RchiOBHm_Chr7g0212201

MIP18 family protein At1g68310-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
29503946 .. 29506771
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18987

Sequence Viewer

Length: 264 bp
ATGATGGTCGTGGTCATGGTCACATTTACTCCTACTGTTGAACATTGCAGTATGGCAACAGTTATTGGTCTTTGCATACGTGTTAAACTCTTAAGGAGCCTGCCTTCTCGTTTCAAGGTGGACATTAGGGTGGCACCTGGATCTCATGCAACTGAAGCTGCAGTTAATAAGCAACTGAATGATAAAGAGCGGGTAGCAGCGGCATTGGAAAACCCAAATGTTGTGGAAATGGTTGATGAATGCCTTACTCCTTCATATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.56

Weight (kDa)

6.07

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 2 cut(s) 190, 200
AclWI GGATC 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 174
AflII CTTAAG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 41, 115
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AlwI GGATC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 158, 197
BanI GGYRCC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 145, 209
BciT130I CCWGG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 91
BisI GCNGC 3 cut(s) 159, 198, 201
BlsI GCNGC 3 cut(s) 160, 199, 202
Bme1390I CCNGG 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 98, 135
BmrFI CCNGG 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 145, 209
BshNI GGYRCC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 2 cut(s) 190, 200
BspLI GGNNCC 2 cut(s) 98, 135
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 133
BspTI CTTAAG 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 43
BssMI GATC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 37, 61
BstAFI CTTAAG 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 145, 209
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 2 cut(s) 16, 146
CviJI RGCY 2 cut(s) 99, 158
CviKI_1 RGCY 2 cut(s) 99, 158
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 19, 149
FaiI YATR 6 cut(s) 17, 53, 77, 147, 256, 258
FatI CATG 2 cut(s) 15, 145
FauI CCCGC 1 cut(s) 183
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 3 cut(s) 159, 198, 201
Fsp4HI GCNGC 3 cut(s) 159, 198, 201
GluI GCNGC 3 cut(s) 159, 198, 201
Hin1II CATG 2 cut(s) 19, 149
Hpy166II GTNNAC 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 114, 261
HpyCH4III ACNGT 2 cut(s) 37, 61
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 48, 75, 149, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 19, 149
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 3 cut(s) 113, 123, 150
Lsp1109I GCAGC 2 cut(s) 145, 209
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 142
MbiI CCGCTC 1 cut(s) 190
MboI GATC 1 cut(s) 140
MflI RGATCY 1 cut(s) 140
MseI TTAA 3 cut(s) 84, 92, 165
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 140
NlaIII CATG 2 cut(s) 19, 149
NlaIV GGNNCC 2 cut(s) 98, 135
NmuCI GTSAC 1 cut(s) 19
PctI GAATGC 1 cut(s) 245
PkrI GCNGC 3 cut(s) 160, 199, 202
Ppu21I YACGTR 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 98, 135
PstI CTGCAG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 3 cut(s) 84, 92, 165
SatI GCNGC 3 cut(s) 159, 198, 201
Sau3AI GATC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 138
SetI ASST 4 cut(s) 82, 120, 139, 160
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SsiI CCGC 2 cut(s) 190, 200
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 37, 61
TaiI ACGT 1 cut(s) 82
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 3 cut(s) 84, 92, 165
Tru9I TTAA 3 cut(s) 84, 92, 165
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 158, 197
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 243, 252
Vha464I CTTAAG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.