Rroxscaffold_1G00064900

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012730
Physical Location & Seq
Forward (+)
86717428 .. 86721637
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064900.1

Sequence Viewer

Length: 720 bp
ATGGCCGGGTACAGAGCTGAGGACGACTACGACTACCTCTTCAAGGTGGTGTTGATCGGCGACTCGGGTGTGGGCAAGTCCAACTTGCTCTCCAGATTCACCAGGAACGAGTTCAGCCTCGAGTCCAAGTCCACAATTGGGGTCGAGTTCGCCACCCGGAGCTTGGATGTGGACGGAAAAGTCATCAAGGCCCAGATTTGGGACACTGCCGGCCAAGAAAGAATCCAACAGCTACCGGCCTTTTTGGTTGAAAATTTGAAATTAGTTTTTGCTGATGGTGGTGCTTACAAGTACAGAGCAATAACTAGCGCCTATTATCGAGGGGCTGTGGGTGCACTGCTTGTGTATGATGTCACTCGGAATTCAACATTTGAAAGTGTGGAAAGATGGCTAAGGGAGCTAAGAGACCATACTGATCCCAACATTGTTGTCATGCTGGTTGGTAACAAATCAGATCTACGCCACCTTGTGGCAGTCTCAACTGAGGATGGAAAATCCTTTGCCGAGAGAGAGTCCCTCTACTTCATGGAAACTTCTGCACTCGAAGCAACTAATGTGGACAATGCATTTGCTGAAGTCCTTACCCAGATCTTTCACATAGTAAGCAAGAAGACCATGGAGGCTAACAATGATGCAGCTGCTGTTCCTTCCCAAGGAGAGAAAATTGATGTCAGTAAAGATGTTTCAGCTGTGAAGAAAGGCGGGTGCTGTTCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

239

Amino Acids

26.39

Weight (kDa)

5.23

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 15 - 84 8.8e-24 Ras family
Roc PF08477 15 - 85 2.2e-19 Ras of Complex, Roc, domain of DAPkinase
Roc PF08477 93 - 152 5.6e-10 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 94 - 197 2.5e-32 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012730)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18800 AT5G45750
fragaria_vesca FvH4_3g07350
malus_domestica MD00G1009500.v1.1 MD05G1295600.v1.1 MD10G1275700.v1.1
prunus_persica Prupe.4G066500_v2.0.a1
pyrus_communis pycom05g27460
rosa_chinensis RchiOBHm_Chr5g0011591
rosa_laevigata RLG00000031845
rosa_multiflora Rmu_sc0009001.1_g000012
rosa_roxburghii Rroxscaffold_1G00064900
rosa_rugosa Rorug04G0457900
rosa_samantha Rh5AG089600 Rh5BG084900 Rh5CG099000 Rh5DG084900
rosa_wichuraiana Rw5G007790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 469
AciI CCGC 1 cut(s) 702
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 2 cut(s) 3, 211
AcsI RAATTY 2 cut(s) 253, 361
AcuI CTGAAG 1 cut(s) 594
AdeI CACNNNGTG 1 cut(s) 469
AfaI GTAC 2 cut(s) 11, 293
AfiI CCNNNNNNNGG 7 cut(s) 43, 138, 163, 198, 199, 469, 653
AgsI TTSAA 6 cut(s) 43, 251, 259, 366, 374, 714
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 7 cut(s) 17, 162, 232, 400, 638, 689, 717
AluI AGCT 7 cut(s) 17, 162, 232, 400, 638, 689, 717
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 2 cut(s) 399, 481
Alw44I GTGCAC 1 cut(s) 333
AlwI GGATC 1 cut(s) 410
AlwNI CAGNNNCTG 1 cut(s) 641
Ama87I CYCGRG 2 cut(s) 64, 119
AoxI GGCC 4 cut(s) 3, 189, 211, 237
ApaLI GTGCAC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 635, 638
ApoI RAATTY 2 cut(s) 253, 361
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 2 cut(s) 7, 157
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 2 cut(s) 64, 119
BaeGI GKGCMC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 625, 647
BccI CCATC 3 cut(s) 269, 381, 482
BciT130I CCWGG 1 cut(s) 103
BcnI CCSGG 2 cut(s) 7, 157
BcoDI GTCTC 2 cut(s) 399, 481
BfaI CTAG 2 cut(s) 306, 718
BfoI RGCGCY 1 cut(s) 312
BglII AGATCT 2 cut(s) 454, 588
BisI GCNGC 2 cut(s) 636, 639
BlsI GCNGC 2 cut(s) 637, 640
Bme1390I CCNGG 3 cut(s) 7, 103, 157
BmeT110I CYCGRG 2 cut(s) 64, 119
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 3 cut(s) 7, 103, 157
BmsI GCATC 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 617
BplI GAGNNNNNCTC 2 cut(s) 501, 533
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 2 cut(s) 18, 392
BpuMI CCSGG 2 cut(s) 7, 157
BsaI GGTCTC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 615, 652
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 138, 163, 198, 199, 469, 653
Bse118I RCCGGY 2 cut(s) 209, 235
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 615, 652
BseGI GGATG 2 cut(s) 172, 493
BseLI CCNNNNNNNGG 7 cut(s) 43, 138, 163, 198, 199, 469, 653
BseMII CTCAG 2 cut(s) 9, 474
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 2 cut(s) 625, 647
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 4 cut(s) 5, 191, 213, 239
BsiHKAI GWGCWC 1 cut(s) 337
BsiHKCI CYCGRG 2 cut(s) 64, 119
BsiSI CCGG 4 cut(s) 6, 157, 210, 236
BslFI GGGAC 2 cut(s) 215, 499
BslI CCNNNNNNNGG 7 cut(s) 43, 138, 163, 198, 199, 469, 653
BsmAI GTCTC 2 cut(s) 399, 481
BsmFI GGGAC 2 cut(s) 215, 499
BsnI GGCC 4 cut(s) 5, 191, 213, 239
Bso31I GGTCTC 1 cut(s) 399
BsoBI CYCGRG 2 cut(s) 64, 119
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 4 cut(s) 54, 415, 454, 588
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 1 cut(s) 702
BspANI GGCC 4 cut(s) 5, 191, 213, 239
BspCNI CTCAG 2 cut(s) 10, 475
BspPI GGATC 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 399
BsrFI RCCGGY 2 cut(s) 209, 235
BssAI RCCGGY 2 cut(s) 209, 235
BssECI CCNNGG 2 cut(s) 615, 652
BssMI GATC 4 cut(s) 54, 415, 454, 588
BssT1I CCWWGG 2 cut(s) 615, 652
Bst2UI CCWGG 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 4 cut(s) 18, 392, 401, 483
BstDSI CCRYGG 1 cut(s) 615
BstENI CCTNNNNNAGG 2 cut(s) 41, 651
BstF5I GGATG 2 cut(s) 172, 493
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 4 cut(s) 57, 418, 457, 591
BstMAI GTCTC 2 cut(s) 399, 481
BstMBI GATC 4 cut(s) 54, 415, 454, 588
BstMWI GCNNNNNNNGC 4 cut(s) 332, 397, 545, 714
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 3 cut(s) 5, 101, 155
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 625, 647
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 2 cut(s) 454, 588
BstYI RGATCY 2 cut(s) 454, 588
BsuRI GGCC 4 cut(s) 5, 191, 213, 239
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 2 cut(s) 172, 493
BtsI GCAGTG 2 cut(s) 204, 335
BtsIMutI CAGTG 2 cut(s) 204, 335
Cac8I GCNNGC 1 cut(s) 211
CaiI CAGNNNCTG 1 cut(s) 641
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 2 cut(s) 209, 235
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 10, 292
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CviAII CATG 3 cut(s) 433, 526, 616
CviQI GTAC 2 cut(s) 10, 292
DdeI CTNAG 4 cut(s) 18, 392, 401, 483
DpnI GATC 4 cut(s) 56, 417, 456, 590
DpnII GATC 4 cut(s) 54, 415, 454, 588
DraIII CACNNNGTG 1 cut(s) 469
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 3, 211
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 615, 652
Eco31I GGTCTC 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 594
Eco88I CYCGRG 2 cut(s) 64, 119
EcoNI CCTNNNNNAGG 2 cut(s) 41, 651
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 615, 652
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 615, 652
FaeI CATG 3 cut(s) 436, 529, 619
FaiI YATR 6 cut(s) 348, 411, 434, 527, 599, 617
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 2 cut(s) 215, 499
FatI CATG 3 cut(s) 432, 525, 615
FauI CCCGC 1 cut(s) 695
Fnu4HI GCNGC 2 cut(s) 636, 639
FokI GGATG 2 cut(s) 179, 500
Fsp4HI GCNGC 2 cut(s) 636, 639
FspBI CTAG 2 cut(s) 306, 718
GlaI GCGC 1 cut(s) 310
GluI GCNGC 2 cut(s) 636, 639
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 4 cut(s) 5, 191, 213, 239
HapII CCGG 4 cut(s) 6, 157, 210, 236
HhaI GCGC 1 cut(s) 311
Hin1II CATG 3 cut(s) 436, 529, 619
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 5 cut(s) 62, 96, 122, 222, 512
HpaII CCGG 4 cut(s) 6, 157, 210, 236
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 4 cut(s) 132, 172, 335, 559
Hpy188I TCNGA 2 cut(s) 360, 454
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 4 cut(s) 132, 172, 335, 559
HpyAV CCTTC 1 cut(s) 657
HpyCH4V TGCA 4 cut(s) 335, 539, 566, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 397, 545, 714
HpyF3I CTNAG 4 cut(s) 18, 392, 401, 483
Hsp92II CATG 3 cut(s) 436, 529, 619
HspAI GCGC 1 cut(s) 309
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 4 cut(s) 54, 415, 454, 588
LmnI GCTCC 2 cut(s) 159, 397
Lsp1109I GCAGC 2 cut(s) 625, 647
LweI GCATC 1 cut(s) 622
MaeI CTAG 2 cut(s) 306, 718
MaeIII GTNAC 2 cut(s) 352, 443
MalI GATC 4 cut(s) 56, 417, 456, 590
MboI GATC 4 cut(s) 54, 415, 454, 588
MboII GAAGA 3 cut(s) 31, 622, 706
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 454, 588
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 5 cut(s) 135, 253, 260, 361, 663
MlyI GAGTC 3 cut(s) 56, 131, 521
MmeI TCCRAC 2 cut(s) 105, 250
MnlI CCTC 7 cut(s) 13, 47, 128, 314, 478, 527, 613
Mph1103I ATGCAT 1 cut(s) 568
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 110
MspA1I CMGCKG 2 cut(s) 638, 689
MspI CCGG 4 cut(s) 6, 157, 210, 236
MspR9I CCNGG 3 cut(s) 7, 103, 157
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 4 cut(s) 332, 397, 545, 714
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 2 cut(s) 7, 157
NcoI CCATGG 1 cut(s) 615
NdeII GATC 4 cut(s) 54, 415, 454, 588
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 436, 529, 619
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 568
PaeR7I CTCGAG 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 96, 222
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 2 cut(s) 637, 640
PleI GAGTC 3 cut(s) 56, 130, 520
PpsI GAGTC 3 cut(s) 56, 130, 520
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspPI GGNCC 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 2 cut(s) 454, 588
PvuII CAGCTG 2 cut(s) 638, 689
RsaI GTAC 2 cut(s) 11, 293
RsaNI GTAC 2 cut(s) 10, 292
SatI GCNGC 2 cut(s) 636, 639
Sau3AI GATC 4 cut(s) 54, 415, 454, 588
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 3 cut(s) 56, 131, 521
ScrFI CCNGG 3 cut(s) 7, 103, 157
SduI GDGCHC 1 cut(s) 337
SfaNI GCATC 1 cut(s) 622
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 5 cut(s) 135, 253, 260, 361, 663
SsiI CCGC 1 cut(s) 702
SspMI CTAG 2 cut(s) 306, 718
StyD4I CCNGG 3 cut(s) 5, 101, 155
StyI CCWWGG 2 cut(s) 615, 652
TaqI TCGA 4 cut(s) 120, 144, 319, 543
TasI AATT 5 cut(s) 135, 253, 260, 361, 663
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 2 cut(s) 96, 222
TscAI CASTG 2 cut(s) 211, 342
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 635, 638
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 514
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 211, 342
Van91I CCANNNNNTGG 1 cut(s) 469
VneI GTGCAC 1 cut(s) 333
XagI CCTNNNNNAGG 2 cut(s) 41, 651
XapI RAATTY 2 cut(s) 253, 361
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 306, 718
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.