Rh5BG084900

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012730
Physical Location & Seq
Reverse (-)
7360855 .. 7365737
4883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG084900.1

Sequence Viewer

Length: 651 bp
ATGGCCGGGTACAGAGCTGAGGACGACTACGACTACCTCTTCAAGGTGGTGTTGATCGGCGACTCGGGTGTGGGCAAGTCCAACTTGCTCTCCAGATTCACCAGGAACGAGTTCAGCCTCGAGTCCAAGTCCACAATTGGGGTCGAGTTCGCCACCCGGAGCTTGGATGTGGACGGAAAAGTCATCAAGGCCCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGAGCAATAACTAGCGCTTATTATCGAGGGGCTGTGGGTGCACTGCTTGTGTATGATGTCACTCGGAATTCAACATTTGAAAGTGTGGAAAGATGGCTAAGGGAGTTAAGAGACCATACTGATCCCAACATTGTTGTCATGCTGGTTGGTAACAAATCAGATCTACGCCACCTTGTGGCAGTCTCAACTGAGGATGGAAAATCCTTTGCCGAGAGAGAGTCCCTCTACTTCATGGAAACTTCTGCACTCGAAGCAACTAATGTGGACAATGCATTTGCTGAAGTCCTTACCCAGATCTTTCACATAGTAAGCAAGAAGACCATGGAGGCTAACAATGATGCAGCTGCTGTTCCTTCCCAAGGAGAGAAAATTGATGTCAGTAAAGATGTTTCAGCTGTGAAGAAAGGTGGGTGCTGTTCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

216

Amino Acids

23.87

Weight (kDa)

5.21

Isoelectric Point (pI)

25.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 14 - 169 4.7e-12 ADP-ribosylation factor family
Ras PF00071 15 - 174 2e-62 Ras family
Roc PF08477 15 - 129 5.5e-35 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 15 - 121 1.6e-06 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012730)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18800 AT5G45750
fragaria_vesca FvH4_3g07350
malus_domestica MD00G1009500.v1.1 MD05G1295600.v1.1 MD10G1275700.v1.1
prunus_persica Prupe.4G066500_v2.0.a1
pyrus_communis pycom05g27460
rosa_chinensis RchiOBHm_Chr5g0011591
rosa_laevigata RLG00000031845
rosa_multiflora Rmu_sc0009001.1_g000012
rosa_roxburghii Rroxscaffold_1G00064900
rosa_rugosa Rorug04G0457900
rosa_samantha Rh5AG089600 Rh5BG084900 Rh5CG099000 Rh5DG084900
rosa_wichuraiana Rw5G007790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 400
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 2 cut(s) 3, 211
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 525
AdeI CACNNNGTG 1 cut(s) 400
AfaI GTAC 2 cut(s) 11, 224
AfeI AGCGCT 1 cut(s) 241
AfiI CCNNNNNNNGG 7 cut(s) 43, 138, 163, 198, 199, 400, 584
AgsI TTSAA 4 cut(s) 43, 297, 305, 645
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 5 cut(s) 17, 162, 569, 620, 648
AluI AGCT 5 cut(s) 17, 162, 569, 620, 648
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 2 cut(s) 330, 412
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 1 cut(s) 341
AlwNI CAGNNNCTG 1 cut(s) 572
Ama87I CYCGRG 2 cut(s) 64, 119
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 3 cut(s) 3, 189, 211
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 566, 569
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 2 cut(s) 7, 157
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 2 cut(s) 64, 119
BaeGI GKGCMC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 556, 578
BccI CCATC 2 cut(s) 312, 413
BciT130I CCWGG 1 cut(s) 103
BcnI CCSGG 2 cut(s) 7, 157
BcoDI GTCTC 2 cut(s) 330, 412
BfaI CTAG 2 cut(s) 237, 649
BfoI RGCGCY 1 cut(s) 243
BglII AGATCT 2 cut(s) 385, 519
BisI GCNGC 2 cut(s) 567, 570
BlsI GCNGC 2 cut(s) 568, 571
Bme1390I CCNGG 3 cut(s) 7, 103, 157
BmeT110I CYCGRG 2 cut(s) 64, 119
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 7, 103, 157
BmsI GCATC 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 548
BplI GAGNNNNNCTC 2 cut(s) 432, 464
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 2 cut(s) 18, 323
BpuMI CCSGG 2 cut(s) 7, 157
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 546, 583
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 138, 163, 198, 199, 400, 584
Bse118I RCCGGY 1 cut(s) 209
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 546, 583
BseGI GGATG 2 cut(s) 172, 424
BseLI CCNNNNNNNGG 7 cut(s) 43, 138, 163, 198, 199, 400, 584
BseMII CTCAG 2 cut(s) 9, 405
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 556, 578
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 3 cut(s) 5, 191, 213
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 2 cut(s) 64, 119
BsiSI CCGG 3 cut(s) 6, 157, 210
BslFI GGGAC 2 cut(s) 215, 430
BslI CCNNNNNNNGG 7 cut(s) 43, 138, 163, 198, 199, 400, 584
BsmAI GTCTC 2 cut(s) 330, 412
BsmFI GGGAC 2 cut(s) 215, 430
BsnI GGCC 3 cut(s) 5, 191, 213
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 2 cut(s) 64, 119
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 4 cut(s) 54, 346, 385, 519
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 3 cut(s) 5, 191, 213
BspCNI CTCAG 2 cut(s) 10, 406
BspPI GGATC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 546, 583
BssMI GATC 4 cut(s) 54, 346, 385, 519
BssT1I CCWWGG 2 cut(s) 546, 583
Bst2UI CCWGG 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 3 cut(s) 18, 323, 414
BstDSI CCRYGG 1 cut(s) 546
BstENI CCTNNNNNAGG 2 cut(s) 41, 582
BstF5I GGATG 2 cut(s) 172, 424
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 4 cut(s) 57, 349, 388, 522
BstMAI GTCTC 2 cut(s) 330, 412
BstMBI GATC 4 cut(s) 54, 346, 385, 519
BstMWI GCNNNNNNNGC 3 cut(s) 263, 476, 645
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 3 cut(s) 5, 101, 155
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 556, 578
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 2 cut(s) 385, 519
BstYI RGATCY 2 cut(s) 385, 519
BsuRI GGCC 3 cut(s) 5, 191, 213
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 172, 424
BtsI GCAGTG 2 cut(s) 204, 266
BtsIMutI CAGTG 2 cut(s) 204, 266
Cac8I GCNNGC 1 cut(s) 211
CaiI CAGNNNCTG 1 cut(s) 572
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 10, 223
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 3 cut(s) 364, 457, 547
CviQI GTAC 2 cut(s) 10, 223
DdeI CTNAG 3 cut(s) 18, 323, 414
DpnI GATC 4 cut(s) 56, 348, 387, 521
DpnII GATC 4 cut(s) 54, 346, 385, 519
DraIII CACNNNGTG 1 cut(s) 400
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 3, 211
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 546, 583
Eco31I GGTCTC 1 cut(s) 330
Eco47III AGCGCT 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 525
Eco88I CYCGRG 2 cut(s) 64, 119
EcoNI CCTNNNNNAGG 2 cut(s) 41, 582
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 546, 583
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 546, 583
FaeI CATG 3 cut(s) 367, 460, 550
FaiI YATR 6 cut(s) 279, 342, 365, 458, 530, 548
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 2 cut(s) 215, 430
FatI CATG 3 cut(s) 363, 456, 546
Fnu4HI GCNGC 2 cut(s) 567, 570
FokI GGATG 2 cut(s) 179, 431
Fsp4HI GCNGC 2 cut(s) 567, 570
FspBI CTAG 2 cut(s) 237, 649
GlaI GCGC 1 cut(s) 241
GluI GCNGC 2 cut(s) 567, 570
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 3 cut(s) 5, 191, 213
HapII CCGG 3 cut(s) 6, 157, 210
HhaI GCGC 1 cut(s) 242
Hin1II CATG 3 cut(s) 367, 460, 550
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 4 cut(s) 62, 96, 122, 443
HpaII CCGG 3 cut(s) 6, 157, 210
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 4 cut(s) 132, 172, 266, 490
Hpy188I TCNGA 2 cut(s) 291, 385
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 4 cut(s) 132, 172, 266, 490
HpyAV CCTTC 1 cut(s) 588
HpyCH4V TGCA 4 cut(s) 266, 470, 497, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 476, 645
HpyF3I CTNAG 3 cut(s) 18, 323, 414
Hsp92II CATG 3 cut(s) 367, 460, 550
HspAI GCGC 1 cut(s) 240
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 4 cut(s) 54, 346, 385, 519
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 9 cut(s) 19, 88, 106, 115, 170, 206, 223, 353, 530
Lsp1109I GCAGC 2 cut(s) 556, 578
LweI GCATC 1 cut(s) 553
MaeI CTAG 2 cut(s) 237, 649
MaeIII GTNAC 2 cut(s) 283, 374
MalI GATC 4 cut(s) 56, 348, 387, 521
MboI GATC 4 cut(s) 54, 346, 385, 519
MboII GAAGA 3 cut(s) 31, 553, 637
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 385, 519
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 3 cut(s) 135, 292, 594
MlyI GAGTC 3 cut(s) 56, 131, 452
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 7 cut(s) 13, 47, 128, 245, 409, 458, 544
Mph1103I ATGCAT 1 cut(s) 499
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 1 cut(s) 332
MspA1I CMGCKG 2 cut(s) 569, 620
MspI CCGG 3 cut(s) 6, 157, 210
MspR9I CCNGG 3 cut(s) 7, 103, 157
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 263, 476, 645
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 2 cut(s) 7, 157
NcoI CCATGG 1 cut(s) 546
NdeII GATC 4 cut(s) 54, 346, 385, 519
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 367, 460, 550
NmeAIII GCCGAG 1 cut(s) 460
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 499
PaeR7I CTCGAG 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 2 cut(s) 568, 571
PleI GAGTC 3 cut(s) 56, 130, 451
PpsI GAGTC 3 cut(s) 56, 130, 451
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspPI GGNCC 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 572
PsuI RGATCY 2 cut(s) 385, 519
PvuII CAGCTG 2 cut(s) 569, 620
RsaI GTAC 2 cut(s) 11, 224
RsaNI GTAC 2 cut(s) 10, 223
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 567, 570
Sau3AI GATC 4 cut(s) 54, 346, 385, 519
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 3 cut(s) 56, 131, 452
ScrFI CCNGG 3 cut(s) 7, 103, 157
SduI GDGCHC 1 cut(s) 268
SfaNI GCATC 1 cut(s) 553
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 3 cut(s) 135, 292, 594
SspMI CTAG 2 cut(s) 237, 649
StyD4I CCNGG 3 cut(s) 5, 101, 155
StyI CCWWGG 2 cut(s) 546, 583
TaqI TCGA 4 cut(s) 120, 144, 250, 474
TasI AATT 3 cut(s) 135, 292, 594
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 211, 273
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 2 cut(s) 566, 569
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 211, 273
Van91I CCANNNNNTGG 1 cut(s) 400
VneI GTGCAC 1 cut(s) 264
XagI CCTNNNNNAGG 2 cut(s) 41, 582
XapI RAATTY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 237, 649
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.