Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009043

Physical Location & Seq

Genomic Coordinates Forward (+)

13146692 .. 13150900

Gene Structure 4209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G151700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTGTCTGAGCTAATAAATGCTAATCCGGTCATCTACGAAAAGAAAGAGCGTCGGGTTCGTAGTGTCCCAACTGCTGCTGCAGATGAATATGCTGTTGAACCCATTGACCAACAAGAAATTTTTGATCACATTAGAGATATAAAAGACCCAGAACACCCTTACTCGTTGGAGGAGCTCAAAGTAATTACAGAAGATGCAATTGAAGTAGACGATAGTCGTGGTTACATCAGGGTCACATTTACTCCTACTGTCGAACATTGTAGTATGGCAACGGTTATTGGTCTTTGCTTACGTGTTAAACTCTTAAGGAGCCTGCCTTCTCGTTACAAGGTGGATATTAGGGTGGCACCAGGATCTCATGCAACTGAAGCTGCCGTTAATAAGCAATTGAATGATAAGGAACGGGTGGCAGCGGCACTGGAAAACACAAACCTTTTGGATATGGTTGATGAATGCATTTCTCCTACATATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

4.9

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68310 AT1G68310
fragaria_vesca	FvH4_5g23251
malus_domestica	MD03G1162900.v1.1 MD11G1178900.v1.1
prunus_persica	Prupe.1G100200_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1
pyrus_communis	pycom03g11550 pycom11g15440
rosa_chinensis	RchiOBHm_Chr7g0212191 RchiOBHm_Chr7g0212201
rosa_laevigata	RLG00000002916
rosa_multiflora	Rmu_sc0002283.1_g000054 Rmu_sc0007204.1_g000023
rosa_roxburghii	Rroxscaffold_3G00247040
rosa_rugosa	Rorug07G0132000
rosa_samantha	Rh7BG259200
rosa_wichuraiana	Rw7G022610 Rw7G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	390
AflII	CTTAAG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	101, 206, 394
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	3 cut(s)	13, 178, 374
AluI	AGCT	3 cut(s)	13, 178, 374
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	364
ApeKI	GCWGC	4 cut(s)	77, 80, 374, 413
ApoI	RAATTY	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	64, 67, 361, 425
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	354
BclI	TGATCA	1 cut(s)	127
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	307
BisI	GCNGC	5 cut(s)	78, 81, 375, 414, 417
BlsI	GCNGC	5 cut(s)	79, 82, 376, 415, 418
Bme1390I	CCNGG	1 cut(s)	354
BmiI	GGNNCC	2 cut(s)	314, 351
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	187
BoxI	GACNNNNGTC	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	4 cut(s)	64, 67, 361, 425
BshNI	GGYRCC	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	127, 356
BspACI	CCGC	1 cut(s)	416
BspLI	GGNNCC	2 cut(s)	314, 351
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	426
BssMI	GATC	2 cut(s)	127, 356
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	253, 277
BstAFI	CTTAAG	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	130, 359
BstMBI	GATC	2 cut(s)	127, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	354
BstPAI	GACNNNNGTC	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	64, 67, 361, 425
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	317
CseI	GACGC	1 cut(s)	41
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	4 cut(s)	13, 178, 315, 374
CviKI_1	RGCY	4 cut(s)	13, 178, 315, 374
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	129, 358
DpnII	GATC	2 cut(s)	127, 356
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	1 cut(s)	365
FaiI	YATR	7 cut(s)	93, 143, 269, 363, 446, 472, 474
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	361
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	78, 81, 375, 414, 417
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	5 cut(s)	78, 81, 375, 414, 417
GluI	GCNGC	5 cut(s)	78, 81, 375, 414, 417
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	365
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	330
HpyCH4III	ACNGT	2 cut(s)	253, 277
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	4 cut(s)	83, 200, 365, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 356
LmnI	GCTCC	2 cut(s)	175, 312
LpnPI	CCDG	7 cut(s)	42, 165, 217, 329, 339, 366, 407
Lsp1109I	GCAGC	4 cut(s)	64, 67, 361, 425
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	3 cut(s)	224, 235, 326
MalI	GATC	2 cut(s)	129, 358
MboI	GATC	2 cut(s)	127, 356
MboII	GAAGA	1 cut(s)	206
MfeI	CAATTG	2 cut(s)	201, 389
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	4 cut(s)	120, 186, 201, 389
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	1 cut(s)	166
Mph1103I	ATGCAT	1 cut(s)	461
MseI	TTAA	3 cut(s)	300, 308, 381
MslI	CAYNNNNRTG	1 cut(s)	475
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	354
MunI	CAATTG	2 cut(s)	201, 389
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	2 cut(s)	127, 356
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	2 cut(s)	314, 351
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	461
PctI	GAATGC	1 cut(s)	461
PkrI	GCNGC	5 cut(s)	79, 82, 376, 415, 418
Ppu21I	YACGTR	1 cut(s)	296
PshAI	GACNNNNGTC	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	314, 351
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	300, 308, 381
SatI	GCNGC	5 cut(s)	78, 81, 375, 414, 417
Sau3AI	GATC	2 cut(s)	127, 356
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	15, 180, 298, 336, 376, 438
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	4 cut(s)	120, 186, 201, 389
SsiI	CCGC	1 cut(s)	416
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	253, 277
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	255
TasI	AATT	4 cut(s)	120, 186, 201, 389
TauI	GCSGC	1 cut(s)	419
Tru1I	TTAA	3 cut(s)	300, 308, 381
Tru9I	TTAA	3 cut(s)	300, 308, 381
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	4 cut(s)	77, 80, 374, 413
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	102, 468
TspRI	CASTG	1 cut(s)	426
Vha464I	CTTAAG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.