Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009043

Physical Location & Seq

Genomic Coordinates Forward (+)

19710679 .. 19713349

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1162900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGTCCGAGTTAATAAATGCGAATCCGGTCATCTACGAAAAGAAAGAGAGACGGGTTCGTAGTGTTCCAAGTGCTGCTGCAGATGAATATGCTGTTGAACCCATTGACCAACAAGAGATTTTCGATATCCTTTCAGACCCGGAACACCCTTATTCGTTGGAGGAGCTCAAAGTGATAACAGAAGATGCAATTGAAGTTGATGATGGTCGTGGCTACGTCAGGGTCACATTTACTCCTACGGTGGAACATTGTAGTATGGCAACGGTTATTGGTCTTTGCTTACGTGTTAAACTCTTAAGGAGCCTACCTTCTCGTTACAAGGTGGATATTAGGGTGGCACCCGGATCTCATGCAACCGAAGCTGCAGTTAATAAGCAACTGAATGATAAGGAACGGGTGGCTGCGGCGTTGGAGAACCCAGGCCTCGTTGATATGGTTGATGAATGCCTTTCTCCTTCGTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

4.74

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68310 AT1G68310
fragaria_vesca	FvH4_5g23251
malus_domestica	MD03G1162900.v1.1 MD11G1178900.v1.1
prunus_persica	Prupe.1G100200_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1
pyrus_communis	pycom03g11550 pycom11g15440
rosa_chinensis	RchiOBHm_Chr7g0212191 RchiOBHm_Chr7g0212201
rosa_laevigata	RLG00000002916
rosa_multiflora	Rmu_sc0002283.1_g000054 Rmu_sc0007204.1_g000023
rosa_roxburghii	Rroxscaffold_3G00247040
rosa_rugosa	Rorug07G0132000
rosa_samantha	Rh7BG259200
rosa_wichuraiana	Rw7G022610 Rw7G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	1 cut(s)	355
AflII	CTTAAG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	101, 197
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	2 cut(s)	169, 365
AluI	AGCT	2 cut(s)	169, 365
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	355
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	4 cut(s)	77, 80, 365, 404
AsuC2I	CCSGG	2 cut(s)	143, 345
BanI	GGYRCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	4 cut(s)	64, 67, 352, 391
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	423
BcnI	CCSGG	2 cut(s)	143, 345
BcoDI	GTCTC	1 cut(s)	46
BfmI	CTRYAG	2 cut(s)	81, 366
BfrI	CTTAAG	1 cut(s)	298
BisI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
BlsI	GCNGC	5 cut(s)	79, 82, 367, 406, 409
Bme1390I	CCNGG	3 cut(s)	143, 345, 423
BmiI	GGNNCC	2 cut(s)	305, 342
BmrFI	CCNGG	3 cut(s)	143, 345, 423
BmsI	GCATC	1 cut(s)	178
BpuMI	CCSGG	2 cut(s)	143, 345
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	4 cut(s)	64, 67, 352, 391
BshFI	GGCC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	29, 143, 345
BsmAI	GTCTC	1 cut(s)	46
BsmBI	CGTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	347
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	305, 342
BspMAI	CTGCAG	2 cut(s)	85, 370
BspPI	GGATC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	340
BspTI	CTTAAG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	244, 268
BstAFI	CTTAAG	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	287
BstKTI	GATC	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	3 cut(s)	141, 343, 421
BstSFI	CTRYAG	2 cut(s)	81, 366
BstV1I	GCAGC	4 cut(s)	64, 67, 352, 391
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	426
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	6 cut(s)	169, 216, 306, 365, 404, 426
CviKI_1	RGCY	6 cut(s)	169, 216, 306, 365, 404, 426
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	1 cut(s)	356
FaiI	YATR	5 cut(s)	93, 260, 354, 437, 465
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
GluI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	3 cut(s)	29, 143, 345
Hin1II	CATG	1 cut(s)	356
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	3 cut(s)	29, 143, 345
Hpy188I	TCNGA	2 cut(s)	10, 139
HpyAV	CCTTC	2 cut(s)	321, 468
HpyCH4III	ACNGT	2 cut(s)	244, 268
HpyCH4IV	ACGT	2 cut(s)	219, 286
HpyCH4V	TGCA	4 cut(s)	83, 191, 356, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpySE526I	ACGT	2 cut(s)	219, 286
Hsp92II	CATG	1 cut(s)	356
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	2 cut(s)	166, 303
LpnPI	CCDG	6 cut(s)	42, 156, 208, 358, 408, 435
Lsp1109I	GCAGC	4 cut(s)	64, 67, 352, 391
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	2 cut(s)	219, 286
MaeIII	GTNAC	2 cut(s)	226, 317
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	192
MmeI	TCCRAC	2 cut(s)	141, 393
MnlI	CCTC	2 cut(s)	157, 437
MseI	TTAA	4 cut(s)	14, 291, 299, 372
MspCI	CTTAAG	1 cut(s)	298
MspI	CCGG	3 cut(s)	29, 143, 345
MspR9I	CCNGG	3 cut(s)	143, 345, 423
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	362
NciI	CCSGG	2 cut(s)	143, 345
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	305, 342
NmuCI	GTSAC	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	426
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	5 cut(s)	79, 82, 367, 406, 409
Ppu21I	YACGTR	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	305, 342
PstI	CTGCAG	2 cut(s)	85, 370
PsuI	RGATCY	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	14, 291, 299, 372
SatI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
Sau3AI	GATC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	143, 345, 423
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	171, 222, 289, 313, 327, 367
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	2 cut(s)	81, 366
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	1 cut(s)	192
SseBI	AGGCCT	1 cut(s)	426
SsiI	CCGC	1 cut(s)	407
SstI	GAGCTC	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	426
StyD4I	CCNGG	3 cut(s)	141, 343, 421
TaaI	ACNGT	2 cut(s)	244, 268
TaiI	ACGT	2 cut(s)	222, 289
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	192
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	4 cut(s)	14, 291, 299, 372
Tru9I	TTAA	4 cut(s)	14, 291, 299, 372
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	4 cut(s)	77, 80, 365, 404
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	102, 459
Vha464I	CTTAAG	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.