Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8186696.1

Orthogroup ID

OG0013074

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 693

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8186696.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

tgcagcttgttaaatttggcagacattgcagatgtgtcttcaccgtttgagaggaaggggctgaagttaacagtggcctgcgttggatctgatgaaggaagcggaagaggtcaatcttctaggagaagttcaggttcaggaagaacaaggaaaaatgatgaacctaagaaagctcgaggtgggagaaagtccaagtcatctaaccaggaagagatcatatctctgtttaggcggatacagtcttcgatctcaaaggtagactcagtagatactaagaagataaagtccaatgaatcggaagagaagccgccctcggctgagtcaattcttagggttcttcaaggtggatcaacaaagcaacgagaagaagctaaccaggaaggagaaaaggttgatatgaaagagcagcaaatacaggctaatctatcagttacagacttcaagttaacgcggccaccgtccaaattcgtgaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rho_N

Protein Analysis

158

Amino Acids

17.33

Weight (kDa)

9.73

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18740 AT4G18740 AT4G18740 AT4G18740
fragaria_vesca	FvH4_3g07440
malus_domestica	MD05G1297000.v1.1
prunus_persica	Prupe.4G065300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011411
rosa_laevigata	RLG00000031831
rosa_multiflora	Rmu_co8186696.1_g000001 Rmu_sc0009975.1_g000015
rosa_roxburghii	Rroxscaffold_1G00065040
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088700 Rh5BG083700 Rh5CG097000 Rh5DG083700
rosa_wichuraiana	Rw5G007700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	451
AciI	CCGC	4 cut(s)	102, 232, 308, 451
AclWI	GGATC	2 cut(s)	94, 355
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	2 cut(s)	13, 464
AcuI	CTGAAG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	341, 442
AjnI	CCWGG	2 cut(s)	204, 375
AluBI	AGCT	3 cut(s)	6, 173, 371
AluI	AGCT	3 cut(s)	6, 173, 371
AlwI	GGATC	2 cut(s)	94, 355
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	75, 452
ApeKI	GCWGC	2 cut(s)	3, 406
ApoI	RAATTY	2 cut(s)	13, 464
AsuHPI	GGTGA	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	30, 234
BbvI	GCAGC	2 cut(s)	15, 418
BciT130I	CCWGG	2 cut(s)	206, 377
BciVI	GTATCC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	4 cut(s)	4, 308, 407, 452
BlsI	GCNGC	4 cut(s)	5, 309, 408, 453
Bme1390I	CCNGG	2 cut(s)	206, 377
BmeT110I	CYCGRG	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	206, 377
BpiI	GAAGAC	2 cut(s)	30, 234
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	206, 377
BseDI	CCNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	276, 309
BseXI	GCAGC	2 cut(s)	15, 418
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	2 cut(s)	77, 454
BsiHKCI	CYCGRG	1 cut(s)	174
BsnI	GGCC	2 cut(s)	77, 454
BsoBI	CYCGRG	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	86, 213, 246, 347
BspACI	CCGC	4 cut(s)	102, 232, 308, 451
BspANI	GGCC	2 cut(s)	77, 454
BspCNI	CTCAG	2 cut(s)	275, 310
BspFNI	CGCG	1 cut(s)	451
BspPI	GGATC	2 cut(s)	94, 355
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	4 cut(s)	86, 213, 246, 347
Bst2UI	CCWGG	2 cut(s)	206, 377
Bst4CI	ACNGT	4 cut(s)	45, 73, 240, 459
Bst6I	CTCTTC	4 cut(s)	100, 204, 294, 467
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	5 cut(s)	165, 262, 273, 318, 329
BstFNI	CGCG	1 cut(s)	451
BstKTI	GATC	4 cut(s)	89, 216, 249, 350
BstMBI	GATC	4 cut(s)	86, 213, 246, 347
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	206, 377
BstSCI	CCNGG	2 cut(s)	204, 375
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	15, 418
BstV2I	GAAGAC	2 cut(s)	30, 234
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	77, 454
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	79
CviJI	RGCY	9 cut(s)	6, 61, 77, 173, 307, 317, 371, 419, 454
CviKI_1	RGCY	9 cut(s)	6, 61, 77, 173, 307, 317, 371, 419, 454
DdeI	CTNAG	5 cut(s)	165, 262, 273, 318, 329
DpnI	GATC	4 cut(s)	88, 215, 248, 349
DpnII	GATC	4 cut(s)	86, 213, 246, 347
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	4 cut(s)	100, 204, 294, 467
EarI	CTCTTC	4 cut(s)	100, 204, 294, 467
EciI	GGCGGA	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	204, 375
FaiI	YATR	2 cut(s)	218, 398
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	4, 308, 407, 452
Fsp4HI	GCNGC	4 cut(s)	4, 308, 407, 452
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	4 cut(s)	4, 308, 407, 452
HaeIII	GGCC	2 cut(s)	77, 454
HincII	GTYRAC	2 cut(s)	69, 447
HindII	GTYRAC	2 cut(s)	69, 447
HinfI	GANTC	3 cut(s)	260, 293, 320
HpaI	GTTAAC	2 cut(s)	69, 447
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	3 cut(s)	69, 259, 447
Hpy188I	TCNGA	2 cut(s)	91, 298
Hpy188III	TCNNGA	2 cut(s)	138, 469
Hpy8I	GTNNAC	3 cut(s)	69, 259, 447
HpyAV	CCTTC	3 cut(s)	49, 89, 374
HpyCH4III	ACNGT	4 cut(s)	45, 73, 240, 459
HpyCH4V	TGCA	2 cut(s)	3, 29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	5 cut(s)	165, 262, 273, 318, 329
KspAI	GTTAAC	2 cut(s)	69, 447
Kzo9I	GATC	4 cut(s)	86, 213, 246, 347
LpnPI	CCDG	8 cut(s)	91, 117, 123, 191, 218, 362, 389, 401
Lsp1109I	GCAGC	2 cut(s)	15, 418
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	4 cut(s)	88, 215, 248, 349
MboI	GATC	4 cut(s)	86, 213, 246, 347
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	3 cut(s)	13, 324, 464
MlyI	GAGTC	2 cut(s)	254, 329
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	45, 101, 170, 322
MseI	TTAA	3 cut(s)	11, 68, 446
MspR9I	CCNGG	2 cut(s)	206, 377
MvaI	CCWGG	2 cut(s)	206, 377
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	4 cut(s)	86, 213, 246, 347
NmeAIII	GCCGAG	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	5, 309, 408, 453
PleI	GAGTC	2 cut(s)	254, 328
PpsI	GAGTC	2 cut(s)	254, 328
Psp6I	CCWGG	2 cut(s)	204, 375
PspGI	CCWGG	2 cut(s)	204, 375
PspXI	VCTCGAGB	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	11, 68, 446
SatI	GCNGC	4 cut(s)	4, 308, 407, 452
Sau3AI	GATC	4 cut(s)	86, 213, 246, 347
SchI	GAGTC	2 cut(s)	254, 329
ScrFI	CCNGG	2 cut(s)	206, 377
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	13, 324, 464
SsiI	CCGC	4 cut(s)	102, 232, 308, 451
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	204, 375
TaaI	ACNGT	4 cut(s)	45, 73, 240, 459
TaqI	TCGA	2 cut(s)	175, 245
TasI	AATT	3 cut(s)	13, 324, 464
TauI	GCSGC	2 cut(s)	310, 454
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	11, 68, 446
Tru9I	TTAA	3 cut(s)	11, 68, 446
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	2 cut(s)	3, 406
TspDTI	ATGAA	4 cut(s)	108, 174, 306, 413
TspRI	CASTG	1 cut(s)	78
XapI	RAATTY	2 cut(s)	13, 464
XhoI	CTCGAG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.