Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012730

Physical Location & Seq

Genomic Coordinates Reverse (-)

10319862 .. 10321573

Gene Structure 1712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGGGTTACAGAGCAGATGATGATTACGATTACCTATTCAAGGTGGTTCTGATCGGTGATTCAGGTGTTGGAAAGTCCAATTTGCTTTCTCGATTCACCAGGAACGAGTTTAGTCTCGAGTCTAAATCAACGATCGGGGTCGAGTTCGCGACTCGTAGCTTGAATGTTAATGAAAAAGTCATCAAAGCCCAGATTTGGGACACTGCTGGTCAAGAAAGATACCGAGCAATCACTAGTGCTTACTATCGAGGAGCTGTTGGGGCGCTTCTTGTTTACGACGTAACCCGACACTCAACATTCGAAAACGTTGAGAGATGGCTAAGGGAACTCCGTGACCACACTGACCCAAACATAGTTGTGATGCTTGTGGGAAACAAATCCGATCTTCGCCATCTTGTAGCAGTCCAAACCGAAGATGCAAAATCTTTTGCAGAGAATGAATCACTCTACTTCATGGAAACCTCAGCTCTTGAATCTACCAATGTTGAGAACGCGTTTTCTGAAGTACTCACTCAGATTTACCATGTTGTGAGCAAGAAAGCAATGGAGGCTGGTGAAGATTCCGGTAATGTTCCTTCGAAAGGAGAGAAGATCGATGTTGATGTTTCCGCAGTGAAGAAAACTGGTTGCTGCTCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005769 GO:0005773 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032588 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071554 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

214

Amino Acids

23.87

Weight (kDa)

5.21

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 171	6.6e-13	ADP-ribosylation factor family
Ras	PF00071	15 - 175	8.6e-63	Ras family
Roc	PF08477	15 - 129	1.2e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 121	5.4e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18800 AT5G45750
fragaria_vesca	FvH4_3g07350
malus_domestica	MD00G1009500.v1.1 MD05G1295600.v1.1 MD10G1275700.v1.1
prunus_persica	Prupe.4G066500_v2.0.a1
pyrus_communis	pycom05g27460
rosa_chinensis	RchiOBHm_Chr5g0011591
rosa_laevigata	RLG00000031845
rosa_multiflora	Rmu_sc0009001.1_g000012
rosa_roxburghii	Rroxscaffold_1G00064900
rosa_rugosa	Rorug04G0457900
rosa_samantha	Rh5AG089600 Rh5BG084900 Rh5CG099000 Rh5DG084900
rosa_wichuraiana	Rw5G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	152, 497
AciI	CCGC	2 cut(s)	5, 612
AclI	AACGTT	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	4 cut(s)	43, 198, 199, 584
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	43, 166, 476
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	162, 257, 470
AluI	AGCT	3 cut(s)	162, 257, 470
Alw26I	GTCTC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	268
AsuHPI	GGTGA	3 cut(s)	71, 91, 569
AsuII	TTCGAA	2 cut(s)	303, 581
AvaI	CYCGRG	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
BbvCI	CCTCAGC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	2 cut(s)	312, 402
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	122
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	635
BmcAI	AGTACT	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	354, 409
Bpu10I	CCTNAGC	2 cut(s)	323, 466
Bpu14I	TTCGAA	2 cut(s)	303, 581
Bsa29I	ATCGAT	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 198, 199, 584
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	103
BseCI	ATCGAT	1 cut(s)	597
BseLI	CCNNNNNNNGG	4 cut(s)	43, 198, 199, 584
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	480, 530
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	620
Bsh1236I	CGCG	2 cut(s)	152, 497
Bsh1285I	CGRYCG	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	597
BsiEI	CGRYCG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	567
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	4 cut(s)	43, 198, 199, 584
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	119
Bsp119I	TTCGAA	2 cut(s)	303, 581
Bsp143I	GATC	4 cut(s)	54, 135, 385, 594
Bsp68I	TCGCGA	1 cut(s)	152
BspACI	CCGC	2 cut(s)	5, 612
BspCNI	CTCAG	2 cut(s)	479, 529
BspDI	ATCGAT	1 cut(s)	597
BspFNI	CGCG	2 cut(s)	152, 497
BspT104I	TTCGAA	2 cut(s)	303, 581
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	631
BssMI	GATC	4 cut(s)	54, 135, 385, 594
Bst2UI	CCWGG	1 cut(s)	103
BstBI	TTCGAA	2 cut(s)	303, 581
BstDEI	CTNAG	3 cut(s)	323, 466, 516
BstENI	CCTNNNNNAGG	2 cut(s)	41, 582
BstFNI	CGCG	2 cut(s)	152, 497
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	4 cut(s)	57, 138, 388, 597
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	4 cut(s)	54, 135, 385, 594
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 551
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstUI	CGCG	2 cut(s)	152, 497
BstV1I	GCAGC	1 cut(s)	620
Bsu15I	ATCGAT	1 cut(s)	597
BsuTUI	ATCGAT	1 cut(s)	597
BtsI	GCAGTG	2 cut(s)	204, 621
BtsIMutI	CAGTG	3 cut(s)	204, 342, 621
BtuMI	TCGCGA	1 cut(s)	152
CfoI	GCGC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	2 cut(s)	457, 527
CviJI	RGCY	6 cut(s)	162, 191, 257, 322, 470, 554
CviKI_1	RGCY	6 cut(s)	162, 191, 257, 322, 470, 554
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	3 cut(s)	323, 466, 516
DpnI	GATC	4 cut(s)	56, 137, 387, 596
DpnII	GATC	4 cut(s)	54, 135, 385, 594
Eco57I	CTGAAG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	2 cut(s)	41, 582
EcoRII	CCWGG	1 cut(s)	101
FaeI	CATG	2 cut(s)	460, 530
FaiI	YATR	3 cut(s)	356, 458, 528
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	456, 526
Fnu4HI	GCNGC	1 cut(s)	634
Fsp4HI	GCNGC	1 cut(s)	634
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	634
HaeII	RGCGCY	1 cut(s)	269
HapII	CCGG	1 cut(s)	567
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	2 cut(s)	460, 530
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	7 cut(s)	62, 96, 122, 154, 443, 476, 563
HpaII	CCGG	1 cut(s)	567
HphI	GGTGA	3 cut(s)	71, 91, 569
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	4 cut(s)	54, 385, 505, 519
Hpy188III	TCNNGA	5 cut(s)	93, 119, 151, 215, 473
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	588
HpyCH4IV	ACGT	2 cut(s)	282, 309
HpyCH4V	TGCA	2 cut(s)	422, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 551
HpyF3I	CTNAG	3 cut(s)	323, 466, 516
HpySE526I	ACGT	2 cut(s)	282, 309
Hsp92II	CATG	2 cut(s)	460, 530
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	4 cut(s)	54, 135, 385, 594
LmnI	GCTCC	2 cut(s)	254, 641
LpnPI	CCDG	8 cut(s)	51, 88, 115, 195, 206, 540, 580, 612
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	2 cut(s)	354, 409
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	282, 309
MaeIII	GTNAC	3 cut(s)	8, 283, 335
MalI	GATC	4 cut(s)	56, 137, 387, 596
MboI	GATC	4 cut(s)	54, 135, 385, 594
MboII	GAAGA	5 cut(s)	380, 428, 572, 604, 631
MluCI	AATT	1 cut(s)	82
MluI	ACGCGT	1 cut(s)	495
MlyI	GAGTC	2 cut(s)	131, 148
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	3 cut(s)	245, 475, 544
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	1 cut(s)	567
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	2 cut(s)	152, 497
MwoI	GCNNNNNNNGC	2 cut(s)	263, 551
NdeII	GATC	4 cut(s)	54, 135, 385, 594
NlaIII	CATG	2 cut(s)	460, 530
NmuCI	GTSAC	1 cut(s)	335
NruI	TCGCGA	1 cut(s)	152
NspV	TTCGAA	2 cut(s)	303, 581
PaeR7I	CTCGAG	1 cut(s)	119
PfeI	GAWTC	5 cut(s)	62, 96, 443, 476, 563
PkrI	GCNGC	1 cut(s)	635
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	2 cut(s)	130, 148
PpsI	GAGTC	2 cut(s)	130, 148
Psp1406I	AACGTT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	138
RruI	TCGCGA	1 cut(s)	152
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	4 cut(s)	54, 135, 385, 594
ScaI	AGTACT	1 cut(s)	510
SchI	GAGTC	2 cut(s)	131, 148
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	9 cut(s)	39, 48, 70, 164, 259, 285, 312, 467, 472
SfaNI	GCATC	2 cut(s)	354, 409
Sfr274I	CTCGAG	1 cut(s)	119
SfuI	TTCGAA	2 cut(s)	303, 581
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	5, 612
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	101
TaiI	ACGT	2 cut(s)	285, 312
TaqI	TCGA	7 cut(s)	94, 120, 144, 250, 303, 581, 597
TasI	AATT	1 cut(s)	82
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	5 cut(s)	62, 96, 443, 476, 563
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	3 cut(s)	211, 349, 621
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	633
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	189, 445, 456
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	3 cut(s)	211, 349, 621
XagI	CCTNNNNNAGG	2 cut(s)	41, 582
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.