CCGC 1 cut(s) 392
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 2 cut(s) 402, 407
AdeI CACNNNGTG 1 cut(s) 31
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 77, 260
AflIII ACRYGT 2 cut(s) 530, 582
AgsI TTSAA 1 cut(s) 523
AjnI CCWGG 3 cut(s) 200, 285, 595
AluBI AGCT 5 cut(s) 148, 159, 245, 691, 751
AluI AGCT 5 cut(s) 148, 159, 245, 691, 751
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 2 cut(s) 564, 605
AlwI GGATC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 1 cut(s) 590
ApeKI GCWGC 3 cut(s) 34, 159, 487
ApoI RAATTY 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 255
BanII GRGCYC 1 cut(s) 753
BauI CACGAG 1 cut(s) 752
BbsI GAAGAC 2 cut(s) 189, 315
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 3 cut(s) 21, 146, 499
BccI CCATC 3 cut(s) 514, 547, 577
BciT130I CCWGG 3 cut(s) 202, 287, 597
BciVI GTATCC 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 564, 605
BfaI CTAG 1 cut(s) 711
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 4 cut(s) 35, 160, 392, 488
BlsI GCNGC 4 cut(s) 36, 161, 393, 489
Bme1390I CCNGG 3 cut(s) 202, 287, 597
BmeT110I CYCGRG 1 cut(s) 255
BmrFI CCNGG 3 cut(s) 202, 287, 597
BmsI GCATC 3 cut(s) 364, 386, 635
BpiI GAAGAC 2 cut(s) 189, 315
Bpu10I CCTNAGC 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 260
Bse1I ACTGG 1 cut(s) 705
Bse3DI GCAATG 2 cut(s) 105, 169
BseBI CCWGG 3 cut(s) 202, 287, 597
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 539, 723
BseLI CCNNNNNNNGG 2 cut(s) 77, 260
BseMI GCAATG 2 cut(s) 105, 169
BseMII CTCAG 2 cut(s) 393, 678
BseNI ACTGG 1 cut(s) 705
BseXI GCAGC 3 cut(s) 21, 146, 499
Bsh1236I CGCG 1 cut(s) 532
BshFI GGCC 1 cut(s) 592
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 77, 260
BsmAI GTCTC 2 cut(s) 564, 605
BsmBI CGTCTC 1 cut(s) 605
BsnI GGCC 1 cut(s) 592
Bso31I GGTCTC 1 cut(s) 564
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 1 cut(s) 431
BspACI CCGC 1 cut(s) 392
BspANI GGCC 1 cut(s) 592
BspCNI CTCAG 2 cut(s) 394, 679
BspFNI CGCG 1 cut(s) 532
BspPI GGATC 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 564
BsrDI GCAATG 2 cut(s) 105, 169
BsrI ACTGG 1 cut(s) 705
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 1 cut(s) 431
BssSI CACGAG 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 752
Bst2UI CCWGG 3 cut(s) 202, 287, 597
Bst4CI ACNGT 2 cut(s) 126, 321
Bst6I CTCTTC 3 cut(s) 181, 378, 548
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 5 cut(s) 246, 357, 402, 413, 687
BstEII GGTNACC 1 cut(s) 631
BstF5I GGATG 2 cut(s) 539, 723
BstFNI CGCG 1 cut(s) 532
BstKTI GATC 1 cut(s) 434
BstMAI GTCTC 2 cut(s) 564, 605
BstMBI GATC 1 cut(s) 431
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 3 cut(s) 202, 287, 597
BstNSI RCATGY 1 cut(s) 586
BstPI GGTNACC 1 cut(s) 631
BstSCI CCNGG 3 cut(s) 200, 285, 595
BstUI CGCG 1 cut(s) 532
BstV1I GCAGC 3 cut(s) 21, 146, 499
BstV2I GAAGAC 2 cut(s) 189, 315
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 1 cut(s) 592
BtsCI GGATG 2 cut(s) 539, 723
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 1 cut(s) 65
CseI GACGC 1 cut(s) 521
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 583
CviJI RGCY 9 cut(s) 119, 148, 159, 245, 391, 500, 592, 691, 751
CviKI_1 RGCY 9 cut(s) 119, 148, 159, 245, 391, 500, 592, 691, 751
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 5 cut(s) 246, 357, 402, 413, 687
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
DraIII CACNNNGTG 1 cut(s) 31
Eam1104I CTCTTC 3 cut(s) 181, 378, 548
EarI CTCTTC 3 cut(s) 181, 378, 548
Ecl136II GAGCTC 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 753
Eco31I GGTCTC 1 cut(s) 564
Eco32I GATATC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 751
Eco57I CTGAAG 2 cut(s) 402, 407
Eco88I CYCGRG 1 cut(s) 255
Eco91I GGTNACC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 631
EcoRII CCWGG 3 cut(s) 200, 285, 595
EcoRV GATATC 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 605
FaeI CATG 1 cut(s) 586
FaiI YATR 3 cut(s) 16, 78, 584
FatI CATG 1 cut(s) 582
Fnu4HI GCNGC 4 cut(s) 35, 160, 392, 488
FokI GGATG 2 cut(s) 526, 730
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 4 cut(s) 35, 160, 392, 488
FspBI CTAG 1 cut(s) 711
GluI GCNGC 4 cut(s) 35, 160, 392, 488
HaeIII GGCC 1 cut(s) 592
HgaI GACGC 1 cut(s) 521
Hin1II CATG 1 cut(s) 586
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 2 cut(s) 344, 404
HpaI GTTAAC 1 cut(s) 528
Hpy166II GTNNAC 3 cut(s) 352, 528, 536
Hpy188I TCNGA 4 cut(s) 172, 311, 373, 382
Hpy188III TCNNGA 4 cut(s) 219, 550, 608, 711
Hpy8I GTNNAC 3 cut(s) 352, 528, 536
HpyAV CCTTC 4 cut(s) 130, 170, 306, 739
HpyCH4III ACNGT 2 cut(s) 126, 321
HpyCH4V TGCA 4 cut(s) 37, 110, 162, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 5 cut(s) 246, 357, 402, 413, 687
Hsp92II CATG 1 cut(s) 586
KspAI GTTAAC 1 cut(s) 528
Kzo9I GATC 1 cut(s) 431
LmnI GCTCC 2 cut(s) 623, 748
Lsp1109I GCAGC 3 cut(s) 21, 146, 499
LweI GCATC 3 cut(s) 364, 386, 635
MaeI CTAG 1 cut(s) 711
MaeIII GTNAC 4 cut(s) 511, 631, 643, 725
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 753
MluCI AATT 5 cut(s) 9, 150, 408, 545, 564
MluI ACGCGT 1 cut(s) 530
MlyI GAGTC 2 cut(s) 353, 413
MmeI TCCRAC 1 cut(s) 639
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 2 cut(s) 453, 527
MspR9I CCNGG 3 cut(s) 202, 287, 597
MvaI CCWGG 3 cut(s) 202, 287, 597
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 431
NlaIII CATG 1 cut(s) 586
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 586
PaeR7I CTCGAG 1 cut(s) 255
PciI ACATGT 1 cut(s) 582
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 4 cut(s) 36, 161, 393, 489
PleI GAGTC 2 cut(s) 352, 412
PpsI GAGTC 2 cut(s) 352, 412
PscI ACATGT 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 753
Psp6I CCWGG 3 cut(s) 200, 285, 595
PspEI GGTNACC 1 cut(s) 631
PspGI CCWGG 3 cut(s) 200, 285, 595
PspXI VCTCGAGB 1 cut(s) 255
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SacI GAGCTC 1 cut(s) 753
SaqAI TTAA 2 cut(s) 453, 527
SatI GCNGC 4 cut(s) 35, 160, 392, 488
Sau3AI GATC 1 cut(s) 431
SchI GAGTC 2 cut(s) 353, 413
ScrFI CCNGG 3 cut(s) 202, 287, 597
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 3 cut(s) 364, 386, 635
Sfr274I CTCGAG 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 255, 608
SmoI CTYRAG 2 cut(s) 255, 608
Sse9I AATT 5 cut(s) 9, 150, 408, 545, 564
SsiI CCGC 1 cut(s) 392
SspMI CTAG 1 cut(s) 711
SstI GAGCTC 1 cut(s) 753
StyD4I CCNGG 3 cut(s) 200, 285, 595
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 126, 321
TaqI TCGA 3 cut(s) 256, 326, 342
TasI AATT 5 cut(s) 9, 150, 408, 545, 564
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 394
Tru1I TTAA 2 cut(s) 453, 527
Tru9I TTAA 2 cut(s) 453, 527
TscAI CASTG 1 cut(s) 643
TseI GCWGC 3 cut(s) 34, 159, 487
TspDTI ATGAA 3 cut(s) 189, 255, 692
TspRI CASTG 1 cut(s) 643
XapI RAATTY 1 cut(s) 545
XbaI TCTAGA 1 cut(s) 710
XceI RCATGY 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 255
XspI CTAG 1 cut(s) 711
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.