Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009043

Physical Location & Seq

Genomic Coordinates Forward (+)

11363338 .. 11365417

Gene Structure 2080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTGTACCTTAATCTGATCGAAAGTAGTTTTATGTTTTTCCTTGTATGCTGGGAAGAATTTAGTATTCCTTTACAATTCTTAAACCATATTAGAGATATAAAGGACCCGGAACACCCTTATTCGTTGGAGGAGCTCAAAGTGATAACAGAAGATGCAATTGAAGTTGATGATGGTCGTGGCTACGTCAGGGTCACATTTACTCCTACGGTGGAACATTGTAGTATGGCAACGGTTATTGGTCTTTGCTTACGTGTTAAACTCTTAAGGAGCCTACCTTCTCGTTACAAGGTGGATATTAGGGTGGCACCCGGATCTCATGCAACCGAAGCTGCAGTTAATAAGCAACTGAATGATAAGGAACGGGTGGCTGCGGCGTTGGAGAACCCAGGCCTCGTTGATATGGTTGATGAATGCCTTTCTCCTTCGTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

146

Amino Acids

16.47

Weight (kDa)

4.89

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68310 AT1G68310
fragaria_vesca	FvH4_5g23251
malus_domestica	MD03G1162900.v1.1 MD11G1178900.v1.1
prunus_persica	Prupe.1G100200_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1
pyrus_communis	pycom03g11550 pycom11g15440
rosa_chinensis	RchiOBHm_Chr7g0212191 RchiOBHm_Chr7g0212201
rosa_laevigata	RLG00000002916
rosa_multiflora	Rmu_sc0002283.1_g000054 Rmu_sc0007204.1_g000023
rosa_roxburghii	Rroxscaffold_3G00247040
rosa_rugosa	Rorug07G0132000
rosa_samantha	Rh7BG259200
rosa_wichuraiana	Rw7G022610 Rw7G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	59
AfaI	GTAC	1 cut(s)	8
AflII	CTTAAG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	2 cut(s)	136, 332
AluI	AGCT	2 cut(s)	136, 332
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	332, 371
ApoI	RAATTY	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	2 cut(s)	110, 312
AvaII	GGWCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	319, 358
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	2 cut(s)	110, 312
BfmI	CTRYAG	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	265
BisI	GCNGC	3 cut(s)	333, 372, 375
BlsI	GCNGC	3 cut(s)	334, 373, 376
Bme1390I	CCNGG	3 cut(s)	110, 312, 390
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	108, 272, 309
BmrFI	CCNGG	3 cut(s)	110, 312, 390
BmsI	GCATC	1 cut(s)	145
BpuMI	CCSGG	2 cut(s)	110, 312
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	319, 358
BseYI	CCCAGC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	110, 312
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	18, 314
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	393
BspLI	GGNNCC	3 cut(s)	108, 272, 309
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	2 cut(s)	18, 314
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	211, 235
BstAFI	CTTAAG	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	254
BstKTI	GATC	2 cut(s)	21, 317
BstMBI	GATC	2 cut(s)	18, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	3 cut(s)	108, 310, 388
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	319, 358
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	6 cut(s)	136, 183, 273, 332, 371, 393
CviKI_1	RGCY	6 cut(s)	136, 183, 273, 332, 371, 393
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	2 cut(s)	20, 316
DpnII	GATC	2 cut(s)	18, 314
Ecl136II	GAGCTC	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	1 cut(s)	323
FaiI	YATR	8 cut(s)	35, 49, 90, 101, 227, 321, 404, 432
FatI	CATG	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	333, 372, 375
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	333, 372, 375
GluI	GCNGC	3 cut(s)	333, 372, 375
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	2 cut(s)	110, 312
Hin1II	CATG	1 cut(s)	323
HpaII	CCGG	2 cut(s)	110, 312
Hpy188I	TCNGA	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	288, 435
HpyCH4III	ACNGT	2 cut(s)	211, 235
HpyCH4IV	ACGT	2 cut(s)	186, 253
HpyCH4V	TGCA	3 cut(s)	158, 323, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpySE526I	ACGT	2 cut(s)	186, 253
Hsp92II	CATG	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	18, 314
LmnI	GCTCC	2 cut(s)	133, 270
LpnPI	CCDG	6 cut(s)	37, 123, 175, 325, 375, 402
Lsp1109I	GCAGC	2 cut(s)	319, 358
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	2 cut(s)	186, 253
MaeIII	GTNAC	2 cut(s)	193, 284
MalI	GATC	2 cut(s)	20, 316
MboI	GATC	2 cut(s)	18, 314
MboII	GAAGA	2 cut(s)	68, 164
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	59, 77, 159
MmeI	TCCRAC	2 cut(s)	108, 360
MnlI	CCTC	2 cut(s)	124, 404
MseI	TTAA	5 cut(s)	12, 83, 258, 266, 339
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	2 cut(s)	110, 312
MspR9I	CCNGG	3 cut(s)	110, 312, 390
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	2 cut(s)	110, 312
NdeII	GATC	2 cut(s)	18, 314
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	3 cut(s)	108, 272, 309
NmuCI	GTSAC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	393
PctI	GAATGC	1 cut(s)	419
PkrI	GCNGC	3 cut(s)	334, 373, 376
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	108, 272, 309
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	5 cut(s)	12, 83, 258, 266, 339
SatI	GCNGC	3 cut(s)	333, 372, 375
Sau3AI	GATC	2 cut(s)	18, 314
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	110, 312, 390
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	7 cut(s)	12, 138, 189, 256, 280, 294, 334
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	3 cut(s)	59, 77, 159
SseBI	AGGCCT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	3 cut(s)	108, 310, 388
TaaI	ACNGT	2 cut(s)	211, 235
TaiI	ACGT	2 cut(s)	189, 256
TaqI	TCGA	1 cut(s)	21
TasI	AATT	3 cut(s)	59, 77, 159
TauI	GCSGC	1 cut(s)	377
Tru1I	TTAA	5 cut(s)	12, 83, 258, 266, 339
Tru9I	TTAA	5 cut(s)	12, 83, 258, 266, 339
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	332, 371
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	426
Vha464I	CTTAAG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.