Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010224

Physical Location & Seq

Genomic Coordinates Reverse (-)

10406694 .. 10409057

Gene Structure 2364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19003.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAGAAATTGGCTGATTTCAAGCTTCCTCAATTCTTCAATTATCCTCCATACTTCACTTTGCAGCCTGTGAGGGACACTCGTGAGAAACAGATACAGCTCTGGAAAGAGCTTATTTTGGATTACTGCAAATCCCAAAAGATTTTCTTGATTGGTGTTGAAGAAGATTTCCCTCTCTTCTCAAACTCTGCCATTGATAGATCTCTAAGTCATGAAGCAAGGGAAACATTTCTTTCAGCCATTGTTGGTGAAGGGCGTGCGGAGTGGTTAGATAAAGGGCATAGGAAATGTCTTATTCTGTGGCACCGGATTCAAGATTGGGCAGACATTGTTCTTCAGTTTGTGAGAGATAATGGATTAGAGGACAGTGTTATGACTGTTGAAGAAATACGTTCAGGGACAGAATCACTTGGAACAGAACTTCAAGGGATTGATCGGACGATTCTAATGAGGGCCTTAAAGCTGCTAGAGAACAAGGGCAAGCTTGCATTGTTCAAGGGAACATCAGCAGATGATGAAGGCGTCAAGTTCTCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042802 GO:0042803 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ESCRT-II

Protein Analysis

179

Amino Acids

20.68

Weight (kDa)

5.48

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ESCRT-II	PF05871	12 - 145	1.5e-45	ESCRT-II complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003
fragaria_vesca	FvH4_5g23270 FvH4_5g23270 FvH4_5g23270
malus_domestica	MD11G1243800.v1.1
prunus_persica	Prupe.4G182100_v2.0.a1
pyrus_communis	pycom11g21630
rosa_chinensis	RchiOBHm_Chr7g0212211
rosa_laevigata	RLG00000002915
rosa_multiflora	Rmu_sc0002283.1_g000056
rosa_roxburghii	Rroxscaffold_3G00247030
rosa_rugosa	Rorug07G0132000 Rorug07G0132100
rosa_samantha	Rh7BG259300
rosa_wichuraiana	Rw7G022630 Rw7G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	303
AciI	CCGC	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	522
AgsI	TTSAA	7 cut(s)	22, 40, 161, 314, 383, 425, 496
AluBI	AGCT	5 cut(s)	25, 100, 112, 463, 484
AluI	AGCT	5 cut(s)	25, 100, 112, 463, 484
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	64, 463
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	303
BauI	CACGAG	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	76, 450
BfaI	CTAG	1 cut(s)	467
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	65, 464
BlsI	GCNGC	2 cut(s)	66, 465
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BsaHI	GRCGYC	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	76, 450
BshFI	GGCC	1 cut(s)	455
BshNI	GGYRCC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	89, 412
BsmFI	GGGAC	2 cut(s)	89, 412
BsnI	GGCC	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	200, 433
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	455
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	303
BssMI	GATC	2 cut(s)	200, 433
BssNI	GRCGYC	1 cut(s)	522
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	368, 379
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	522
BstC8I	GCNNGC	3 cut(s)	258, 482, 486
BstDEI	CTNAG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	203, 436
BstMBI	GATC	2 cut(s)	200, 433
BstV1I	GCAGC	2 cut(s)	76, 450
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	258, 482, 486
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	453
CseI	GACGC	1 cut(s)	511
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	9 cut(s)	14, 25, 67, 100, 112, 239, 455, 463, 484
CviKI_1	RGCY	9 cut(s)	14, 25, 67, 100, 112, 239, 455, 463, 484
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	202, 435
DpnII	GATC	2 cut(s)	200, 433
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	453
FaeI	CATG	1 cut(s)	215
FaiI	YATR	4 cut(s)	52, 213, 282, 374
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	2 cut(s)	89, 412
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	65, 464
Fsp4HI	GCNGC	2 cut(s)	65, 464
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	2 cut(s)	65, 464
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	511
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	1 cut(s)	215
HindIII	AAGCTT	2 cut(s)	23, 482
HinfI	GANTC	3 cut(s)	310, 404, 442
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	438, 539
Hpy188III	TCNNGA	5 cut(s)	83, 103, 148, 212, 314
HpyAV	CCTTC	2 cut(s)	245, 512
HpyCH4III	ACNGT	2 cut(s)	368, 379
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	4, 64, 129, 488
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	200, 433
LpnPI	CCDG	4 cut(s)	81, 88, 320, 381
Lsp1109I	GCAGC	2 cut(s)	76, 450
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	391
MalI	GATC	2 cut(s)	202, 435
MboI	GATC	2 cut(s)	200, 433
MboII	GAAGA	6 cut(s)	28, 169, 173, 176, 326, 395
MflI	RGATCY	1 cut(s)	200
MluCI	AATT	3 cut(s)	8, 32, 40
MnlI	CCTC	6 cut(s)	39, 57, 66, 183, 355, 444
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	1 cut(s)	458
MspI	CCGG	1 cut(s)	307
NdeII	GATC	2 cut(s)	200, 433
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	310, 404, 442
PkrI	GCNGC	2 cut(s)	66, 465
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	2 cut(s)	65, 464
Sau3AI	GATC	2 cut(s)	200, 433
Sau96I	GGNCC	1 cut(s)	453
SetI	ASST	6 cut(s)	27, 102, 114, 394, 465, 486
Sse9I	AATT	3 cut(s)	8, 32, 40
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	368, 379
TaiI	ACGT	1 cut(s)	394
TasI	AATT	3 cut(s)	8, 32, 40
TfiI	GAWTC	3 cut(s)	310, 404, 442
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	2 cut(s)	64, 463
TspDTI	ATGAA	2 cut(s)	228, 531
TspRI	CASTG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.