MD05G1297000.v1.1

Rho termination factor, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013074
Physical Location & Seq
Forward (+)
43115903 .. 43117567
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1297000.v1.1.491

Sequence Viewer

Length: 792 bp
ATGGGCGCGAGTGGTTTTCAATACGATTCTGTGCTTCGGTTTCCGACTTTCTTCTCTTTCAGCAAGCAGCCCAAGCTGGGAAACCCCATTTTCTCTCTCAAAGATGTGTCCCCACTCTTTGAGCGAAAGGAGCTTCACTTAACAGTCACCTGCAGCGTTGGATCTCAAGGAAATGGAAGAGACCAACCACCTCGGCGACGATCAGAAAGAGCGAACAAGGATGGAAGCAAGAAACGGGGATCCAGAAAAACGAACGCAAACCAGGAAGAGATCATTTCTCTATTCAGACGGATTCAGACTTCGATCTCAAAAGAAGGGTCTGTGGATGACGAGAAGATTGGCTCCGATGACTATGAAGATAGGCCGCATTCTGATTCGATTCTTCGCGCTCTTCACGGGTTAAGGAATCCGAAAGGCAAAGCTGATGAGAAGGACGGGAAAAAGGTTTTCATAAGGAGAACCGATACGAGAGAGGAGCAAATGCAGAGTAATCCTCCAGTTGCAGAGTTCAAGTTGACACGGCCGCCATCAAAATTTGTGAAACGATCCCCGATTCCACATCCATCGACCCCGAGATCACAGTTTCTGGATCTGGATAACGGAGCAACACCTTCGGCGACTGGAAGGTCCGGTGCAGAGGAATTAGATTTAAGGTCCGGTGCAGAGGAATTAGATTTAGTGAGAGTGGAAGGAATGAAACTCCCCGAGCTGAAGGAGCTCGCAAAGTCGAGAGGAATGAGAGGTTACTCAAAACTCAAAAAAATGGAGCTTGTGAAACTGCTCAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rho_N

Protein Analysis

264

Amino Acids

29.56

Weight (kDa)

9.85

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_N PF07498 230 - 262 6e-06 Rho termination factor, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18740 AT4G18740 AT4G18740 AT4G18740
fragaria_vesca FvH4_3g07440
malus_domestica MD05G1297000.v1.1
prunus_persica Prupe.4G065300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011411
rosa_laevigata RLG00000031831
rosa_multiflora Rmu_co8186696.1_g000001 Rmu_sc0009975.1_g000015
rosa_roxburghii Rroxscaffold_1G00065040
rosa_rugosa Rorug04G0456900
rosa_samantha Rh5AG088700 Rh5BG083700 Rh5CG097000 Rh5DG083700
rosa_wichuraiana Rw5G007700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
AasI GACNNNNNNGTC 1 cut(s) 625
Acc36I ACCTGC 1 cut(s) 158
AccII CGCG 2 cut(s) 8, 387
AciI CCGC 2 cut(s) 365, 524
AclWI GGATC 5 cut(s) 169, 234, 247, 540, 597
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 1 cut(s) 533
AcuI CTGAAG 1 cut(s) 731
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 2 cut(s) 20, 511
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 6 cut(s) 76, 133, 422, 709, 718, 769
AluI AGCT 6 cut(s) 76, 133, 422, 709, 718, 769
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 5 cut(s) 169, 234, 247, 540, 597
AlwNI CAGNNNCTG 1 cut(s) 586
Ama87I CYCGRG 2 cut(s) 571, 704
AoxI GGCC 2 cut(s) 362, 521
ApeKI GCWGC 2 cut(s) 67, 153
ApoI RAATTY 1 cut(s) 533
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspLEI GCGC 2 cut(s) 8, 389
AspS9I GGNCC 2 cut(s) 627, 654
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 2 cut(s) 571, 704
AvaII GGWCC 2 cut(s) 627, 654
BamHI GGATCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 720
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 2 cut(s) 79, 165
BccI CCATC 3 cut(s) 215, 535, 571
BceAI ACGGC 1 cut(s) 536
BcgI CGANNNNNNTGC 2 cut(s) 594, 628
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 4 cut(s) 68, 154, 365, 524
BlsI GCNGC 4 cut(s) 69, 155, 366, 525
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 2 cut(s) 627, 654
BmeT110I CYCGRG 2 cut(s) 571, 704
BmgT120I GGNCC 2 cut(s) 627, 654
BmiI GGNNCC 2 cut(s) 241, 343
BmrFI CCNGG 1 cut(s) 263
BplI GAGNNNNNCTC 2 cut(s) 478, 510
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 150, 767
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 2 cut(s) 629, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 497, 625
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 3 cut(s) 226, 331, 559
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 497, 625
BseRI GAGGAG 1 cut(s) 488
BseX3I CGGCCG 1 cut(s) 521
BseXI GCAGC 2 cut(s) 79, 165
BseYI CCCAGC 1 cut(s) 76
BsgI GTGCAG 2 cut(s) 654, 681
Bsh1236I CGCG 2 cut(s) 8, 387
Bsh1285I CGRYCG 1 cut(s) 524
BshFI GGCC 2 cut(s) 364, 523
BsiEI CGRYCG 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 720
BsiHKCI CYCGRG 2 cut(s) 571, 704
BsiSI CCGG 2 cut(s) 630, 657
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 364, 523
Bso31I GGTCTC 1 cut(s) 174
BsoBI CYCGRG 2 cut(s) 571, 704
Bsp1286I GDGCHC 1 cut(s) 720
Bsp143I GATC 8 cut(s) 161, 200, 239, 270, 303, 545, 575, 589
BspACI CCGC 2 cut(s) 365, 524
BspANI GGCC 2 cut(s) 364, 523
BspFNI CGCG 2 cut(s) 8, 387
BspLI GGNNCC 2 cut(s) 241, 343
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 5 cut(s) 169, 234, 247, 540, 597
BspQI GCTCTTC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 174
BsrI ACTGG 2 cut(s) 497, 625
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 8 cut(s) 161, 200, 239, 270, 303, 545, 575, 589
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 145, 582
Bst6I CTCTTC 3 cut(s) 172, 261, 396
BstC8I GCNNGC 2 cut(s) 65, 720
BstF5I GGATG 3 cut(s) 226, 331, 559
BstFNI CGCG 2 cut(s) 8, 387
BstHHI GCGC 2 cut(s) 8, 389
BstKTI GATC 8 cut(s) 164, 203, 242, 273, 306, 548, 578, 592
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 8 cut(s) 161, 200, 239, 270, 303, 545, 575, 589
BstMCI CGRYCG 1 cut(s) 524
BstMWI GCNNNNNNNGC 3 cut(s) 73, 130, 715
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 2 cut(s) 8, 387
BstV1I GCAGC 2 cut(s) 79, 165
BstX2I RGATCY 3 cut(s) 161, 239, 589
BstYI RGATCY 3 cut(s) 161, 239, 589
BstZI CGGCCG 1 cut(s) 521
BsuRI GGCC 2 cut(s) 364, 523
BtsCI GGATG 3 cut(s) 226, 331, 559
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 65, 720
CaiI CAGNNNCTG 1 cut(s) 586
CfoI GCGC 2 cut(s) 8, 389
Cfr13I GGNCC 2 cut(s) 627, 654
DpnI GATC 8 cut(s) 163, 202, 241, 272, 305, 547, 577, 591
DpnII GATC 8 cut(s) 161, 200, 239, 270, 303, 545, 575, 589
DrdI GACNNNNNNGTC 1 cut(s) 625
DseDI GACNNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 521
EagI CGGCCG 1 cut(s) 521
Eam1104I CTCTTC 3 cut(s) 172, 261, 396
EarI CTCTTC 3 cut(s) 172, 261, 396
Ecl136II GAGCTC 1 cut(s) 718
EclXI CGGCCG 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 720
Eco31I GGTCTC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 627, 654
Eco52I CGGCCG 1 cut(s) 521
Eco53kI GAGCTC 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 731
Eco88I CYCGRG 2 cut(s) 571, 704
EcoICRI GAGCTC 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 720
FaiI YATR 2 cut(s) 354, 452
FaqI GGGAC 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 68, 154, 365, 524
FokI GGATG 3 cut(s) 233, 338, 546
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 4 cut(s) 68, 154, 365, 524
GlaI GCGC 2 cut(s) 7, 388
GluI GCNGC 4 cut(s) 68, 154, 365, 524
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 2 cut(s) 364, 523
HapII CCGG 2 cut(s) 630, 657
HhaI GCGC 2 cut(s) 8, 389
Hin6I GCGC 2 cut(s) 6, 387
HinP1I GCGC 2 cut(s) 6, 387
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 6 cut(s) 26, 292, 374, 379, 406, 553
HpaII CCGG 2 cut(s) 630, 657
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 7 cut(s) 45, 205, 287, 297, 346, 373, 411
Hpy188III TCNNGA 4 cut(s) 243, 587, 593, 729
Hpy8I GTNNAC 1 cut(s) 516
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 6 cut(s) 308, 424, 618, 621, 683, 706
HpyCH4III ACNGT 2 cut(s) 145, 582
HpyCH4V TGCA 5 cut(s) 153, 484, 503, 635, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 130, 715
HspAI GCGC 2 cut(s) 6, 387
Kzo9I GATC 8 cut(s) 161, 200, 239, 270, 303, 545, 575, 589
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 6 cut(s) 130, 347, 475, 602, 715, 766
Lsp1109I GCAGC 2 cut(s) 79, 165
MaeIII GTNAC 2 cut(s) 145, 743
MalI GATC 8 cut(s) 163, 202, 241, 272, 305, 547, 577, 591
MboI GATC 8 cut(s) 161, 200, 239, 270, 303, 545, 575, 589
MboII GAAGA 7 cut(s) 43, 189, 278, 346, 368, 374, 383
MflI RGATCY 3 cut(s) 161, 239, 589
MhlI GDGCHC 1 cut(s) 720
MluCI AATT 3 cut(s) 533, 641, 668
MmeI TCCRAC 2 cut(s) 68, 139
MnlI CCTC 7 cut(s) 201, 466, 504, 631, 658, 725, 734
MseI TTAA 4 cut(s) 140, 401, 650, 790
MspI CCGG 2 cut(s) 630, 657
MspR9I CCNGG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 2 cut(s) 8, 387
MwoI GCNNNNNNNGC 3 cut(s) 73, 130, 715
NdeII GATC 8 cut(s) 161, 200, 239, 270, 303, 545, 575, 589
NlaIV GGNNCC 2 cut(s) 241, 343
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 6 cut(s) 26, 292, 374, 379, 406, 553
PkrI GCNGC 4 cut(s) 69, 155, 366, 525
Psp124BI GAGCTC 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 241, 343
PspPI GGNCC 2 cut(s) 627, 654
PstI CTGCAG 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 586
PsuI RGATCY 3 cut(s) 161, 239, 589
SacI GAGCTC 1 cut(s) 720
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 4 cut(s) 140, 401, 650, 790
SatI GCNGC 4 cut(s) 68, 154, 365, 524
Sau3AI GATC 8 cut(s) 161, 200, 239, 270, 303, 545, 575, 589
Sau96I GGNCC 2 cut(s) 627, 654
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 1 cut(s) 720
SfcI CTRYAG 1 cut(s) 151
SinI GGWCC 2 cut(s) 627, 654
SmlI CTYRAG 2 cut(s) 165, 782
SmoI CTYRAG 2 cut(s) 165, 782
Sse9I AATT 3 cut(s) 533, 641, 668
SsiI CCGC 2 cut(s) 365, 524
SstI GAGCTC 1 cut(s) 720
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 145, 582
TaqI TCGA 4 cut(s) 302, 377, 566, 728
TasI AATT 3 cut(s) 533, 641, 668
TauI GCSGC 2 cut(s) 367, 526
TfiI GAWTC 6 cut(s) 26, 292, 374, 379, 406, 553
Tru1I TTAA 4 cut(s) 140, 401, 650, 790
Tru9I TTAA 4 cut(s) 140, 401, 650, 790
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 67, 153
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 369, 439, 710
TspGWI ACGGA 2 cut(s) 304, 615
VpaK11BI GGWCC 2 cut(s) 627, 654
XapI RAATTY 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.