Prupe.4G066500_v2.0.a1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012730
Physical Location & Seq
Reverse (-)
3209591 .. 3213711
4121 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G066500.1

Sequence Viewer

Length: 657 bp
ATGGCTGGGTACAGAGCTGAAGATGACTATGACTATCTCTTCAAGGTGGTGCTGATCGGAGACTCGGGCGTGGGCAAGTCCAACTTGCTCTCCAGGTTCACCAGGAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTTGAGTTCGCCACCCGGAGCTTGGATGTCGATGGAAAAGTCATCAAGGCCCAGATTTGGGACACTGCTGGTCAAGAAAGGTACCGAGCGATAACTAGTGCTTACTATCGAGGGGCTGTGGGTGCACTACTTGTGTACGATGTCACTCGGAATTCAACATTTGAAAGTGTGGAAAGGTGGTTAAAGGAGTTAAGAGACCATACTGATCCCAACATTGTTGTCATGCTTGTTGGTAACAAATCAGATCTTCGTCACCTTGTTGCAGTCTCAACTGAGGATGGAAAATCCTTTGCTGAGAGGGAGTCTCTCTACTTCATGGAAACTTCTGCACTCGAAGCAACCAATGTGGACAATGCATTTGCTGAAGTCCTTACCCAGATCTTTCGTGTCGTAAGCAGGAAGGCCATGGAGGCTGGAGATGAAGCTGCTGCTTCAGCTGTTCCTTCCCAGGGAGAGAAAATCGATATCAGTAAAGATGTTTCGGCTGTGAAGAAAGGTGGCTGTTGCTCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

219

Amino Acids

23.98

Weight (kDa)

5.12

Isoelectric Point (pI)

23.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012730)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18800 AT5G45750
fragaria_vesca FvH4_3g07350
malus_domestica MD00G1009500.v1.1 MD05G1295600.v1.1 MD10G1275700.v1.1
prunus_persica Prupe.4G066500_v2.0.a1
pyrus_communis pycom05g27460
rosa_chinensis RchiOBHm_Chr5g0011591
rosa_laevigata RLG00000031845
rosa_multiflora Rmu_sc0009001.1_g000012
rosa_roxburghii Rroxscaffold_1G00064900
rosa_rugosa Rorug04G0457900
rosa_samantha Rh5AG089600 Rh5BG084900 Rh5CG099000 Rh5DG084900
rosa_wichuraiana Rw5G007790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 222
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 3 cut(s) 39, 525, 558
AfaI GTAC 3 cut(s) 11, 224, 278
AfiI CCNNNNNNNGG 4 cut(s) 163, 198, 199, 590
AgsI TTSAA 3 cut(s) 43, 297, 305
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 3 cut(s) 92, 101, 588
AluBI AGCT 5 cut(s) 17, 162, 566, 578, 654
AluI AGCT 5 cut(s) 17, 162, 566, 578, 654
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 4 cut(s) 54, 330, 412, 450
Alw44I GTGCAC 1 cut(s) 264
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 2 cut(s) 64, 119
AoxI GGCC 2 cut(s) 189, 543
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 566, 569
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp700I GAANNNNTTC 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 91, 386
AvaI CYCGRG 2 cut(s) 64, 119
BaeGI GKGCMC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 553, 556
BccI CCATC 3 cut(s) 143, 167, 413
BciT130I CCWGG 3 cut(s) 94, 103, 590
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 4 cut(s) 54, 330, 412, 450
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 2 cut(s) 237, 655
BglI GCCNNNNNGGC 1 cut(s) 551
BglII AGATCT 2 cut(s) 385, 519
BisI GCNGC 2 cut(s) 567, 570
BlsI GCNGC 2 cut(s) 568, 571
Bme1390I CCNGG 4 cut(s) 94, 103, 157, 590
BmeT110I CYCGRG 2 cut(s) 64, 119
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 4 cut(s) 94, 103, 157, 590
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BpmI CTGGAG 2 cut(s) 76, 576
BpuEI CTTGAG 1 cut(s) 634
BpuMI CCSGG 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 546, 588, 589
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 198, 199, 590
BseBI CCWGG 3 cut(s) 94, 103, 590
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 3 cut(s) 546, 588, 589
BseGI GGATG 2 cut(s) 172, 424
BseLI CCNNNNNNNGG 4 cut(s) 163, 198, 199, 590
BseMII CTCAG 2 cut(s) 405, 426
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 553, 556
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 2 cut(s) 191, 545
BshNI GGYRCC 1 cut(s) 222
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 2 cut(s) 64, 119
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 4 cut(s) 163, 198, 199, 590
BsmAI GTCTC 4 cut(s) 54, 330, 412, 450
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 2 cut(s) 191, 545
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 2 cut(s) 64, 119
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 4 cut(s) 54, 346, 385, 519
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 2 cut(s) 191, 545
BspCNI CTCAG 2 cut(s) 406, 427
BspDI ATCGAT 1 cut(s) 603
BspLI GGNNCC 1 cut(s) 224
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 330
BssECI CCNNGG 3 cut(s) 546, 588, 589
BssMI GATC 4 cut(s) 54, 346, 385, 519
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 3 cut(s) 94, 103, 590
Bst6I CTCTTC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 414, 435
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 172, 424
BstKTI GATC 4 cut(s) 57, 349, 388, 522
BstMAI GTCTC 4 cut(s) 54, 330, 412, 450
BstMBI GATC 4 cut(s) 54, 346, 385, 519
BstMWI GCNNNNNNNGC 4 cut(s) 263, 476, 551, 575
BstNI CCWGG 3 cut(s) 94, 103, 590
BstSCI CCNGG 4 cut(s) 92, 101, 155, 588
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 553, 556
BstX2I RGATCY 2 cut(s) 385, 519
BstYI RGATCY 2 cut(s) 385, 519
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 2 cut(s) 191, 545
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 172, 424
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 3 cut(s) 10, 223, 277
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 3 cut(s) 364, 457, 547
CviQI GTAC 3 cut(s) 10, 223, 277
DdeI CTNAG 2 cut(s) 414, 435
DpnI GATC 4 cut(s) 56, 348, 387, 521
DpnII GATC 4 cut(s) 54, 346, 385, 519
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 330
Eco32I GATATC 1 cut(s) 607
Eco57I CTGAAG 3 cut(s) 39, 525, 558
Eco88I CYCGRG 2 cut(s) 64, 119
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 3 cut(s) 92, 101, 588
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 546
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 3 cut(s) 367, 460, 550
FaiI YATR 5 cut(s) 30, 342, 365, 458, 548
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 215
FatI CATG 3 cut(s) 363, 456, 546
Fnu4HI GCNGC 2 cut(s) 567, 570
FokI GGATG 2 cut(s) 179, 431
Fsp4HI GCNGC 2 cut(s) 567, 570
FspBI CTAG 2 cut(s) 237, 655
GluI GCNGC 2 cut(s) 567, 570
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 2 cut(s) 76, 576
HaeIII GGCC 2 cut(s) 191, 545
HapII CCGG 1 cut(s) 157
Hin1II CATG 3 cut(s) 367, 460, 550
HinfI GANTC 3 cut(s) 62, 122, 443
HpaII CCGG 1 cut(s) 157
HphI GGTGA 2 cut(s) 91, 386
Hpy166II GTNNAC 5 cut(s) 99, 132, 266, 277, 490
Hpy188I TCNGA 3 cut(s) 59, 291, 385
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 5 cut(s) 99, 132, 266, 277, 490
HpyAV CCTTC 2 cut(s) 535, 594
HpyCH4V TGCA 4 cut(s) 266, 404, 470, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 476, 551, 575
HpyF3I CTNAG 2 cut(s) 414, 435
Hsp92II CATG 3 cut(s) 367, 460, 550
KpnI GGTACC 1 cut(s) 226
Kzo9I GATC 4 cut(s) 54, 346, 385, 519
LmnI GCTCC 1 cut(s) 159
Lsp1109I GCAGC 2 cut(s) 553, 556
MaeI CTAG 2 cut(s) 237, 655
MaeIII GTNAC 3 cut(s) 283, 374, 392
MalI GATC 4 cut(s) 56, 348, 387, 521
MboI GATC 4 cut(s) 54, 346, 385, 519
MboII GAAGA 4 cut(s) 31, 32, 380, 643
MflI RGATCY 2 cut(s) 385, 519
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 1 cut(s) 292
MlyI GAGTC 3 cut(s) 56, 131, 452
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 5 cut(s) 128, 245, 409, 432, 544
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 2 cut(s) 323, 332
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 4 cut(s) 94, 103, 157, 590
MvaI CCWGG 3 cut(s) 94, 103, 590
MwoI GCNNNNNNNGC 4 cut(s) 263, 476, 551, 575
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 546
NdeII GATC 4 cut(s) 54, 346, 385, 519
NlaIII CATG 3 cut(s) 367, 460, 550
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 2 cut(s) 283, 392
NsiI ATGCAT 1 cut(s) 499
PaeR7I CTCGAG 1 cut(s) 119
PasI CCCWGGG 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 568, 571
PleI GAGTC 3 cut(s) 56, 130, 451
PpsI GAGTC 3 cut(s) 56, 130, 451
Psp6I CCWGG 3 cut(s) 92, 101, 588
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 3 cut(s) 92, 101, 588
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 190
PspXI VCTCGAGB 1 cut(s) 119
PsuI RGATCY 2 cut(s) 385, 519
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 3 cut(s) 11, 224, 278
RsaNI GTAC 3 cut(s) 10, 223, 277
SaqAI TTAA 2 cut(s) 323, 332
SatI GCNGC 2 cut(s) 567, 570
Sau3AI GATC 4 cut(s) 54, 346, 385, 519
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 3 cut(s) 56, 131, 452
ScrFI CCNGG 4 cut(s) 94, 103, 157, 590
SduI GDGCHC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 119, 649
SmoI CTYRAG 2 cut(s) 119, 649
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 1 cut(s) 292
SspMI CTAG 2 cut(s) 237, 655
StyD4I CCNGG 4 cut(s) 92, 101, 155, 588
StyI CCWWGG 1 cut(s) 546
TaqI TCGA 5 cut(s) 120, 171, 250, 474, 603
TasI AATT 1 cut(s) 292
Tru1I TTAA 2 cut(s) 323, 332
Tru9I TTAA 2 cut(s) 323, 332
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 2 cut(s) 283, 392
TseI GCWGC 2 cut(s) 566, 569
Tsp45I GTSAC 2 cut(s) 283, 392
TspDTI ATGAA 2 cut(s) 445, 576
TspRI CASTG 1 cut(s) 211
VneI GTGCAC 1 cut(s) 264
XapI RAATTY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 237, 655
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.