AT5G45750

Ras-related protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
18559060 .. 18560945
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45750.1

Sequence Viewer

Length: 651 bp
ATGGCGGGTTACAGAGCAGATGATGAATACGATTACCTATTCAAGGTTGTTCTGATAGGTGATTCAGGTGTGGGCAAATCCAATTTGCTTTCACGATTCACGAAGAACGAGTTTAGTCTCGAGTCAAAATCCACGATCGGGGTCGAGTTCGCGACTCGGAGTTTGAATGTTGATGATAAAGTCATCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCCATCACTAGTGCGTATTACCGAGGAGCTGTTGGAGCGCTTCTTGTCTACGATGTAACCCGACACTCAACATTTGAAAACGTTGAGACTTGGCTGAAAGAACTCAGAAACCACACTGATCCAAACATTGTAGTCATGCTCGTGGGCAACAAATCTGACCTTCGCCATCTCGTGGCTGTTCAGACTGAAGATGCTAAGTCATTCGCCGAGAAAGAATCTCTCTACTTCATGGAAACCTCGGCTCTCGAAGCCACCAATGTTGAGAACGCTTTCGCCGAAGTCCTCACTCAGATTCACCACATTGTGAGCAAGAAGGCGATGGAAGCTGCGAGCGAATCCGCTAATGTTCCATCGAAAGGAGACAAGATCGATATCGGTAAAGATGTTTCAGCTGTGAAGAAAGGTGGATGCTGCTCGAACTAA

Protein Analysis

216

Amino Acids

23.87

Weight (kDa)

5.6

Isoelectric Point (pI)

20.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 14 - 170 3e-13 ADP-ribosylation factor family
Ras PF00071 15 - 175 1.8e-63 Ras family
Roc PF08477 15 - 129 7.5e-36 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 15 - 121 5.6e-07 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012730)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 222
AccB7I CCANNNNNTGG 1 cut(s) 400
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 152
AciI CCGC 2 cut(s) 5, 567
AclI AACGTT 1 cut(s) 309
AclWI GGATC 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 532
AfaI GTAC 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 267
AfiI CCNNNNNNNGG 4 cut(s) 43, 138, 400, 584
AgsI TTSAA 3 cut(s) 43, 166, 305
AhlI ACTAGT 1 cut(s) 236
AluBI AGCT 4 cut(s) 191, 257, 554, 620
AluI AGCT 4 cut(s) 191, 257, 554, 620
Alw26I GTCTC 3 cut(s) 122, 308, 582
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 554, 639
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
Asp700I GAANNNNTTC 1 cut(s) 497
Asp718I GGTACC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 268
AsuHPI GGTGA 2 cut(s) 71, 515
AvaI CYCGRG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 222
BauI CACGAG 2 cut(s) 368, 398
BbvI GCAGC 2 cut(s) 541, 626
BccI CCATC 4 cut(s) 239, 402, 541, 586
BciVI GTATCC 1 cut(s) 196
BcoDI GTCTC 3 cut(s) 122, 308, 582
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 2 cut(s) 555, 640
BlsI GCNGC 2 cut(s) 556, 641
BmeT110I CYCGRG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 224
BmsI GCATC 2 cut(s) 409, 626
Bsa29I ATCGAT 1 cut(s) 597
BsaBI GATNNNNATC 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 250, 465
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 138, 400, 584
Bse8I GATNNNNATC 1 cut(s) 599
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 2 cut(s) 250, 465
BseGI GGATG 1 cut(s) 641
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 4 cut(s) 43, 138, 400, 584
BseMII CTCAG 3 cut(s) 206, 346, 530
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 541, 626
Bsh1236I CGCG 1 cut(s) 152
Bsh1285I CGRYCG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 222
BshVI ATCGAT 1 cut(s) 597
BsiEI CGRYCG 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 119
BslI CCNNNNNNNGG 4 cut(s) 43, 138, 400, 584
BsmAI GTCTC 3 cut(s) 122, 308, 582
BsoBI CYCGRG 1 cut(s) 119
Bsp143I GATC 3 cut(s) 135, 346, 594
Bsp68I TCGCGA 1 cut(s) 152
BspACI CCGC 2 cut(s) 5, 567
BspCNI CTCAG 3 cut(s) 205, 345, 529
BspDI ATCGAT 1 cut(s) 597
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 224
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 250, 465
BssMI GATC 3 cut(s) 135, 346, 594
BssSI CACGAG 2 cut(s) 368, 398
Bst2BI CACGAG 2 cut(s) 368, 398
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 4 cut(s) 192, 332, 423, 516
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 641
BstFNI CGCG 1 cut(s) 152
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 3 cut(s) 138, 349, 597
BstMAI GTCTC 3 cut(s) 122, 308, 582
BstMBI GATC 3 cut(s) 135, 346, 594
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 263, 476, 551
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 541, 626
Bsu15I ATCGAT 1 cut(s) 597
BsuI GTATCC 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 597
BtgZI GCGATG 1 cut(s) 560
BtsCI GGATG 1 cut(s) 641
BtsIMutI CAGTG 1 cut(s) 342
BtuMI TCGCGA 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 559
CfoI GCGC 1 cut(s) 268
ClaI ATCGAT 1 cut(s) 597
Csp6I GTAC 1 cut(s) 223
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 2 cut(s) 364, 457
CviJI RGCY 9 cut(s) 191, 230, 257, 322, 404, 470, 479, 554, 620
CviKI_1 RGCY 9 cut(s) 191, 230, 257, 322, 404, 470, 479, 554, 620
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 4 cut(s) 192, 332, 423, 516
DpnI GATC 3 cut(s) 137, 348, 596
DpnII GATC 3 cut(s) 135, 346, 594
DraIII CACNNNGTG 1 cut(s) 532
Eco32I GATATC 1 cut(s) 601
Eco47III AGCGCT 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 119
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoRV GATATC 1 cut(s) 601
FaeI CATG 2 cut(s) 367, 460
FaiI YATR 2 cut(s) 365, 458
FatI CATG 2 cut(s) 363, 456
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 555, 640
Fsp4HI GCNGC 2 cut(s) 555, 640
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 267
GluI GCNGC 2 cut(s) 555, 640
HaeII RGCGCY 1 cut(s) 269
HhaI GCGC 1 cut(s) 268
Hin1II CATG 2 cut(s) 367, 460
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 7 cut(s) 62, 96, 122, 154, 443, 520, 563
HphI GGTGA 2 cut(s) 71, 515
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 7 cut(s) 54, 159, 195, 335, 385, 411, 519
Hpy188III TCNNGA 6 cut(s) 93, 100, 119, 151, 215, 473
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 398, 535
HpyCH4IV ACGT 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 476, 551
HpyF3I CTNAG 4 cut(s) 192, 332, 423, 516
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 367, 460
HspAI GCGC 1 cut(s) 266
KpnI GGTACC 1 cut(s) 226
Kzo9I GATC 3 cut(s) 135, 346, 594
LmnI GCTCC 2 cut(s) 254, 263
LpnPI CCDG 2 cut(s) 51, 195
Lsp1109I GCAGC 2 cut(s) 541, 626
LweI GCATC 2 cut(s) 409, 626
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 8, 283
MalI GATC 3 cut(s) 137, 348, 596
MboI GATC 3 cut(s) 135, 346, 594
MboII GAAGA 3 cut(s) 115, 428, 637
MluCI AATT 1 cut(s) 82
MlyI GAGTC 2 cut(s) 131, 148
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 3 cut(s) 245, 475, 521
MroXI GAANNNNTTC 1 cut(s) 497
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 620
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 263, 476, 551
NdeII GATC 3 cut(s) 135, 346, 594
NlaIII CATG 2 cut(s) 367, 460
NlaIV GGNNCC 1 cut(s) 224
NmeAIII GCCGAG 2 cut(s) 446, 460
NruI TCGCGA 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 5 cut(s) 62, 96, 443, 520, 563
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 2 cut(s) 556, 641
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 2 cut(s) 130, 148
PpsI GAGTC 2 cut(s) 130, 148
Psp1406I AACGTT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 620
RruI TCGCGA 1 cut(s) 152
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 368
SatI GCNGC 2 cut(s) 555, 640
Sau3AI GATC 3 cut(s) 135, 346, 594
SchI GAGTC 2 cut(s) 131, 148
SfaNI GCATC 2 cut(s) 409, 626
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 1 cut(s) 82
SsiI CCGC 2 cut(s) 5, 567
SspMI CTAG 1 cut(s) 237
TaiI ACGT 1 cut(s) 312
TaqI TCGA 6 cut(s) 120, 144, 474, 581, 597, 644
TasI AATT 1 cut(s) 82
TfiI GAWTC 5 cut(s) 62, 96, 443, 520, 563
TscAI CASTG 1 cut(s) 349
TseI GCWGC 2 cut(s) 554, 639
TspDTI ATGAA 2 cut(s) 39, 445
TspRI CASTG 1 cut(s) 349
Van91I CCANNNNNTGG 1 cut(s) 400
XagI CCTNNNNNAGG 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.