Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010224

Physical Location & Seq

Genomic Coordinates Forward (+)

23602641 .. 23609523

Gene Structure 6883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGACTTGCGCTTCCGCTTCTGCTTTCGCTTTGTATGGTAGAAATAAAATTTCTTGGTCAACACCCAAAGCCTCCAACCCTCTCTCAAACACTCAAACGGTGATTGCGCCGGCCACCGGAATCGCTCCTTTTGAACCACCGACACGCAGTAATTGGGTCAGTAAAGAGATGCAGAAATTGGGTGATTACAAGCTGCCTCAGTTCTTCAATTATCCTCCCTACTTCACGTTACAACCAGTAAGGGATACGCGTGAGAAGCAGATACAACTATGGAAGGAGCTTATTCTTGATTACTGTAGAACACAGAAGATCTTTGTAATTGGACTGGAAGAAGACTTTCCTCTTTTTTCAAATCCTGTGATTGAAAGATCTCTCAGTCATGAAGCCAGGGAAGCATTCCTCTCAATTTTGGTTTCAGATGGTCGTGCAGAATGGTTAGATAAAAGGCATGGGAAATGTCTAATCCTCTGGCACAGGATTCAAGAGTGGGCTAACATAATTCTGAACTTCGTAAAAGAAAATGGATTGGAGGACAGCGTTATGACTGTTGAGGAAATATGTTCTGGGATAGAATCAAGAGGAACAGAGCTTCACGGTATTGACCGCACAATTCTGATGCGAGCTCTAAAACTACTAGAACAGAAGGGTAAGCTTGCAATCTTCAAGGGGACTACAGCTGATGATGAGGGTGTGAAATTCTCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042802 GO:0042803 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ESCRT-II

Protein Analysis

235

Amino Acids

26.79

Weight (kDa)

6.91

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ESCRT-II	PF05871	68 - 201	1.9e-46	ESCRT-II complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003
fragaria_vesca	FvH4_5g23270 FvH4_5g23270 FvH4_5g23270
malus_domestica	MD11G1243800.v1.1
prunus_persica	Prupe.4G182100_v2.0.a1
pyrus_communis	pycom11g21630
rosa_chinensis	RchiOBHm_Chr7g0212211
rosa_laevigata	RLG00000002915
rosa_multiflora	Rmu_sc0002283.1_g000056
rosa_roxburghii	Rroxscaffold_3G00247030
rosa_rugosa	Rorug07G0132000 Rorug07G0132100
rosa_samantha	Rh7BG259300
rosa_wichuraiana	Rw7G022630 Rw7G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	250
AciI	CCGC	2 cut(s)	15, 604
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	48, 695
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	6 cut(s)	134, 208, 351, 365, 482, 664
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	6 cut(s)	193, 280, 589, 623, 652, 677
AluI	AGCT	6 cut(s)	193, 280, 589, 623, 652, 677
Alw21I	GWGCWC	1 cut(s)	625
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	48, 695
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	2 cut(s)	11, 109
AsuHPI	GGTGA	2 cut(s)	112, 194
BanII	GRGCYC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	388
BciVI	GTATCC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	635
BfmI	CTRYAG	2 cut(s)	295, 672
BfuI	GTATCC	1 cut(s)	238
BglII	AGATCT	2 cut(s)	309, 368
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	2 cut(s)	159, 606
BpiI	GAAGAC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	236, 330
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	212, 388
BseNI	ACTGG	2 cut(s)	236, 330
BseXI	GCAGC	1 cut(s)	180
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	110, 117
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	2 cut(s)	309, 368
BspACI	CCGC	2 cut(s)	15, 604
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	211, 387
BspFNI	CGCG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	236, 330
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	2 cut(s)	309, 368
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	4 cut(s)	100, 296, 547, 596
BstC8I	GCNNGC	3 cut(s)	111, 621, 654
BstDEI	CTNAG	2 cut(s)	198, 374
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	11, 109
BstKTI	GATC	2 cut(s)	312, 371
BstMBI	GATC	2 cut(s)	309, 368
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 392
BstNI	CCWGG	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	386
BstSFI	CTRYAG	2 cut(s)	295, 672
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	309, 368
BstYI	RGATCY	2 cut(s)	309, 368
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	111, 621, 654
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	11, 109
Cfr10I	RCCGGY	1 cut(s)	109
CviAII	CATG	2 cut(s)	380, 449
DdeI	CTNAG	2 cut(s)	198, 374
DpnI	GATC	2 cut(s)	311, 370
DpnII	GATC	2 cut(s)	309, 368
EaeI	YGGCCR	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	623
Eco24I	GRGCYC	1 cut(s)	625
Eco53kI	GAGCTC	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	625
FaeI	CATG	2 cut(s)	383, 452
FaiI	YATR	7 cut(s)	36, 271, 381, 450, 497, 542, 559
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	2 cut(s)	379, 448
Fnu4HI	GCNGC	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	635
GlaI	GCGC	2 cut(s)	10, 108
GluI	GCNGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	110, 117
HhaI	GCGC	2 cut(s)	11, 109
Hin1II	CATG	2 cut(s)	383, 452
Hin6I	GCGC	2 cut(s)	9, 107
HinP1I	GCGC	2 cut(s)	9, 107
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	3 cut(s)	120, 478, 572
HpaII	CCGG	2 cut(s)	110, 117
HphI	GGTGA	2 cut(s)	112, 194
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	4 cut(s)	418, 504, 615, 707
Hpy188III	TCNNGA	4 cut(s)	287, 380, 482, 576
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	268, 637
HpyCH4III	ACNGT	4 cut(s)	100, 296, 547, 596
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	172, 428, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 392
HpyF3I	CTNAG	2 cut(s)	198, 374
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	383, 452
HspAI	GCGC	2 cut(s)	9, 107
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	309, 368
LmnI	GCTCC	2 cut(s)	130, 277
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	2 cut(s)	159, 606
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	2 cut(s)	311, 370
MboI	GATC	2 cut(s)	309, 368
MboII	GAAGA	5 cut(s)	196, 319, 341, 344, 652
MflI	RGATCY	2 cut(s)	309, 368
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	9 cut(s)	48, 151, 176, 208, 318, 405, 498, 609, 695
MluI	ACGCGT	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	99
MroNI	GCCGGC	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	2 cut(s)	110, 117
MspR9I	CCNGG	1 cut(s)	388
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	256, 392
NaeI	GCCGGC	1 cut(s)	111
NdeII	GATC	2 cut(s)	309, 368
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	383, 452
PagI	TCATGA	1 cut(s)	379
PctI	GAATGC	1 cut(s)	395
PdiI	GCCGGC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	120, 478, 572
PkrI	GCNGC	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	309, 368
PvuII	CAGCTG	1 cut(s)	677
SacI	GAGCTC	1 cut(s)	625
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	309, 368
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	625
SetI	ASST	7 cut(s)	195, 230, 282, 591, 625, 654, 679
SfaNI	GCATC	2 cut(s)	159, 606
SfcI	CTRYAG	2 cut(s)	295, 672
Sse9I	AATT	9 cut(s)	48, 151, 176, 208, 318, 405, 498, 609, 695
SsiI	CCGC	2 cut(s)	15, 604
SspMI	CTAG	1 cut(s)	635
SstI	GAGCTC	1 cut(s)	625
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	4 cut(s)	100, 296, 547, 596
TaiI	ACGT	1 cut(s)	230
TasI	AATT	9 cut(s)	48, 151, 176, 208, 318, 405, 498, 609, 695
TfiI	GAWTC	3 cut(s)	120, 478, 572
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	396
XapI	RAATTY	2 cut(s)	48, 695
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.