Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009043

Physical Location & Seq

Genomic Coordinates Forward (+)

25599465 .. 25601467

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTATCTGGGTTGATTAATGAGAACCCTATCATTTACCCAAAGAAAGAGAGGCGTCTTCGTACTGATACAAGCATTACTGATGAGCTTACACCAGAACCAATTGATCAACTTGAGATTTTTGATATCCTTTCTTCATCAAATATCAAAGATCCAGAGCATCCTAATACTCTGGAAGATCTCAGAGTAGTTACAGAAGACTCAGTTGAAGTGGATGATGAGAACAGTTATGTTAGGGTTACGTTCACTCCAACTGTCGAACATTGTAGCATGGCAACCGTTATCGGTCTTTGTGTCCGTGTGAAACTTCTACGAAGCCTTCCTTCTCGATACAAGATTGATATAAGGGTAGCACCTGGTTCTCATGCAACAGAAGATGCATTGAATAAACAACTAAACGATAAAGAACGTGTGGCGGCTGCACTAGAGAATCCAAACCTCGTGGAGATGGTTGATGAATGCCTGCCATCAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005048 GO:0005488 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006790 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009798 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010209 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0032501 GO:0032502 GO:0033218 GO:0034641 GO:0042127 GO:0042277 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050794 GO:0051186 GO:0051726 GO:0065001 GO:0065007 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1990067 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

159

Amino Acids

17.92

Weight (kDa)

4.59

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FeS_assembly_P	PF01883	47 - 109	5.6e-06	Iron-sulfur cluster assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68310 AT1G68310
fragaria_vesca	FvH4_5g23251
malus_domestica	MD03G1162900.v1.1 MD11G1178900.v1.1
prunus_persica	Prupe.1G100200_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1
pyrus_communis	pycom03g11550 pycom11g15440
rosa_chinensis	RchiOBHm_Chr7g0212191 RchiOBHm_Chr7g0212201
rosa_laevigata	RLG00000002916
rosa_multiflora	Rmu_sc0002283.1_g000054 Rmu_sc0007204.1_g000023
rosa_roxburghii	Rroxscaffold_3G00247040
rosa_rugosa	Rorug07G0132000
rosa_samantha	Rh7BG259200
rosa_wichuraiana	Rw7G022610 Rw7G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	55
AfaI	GTAC	1 cut(s)	64
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	209, 385
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AlwI	GGATC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	419
AseI	ATTAAT	1 cut(s)	18
BauI	CACGAG	1 cut(s)	440
BbsI	GAAGAC	2 cut(s)	50, 204
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	442, 475
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	1 cut(s)	106
BfaI	CTAG	1 cut(s)	425
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	2 cut(s)	417, 420
BlsI	GCNGC	2 cut(s)	418, 421
Bme1390I	CCNGG	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	2 cut(s)	169, 367
BpiI	GAAGAC	2 cut(s)	50, 204
BpuEI	CTTGAG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
BseBI	CCWGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	160, 220
BseMII	CTCAG	2 cut(s)	196, 216
BseXI	GCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	106, 151, 178
BspACI	CCGC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	195, 215
BspPI	GGATC	1 cut(s)	146
BssMI	GATC	3 cut(s)	106, 151, 178
BssNI	GRCGYC	1 cut(s)	55
BssSI	CACGAG	1 cut(s)	440
Bst2BI	CACGAG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	227, 256, 280
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	182, 202
BstF5I	GGATG	2 cut(s)	160, 220
BstKTI	GATC	3 cut(s)	109, 154, 181
BstMBI	GATC	3 cut(s)	106, 151, 178
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	2 cut(s)	50, 204
BstX2I	RGATCY	2 cut(s)	151, 178
BstYI	RGATCY	2 cut(s)	151, 178
BtsCI	GGATG	2 cut(s)	160, 220
Cac8I	GCNNGC	1 cut(s)	464
CseI	GACGC	1 cut(s)	44
CsiI	ACCWGGT	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	2 cut(s)	271, 365
CviJI	RGCY	3 cut(s)	88, 318, 419
CviKI_1	RGCY	3 cut(s)	88, 318, 419
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	182, 202
DpnI	GATC	3 cut(s)	108, 153, 180
DpnII	GATC	3 cut(s)	106, 151, 178
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	382
FaeI	CATG	2 cut(s)	274, 368
FaiI	YATR	4 cut(s)	231, 272, 344, 366
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	2 cut(s)	270, 364
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	417, 420
FokI	GGATG	2 cut(s)	147, 227
Fsp4HI	GCNGC	2 cut(s)	417, 420
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	417, 420
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	274, 368
HinfI	GANTC	2 cut(s)	200, 430
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	185, 472
Hpy188III	TCNNGA	3 cut(s)	155, 173, 327
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	329, 333
HpyCH4III	ACNGT	3 cut(s)	227, 256, 280
HpyCH4IV	ACGT	2 cut(s)	242, 409
HpyCH4V	TGCA	3 cut(s)	368, 380, 422
HpyF3I	CTNAG	2 cut(s)	182, 202
HpySE526I	ACGT	2 cut(s)	242, 409
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	274, 368
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	106, 151, 178
LpnPI	CCDG	6 cut(s)	108, 158, 168, 342, 369, 476
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	2 cut(s)	169, 367
MabI	ACCWGGT	1 cut(s)	355
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	2 cut(s)	242, 409
MaeIII	GTNAC	2 cut(s)	190, 238
MalI	GATC	3 cut(s)	108, 153, 180
MboI	GATC	3 cut(s)	106, 151, 178
MboII	GAAGA	5 cut(s)	50, 126, 188, 209, 386
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	2 cut(s)	151, 178
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	2 cut(s)	45, 449
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	357
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	357
NdeII	GATC	3 cut(s)	106, 151, 178
NlaIII	CATG	2 cut(s)	274, 368
NsiI	ATGCAT	1 cut(s)	382
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	418, 421
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	151, 178
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	417, 420
Sau3AI	GATC	3 cut(s)	106, 151, 178
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	5 cut(s)	90, 245, 358, 412, 441
SexAI	ACCWGGT	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	169, 367
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	227, 256, 280
TaiI	ACGT	2 cut(s)	245, 412
TaqI	TCGA	2 cut(s)	258, 328
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	102
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	2 cut(s)	126, 471
TspGWI	ACGGA	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	18
XspI	CTAG	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.