Rw7G022660

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009043
Physical Location & Seq
Forward (+)
26820216 .. 26824018
3803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022660.1

Sequence Viewer

Length: 393 bp
ATGGTATCTGAGTTAATAAATGCGAATCCAGTCATCTATGAAAAGAAAGAAGATATTAAAGACCCGGAACACCCTTACTCTTTGGAAGAGCTCAAAGTAATTTCAGAAGATGCAATTGAAGTAGATGATGGTCGTGGTCATGTTAGGGTCACATTTACTCCTACTGTTGAACATTGCAGTATGGCAACAGTTATTGGTCTTTGCATACGTGTTAAACTGTTAAGGAGCCTGCCTTCTCGTTTCAAGGTGGACATTAGGGTGGCACCTGGATCTCATGCAACTGAAGCTGCAGTTAATAAGCAACTGAATGATAAAGAGCGGGTAGCTGCGGCATTGGAAAACCCAAATGTTGTGGAAATGGTTGATGAATGCCTTACTCCTTCATATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

130

Amino Acids

14.47

Weight (kDa)

4.98

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeS_assembly_P PF01883 18 - 85 1.8e-07 Iron-sulfur cluster assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccBSI CCGCTC 1 cut(s) 319
AciI CCGC 2 cut(s) 319, 329
AclWI GGATC 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 303
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 3 cut(s) 119, 170, 244
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 3 cut(s) 91, 287, 326
AluI AGCT 3 cut(s) 91, 287, 326
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 287, 326
AsuC2I CCSGG 1 cut(s) 65
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 274, 313
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 3 cut(s) 288, 327, 330
BlsI GCNGC 3 cut(s) 289, 328, 331
Bme1390I CCNGG 2 cut(s) 65, 267
BmiI GGNNCC 2 cut(s) 227, 264
BmrFI CCNGG 2 cut(s) 65, 267
BmsI GCATC 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 274, 313
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 65
BsmI GAATGC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 2 cut(s) 319, 329
BspLI GGNNCC 2 cut(s) 227, 264
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 29
BssMI GATC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 166, 190, 219
Bst6I CTCTTC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 9
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 63, 265
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 274, 313
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 2 cut(s) 140, 275
CviJI RGCY 4 cut(s) 91, 228, 287, 326
CviKI_1 RGCY 4 cut(s) 91, 228, 287, 326
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 2 cut(s) 143, 278
FaiI YATR 7 cut(s) 39, 141, 182, 206, 276, 385, 387
FatI CATG 2 cut(s) 139, 274
FauI CCCGC 1 cut(s) 312
FauNDI CATATG 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 288, 327, 330
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 288, 327, 330
GluI GCNGC 3 cut(s) 288, 327, 330
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 143, 278
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 10, 106
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 243, 390
HpyCH4III ACNGT 3 cut(s) 166, 190, 219
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 5 cut(s) 113, 177, 204, 278, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 2 cut(s) 143, 278
Kzo9I GATC 1 cut(s) 269
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 5 cut(s) 42, 78, 242, 252, 279
Lsp1109I GCAGC 2 cut(s) 274, 313
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 271
MbiI CCGCTC 1 cut(s) 319
MboI GATC 1 cut(s) 269
MboII GAAGA 3 cut(s) 62, 98, 119
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 99, 114
MseI TTAA 5 cut(s) 14, 57, 213, 221, 294
MslI CAYNNNNRTG 1 cut(s) 257
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 65, 267
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 65
NdeI CATATG 1 cut(s) 385
NdeII GATC 1 cut(s) 269
NlaIII CATG 2 cut(s) 143, 278
NlaIV GGNNCC 2 cut(s) 227, 264
NmuCI GTSAC 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 81
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 3 cut(s) 289, 328, 331
Ppu21I YACGTR 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 227, 264
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 5 cut(s) 14, 57, 213, 221, 294
SatI GCNGC 3 cut(s) 288, 327, 330
Sau3AI GATC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 65, 267
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 93, 211, 249, 268, 289, 328
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 2 cut(s) 99, 114
SsiI CCGC 2 cut(s) 319, 329
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 63, 265
TaaI ACNGT 3 cut(s) 166, 190, 219
TaiI ACGT 1 cut(s) 211
TasI AATT 2 cut(s) 99, 114
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 5 cut(s) 14, 57, 213, 221, 294
Tru9I TTAA 5 cut(s) 14, 57, 213, 221, 294
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 287, 326
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 54, 372, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.