Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009043

Physical Location & Seq

Genomic Coordinates Reverse (-)

10415941 .. 10418375

Gene Structure 2435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0132000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCCGGGCCCCGGTCCGCACCTGATGTACGCCATGGGTTCGGGTCTGGCTCTGACCACTCTCACCAACGGCAGGTTCAGCCCCCACCACACCCTGATCTATACCGTCAACGCCTTCTTCGGCCCCGACATCGGATCCTTCACCGAATGGCTGGCCTCCCTCGTCGGCGGCTTCGGCTTCGACTTCGGCTCCGAGCTCGCTGACGCCATCCACCACCCCTTCTACTACGTCATCATTCTTGGCCTCCCTCTTTGTATTCTCTACTCCTGGCTCTCCAGAATCTTCCTCCTCAATAGGGTCCTCGACTCCTTCCCTCCGGTTCCCCTAACAAAGTTGCAGTGCATCTTGTTGGTGTCAGCCGGTTCTTTGTCACATTTTTTCCTCGATCACTTGTTCGAGGAAAATGGGCATTCTGGTACGTATACATGGATTTTGAGCACTGGTTGGTGGGAGGGCCGCGCACCTATTAATCCAGATGCTGTTGTTGTCGTCGGCCTTTTATGCATTGGCTTAATTGGTGGCTTTATTTACATCAACAGAGTTAAGCCTCCCAAGTCTGTTAACAAATATTCATCAAATGAATCATTCCAACTAATCATCATCATAGCAAGCCTGTACTGCTTATGGTGCACAAGCCAAGTATACTTGGTTAATCCTCGTCGGCCAGCAGTTGGTGAAGAAGCTGACCTTGGAGTTCTCGTGTTTCTAGCCACTTATCTCTTTTTCCCTCATTTTTTGTGTATATTGTCCATGCACCCAAGAGGTCATGAGGGGTTGCTGCTTCCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042802 GO:0042803 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ESCRT-II

Protein Analysis

263

Amino Acids

29.16

Weight (kDa)

6.39

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68310 AT1G68310
fragaria_vesca	FvH4_5g23251
malus_domestica	MD03G1162900.v1.1 MD11G1178900.v1.1
prunus_persica	Prupe.1G100200_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1
pyrus_communis	pycom03g11550 pycom11g15440
rosa_chinensis	RchiOBHm_Chr7g0212191 RchiOBHm_Chr7g0212201
rosa_laevigata	RLG00000002916
rosa_multiflora	Rmu_sc0002283.1_g000054 Rmu_sc0007204.1_g000023
rosa_roxburghii	Rroxscaffold_3G00247040
rosa_rugosa	Rorug07G0132000
rosa_samantha	Rh7BG259200
rosa_wichuraiana	Rw7G022610 Rw7G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccI	GTMKAC	2 cut(s)	422, 642
AccII	CGCG	1 cut(s)	459
AciI	CCGC	3 cut(s)	17, 168, 457
AclWI	GGATC	2 cut(s)	129, 142
AcoI	YGGCCR	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	3 cut(s)	29, 418, 617
AfiI	CCNNNNNNNGG	5 cut(s)	11, 72, 131, 295, 671
AjnI	CCWGG	1 cut(s)	266
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 672, 704
AluBI	AGCT	2 cut(s)	196, 683
AluI	AGCT	2 cut(s)	196, 683
Alw21I	GWGCWC	3 cut(s)	198, 440, 632
Alw44I	GTGCAC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	129, 142
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	7 cut(s)	7, 121, 153, 241, 454, 493, 662
ApaI	GGGCCC	1 cut(s)	11
ApaLI	GTGCAC	1 cut(s)	628
ApeKI	GCWGC	1 cut(s)	778
AseI	ATTAAT	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	6 cut(s)	7, 8, 14, 122, 298, 454
AsuC2I	CCSGG	2 cut(s)	6, 12
AsuHPI	GGTGA	3 cut(s)	55, 133, 686
AvaII	GGWCC	2 cut(s)	14, 298
BaeGI	GKGCMC	2 cut(s)	11, 632
BamHI	GGATCC	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	11, 198
BauI	CACGAG	1 cut(s)	698
Bbv12I	GWGCWC	3 cut(s)	198, 440, 632
BbvI	GCAGC	1 cut(s)	765
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	2 cut(s)	6, 12
BfaI	CTAG	1 cut(s)	707
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	3 cut(s)	169, 457, 779
BlsI	GCNGC	3 cut(s)	170, 458, 780
Bme1390I	CCNGG	3 cut(s)	6, 12, 268
Bme18I	GGWCC	2 cut(s)	14, 298
BmgT120I	GGNCC	6 cut(s)	7, 8, 14, 122, 298, 454
BmiI	GGNNCC	7 cut(s)	9, 10, 124, 136, 190, 299, 321
BmrFI	CCNGG	3 cut(s)	6, 12, 268
BmsI	GCATC	2 cut(s)	351, 466
BpmI	CTGGAG	1 cut(s)	259
BpuMI	CCSGG	2 cut(s)	6, 12
BsaAI	YACGTR	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	10, 33, 688
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 684, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 72, 131, 295, 671
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	10, 33, 688
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	5 cut(s)	11, 72, 131, 295, 671
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	11, 632
BseXI	GCAGC	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	7 cut(s)	9, 123, 155, 243, 456, 495, 664
BsiHKAI	GWGCWC	3 cut(s)	198, 440, 632
BsiSI	CCGG	4 cut(s)	5, 12, 317, 360
BslI	CCNNNNNNNGG	5 cut(s)	11, 72, 131, 295, 671
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	7 cut(s)	9, 123, 155, 243, 456, 495, 664
Bsp120I	GGGCCC	1 cut(s)	7
Bsp1286I	GDGCHC	4 cut(s)	11, 198, 440, 632
Bsp143I	GATC	3 cut(s)	96, 134, 385
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	3 cut(s)	17, 168, 457
BspANI	GGCC	7 cut(s)	9, 123, 155, 243, 456, 495, 664
BspFNI	CGCG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	7 cut(s)	9, 10, 124, 136, 190, 299, 321
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	2 cut(s)	129, 142
BsrFI	RCCGGY	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	10, 33, 688
BssMI	GATC	3 cut(s)	96, 134, 385
BssNAI	GTATAC	2 cut(s)	423, 643
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	698
BssT1I	CCWWGG	2 cut(s)	33, 688
Bst1107I	GTATAC	2 cut(s)	423, 643
Bst2BI	CACGAG	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	153, 198, 610, 666
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	3 cut(s)	99, 137, 388
BstMBI	GATC	3 cut(s)	96, 134, 385
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 174, 501, 618, 627
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	4, 10, 266
BstSLI	GKGCMC	2 cut(s)	11, 632
BstSNI	TACGTA	1 cut(s)	420
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BstZ17I	GTATAC	2 cut(s)	423, 643
BsuRI	GGCC	7 cut(s)	9, 123, 155, 243, 456, 495, 664
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	344, 438
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	4 cut(s)	153, 198, 610, 666
CaiI	CAGNNNCTG	1 cut(s)	479
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	6 cut(s)	7, 8, 14, 122, 298, 454
CpoI	CGGWCCG	1 cut(s)	14
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	28, 417, 616
CspI	CGGWCCG	1 cut(s)	14
CviAII	CATG	4 cut(s)	34, 426, 751, 767
CviQI	GTAC	3 cut(s)	28, 417, 616
DpnI	GATC	3 cut(s)	98, 136, 387
DpnII	GATC	3 cut(s)	96, 134, 385
EaeI	YGGCCR	1 cut(s)	662
Ecl136II	GAGCTC	1 cut(s)	196
Eco105I	TACGTA	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	33, 688
Eco24I	GRGCYC	2 cut(s)	11, 198
Eco47I	GGWCC	2 cut(s)	14, 298
Eco53kI	GAGCTC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	2 cut(s)	8, 298
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	33, 688
EcoT22I	ATGCAT	1 cut(s)	506
EcoT38I	GRGCYC	2 cut(s)	11, 198
ErhI	CCWWGG	2 cut(s)	33, 688
FaeI	CATG	4 cut(s)	37, 429, 754, 770
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FatI	CATG	4 cut(s)	33, 425, 750, 766
FblI	GTMKAC	2 cut(s)	422, 642
Fnu4HI	GCNGC	3 cut(s)	169, 457, 779
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	2 cut(s)	11, 198
Fsp4HI	GCNGC	3 cut(s)	169, 457, 779
FspBI	CTAG	1 cut(s)	707
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	169, 457, 779
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	7 cut(s)	9, 123, 155, 243, 456, 495, 664
HapII	CCGG	4 cut(s)	5, 12, 317, 360
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	461
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	37, 429, 754, 770
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HincII	GTYRAC	2 cut(s)	109, 562
HindII	GTYRAC	2 cut(s)	109, 562
HinfI	GANTC	3 cut(s)	279, 305, 581
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	4 cut(s)	5, 12, 317, 360
HphI	GGTGA	3 cut(s)	55, 133, 686
Hpy166II	GTNNAC	5 cut(s)	109, 423, 562, 630, 643
Hpy188I	TCNGA	3 cut(s)	54, 134, 193
Hpy188III	TCNNGA	3 cut(s)	276, 473, 767
Hpy8I	GTNNAC	5 cut(s)	109, 423, 562, 630, 643
Hpy99I	CGWCG	3 cut(s)	167, 494, 663
HpyAV	CCTTC	4 cut(s)	124, 148, 229, 319
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	228, 419
HpyCH4V	TGCA	5 cut(s)	337, 342, 504, 630, 754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 174, 501, 618, 627
HpySE526I	ACGT	2 cut(s)	228, 419
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	37, 429, 754, 770
HspAI	GCGC	1 cut(s)	459
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	3 cut(s)	96, 134, 385
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	2 cut(s)	351, 466
MaeI	CTAG	1 cut(s)	707
MaeII	ACGT	2 cut(s)	228, 419
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	3 cut(s)	98, 136, 387
MboI	GATC	3 cut(s)	96, 134, 385
MboII	GAAGA	3 cut(s)	109, 274, 689
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	4 cut(s)	11, 198, 440, 632
MluCI	AATT	1 cut(s)	513
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	506
MseI	TTAA	5 cut(s)	468, 512, 543, 561, 651
MspI	CCGG	4 cut(s)	5, 12, 317, 360
MspR9I	CCNGG	3 cut(s)	6, 12, 268
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	5 cut(s)	78, 174, 501, 618, 627
NciI	CCSGG	2 cut(s)	6, 12
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	96, 134, 385
NlaIII	CATG	4 cut(s)	37, 429, 754, 770
NlaIV	GGNNCC	7 cut(s)	9, 10, 124, 136, 190, 299, 321
NmuCI	GTSAC	1 cut(s)	369
NsiI	ATGCAT	1 cut(s)	506
PagI	TCATGA	1 cut(s)	766
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	279, 581
PflMI	CCANNNNNTGG	1 cut(s)	671
PkrI	GCNGC	3 cut(s)	170, 458, 780
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	420
PpuMI	RGGWCCY	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	7 cut(s)	9, 10, 124, 136, 190, 299, 321
PspOMI	GGGCCC	1 cut(s)	7
PspPI	GGNCC	6 cut(s)	7, 8, 14, 122, 298, 454
PspPPI	RGGWCCY	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	3 cut(s)	29, 418, 617
RsaNI	GTAC	3 cut(s)	28, 417, 616
Rsr2I	CGGWCCG	1 cut(s)	14
RsrII	CGGWCCG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	5 cut(s)	468, 512, 543, 561, 651
SatI	GCNGC	3 cut(s)	169, 457, 779
Sau3AI	GATC	3 cut(s)	96, 134, 385
Sau96I	GGNCC	6 cut(s)	7, 8, 14, 122, 298, 454
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	3 cut(s)	6, 12, 268
SduI	GDGCHC	4 cut(s)	11, 198, 440, 632
SetI	ASST	9 cut(s)	24, 77, 198, 231, 422, 466, 685, 690, 766
SfaNI	GCATC	2 cut(s)	351, 466
SinI	GGWCC	2 cut(s)	14, 298
SnaBI	TACGTA	1 cut(s)	420
Sse9I	AATT	1 cut(s)	513
SsiI	CCGC	3 cut(s)	17, 168, 457
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	1 cut(s)	707
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	4, 10, 266
StyI	CCWWGG	2 cut(s)	33, 688
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	2 cut(s)	231, 422
TaqI	TCGA	4 cut(s)	180, 303, 384, 396
TasI	AATT	1 cut(s)	513
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	2 cut(s)	171, 459
TfiI	GAWTC	2 cut(s)	279, 581
Tru1I	TTAA	5 cut(s)	468, 512, 543, 561, 651
Tru9I	TTAA	5 cut(s)	468, 512, 543, 561, 651
TscAI	CASTG	2 cut(s)	344, 445
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	1 cut(s)	778
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	2 cut(s)	561, 594
TspRI	CASTG	2 cut(s)	344, 445
Van91I	CCANNNNNTGG	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	628
VpaK11BI	GGWCC	2 cut(s)	14, 298
VspI	ATTAAT	1 cut(s)	468
XmiI	GTMKAC	2 cut(s)	422, 642
XspI	CTAG	1 cut(s)	707
Zsp2I	ATGCAT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.