Rh7BG259200

MIP18 family protein At1g68310-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009043
Physical Location & Seq
Forward (+)
23591290 .. 23599434
8145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG259200.1

Sequence Viewer

Length: 435 bp
ATGCTGAGGGACTGTGGAAAAATGGTATCCGAGTTAATAAATGCGAATCCAGTCATCTATGAAAAGAAAGAGCGGCGGGTTCGTAGTGTTCCAAATATTAAAGACCCGGAACACCCTTACTCTTTGGAAGAGCTCAAAGTAATTTCAGAAGATGCAATTGAAGTAGATGATGGTCGTGGTCATGTTAGGGTCACATTTACTCCTACTGTTGAACATTGCAGTATGGCAACAGTTATTGGTCTTTGCATACGTGTTAAACTCTTGAGGAGCCTGCCTTCTCGTTTCAAGGTGGACATTAGGGTGGCACCTGGATCTCATGCAACTGAAGCTGCAGTTAATAAGCAACTGAATGATAAAGAGCGGGTAGCAGCGGCATTGGAAAACCCAAATGTTGTGGAAATGGTTGATGAATGCCTTACTCCTTCATATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FeS_assembly_P

Protein Analysis

144

Amino Acids

16.12

Weight (kDa)

5.84

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeS_assembly_P PF01883 32 - 99 2.7e-07 Iron-sulfur cluster assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AccBSI CCGCTC 2 cut(s) 73, 361
AciI CCGC 4 cut(s) 73, 76, 361, 371
AclWI GGATC 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 345
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 3 cut(s) 161, 212, 286
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 2 cut(s) 133, 329
AluI AGCT 2 cut(s) 133, 329
Alw21I GWGCWC 1 cut(s) 135
AlwI GGATC 1 cut(s) 319
ApeKI GCWGC 2 cut(s) 329, 368
AsuC2I CCSGG 1 cut(s) 107
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 316, 380
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 4 cut(s) 74, 330, 369, 372
BlsI GCNGC 4 cut(s) 75, 331, 370, 373
Bme1390I CCNGG 2 cut(s) 107, 309
BmiI GGNNCC 2 cut(s) 269, 306
BmrFI CCNGG 2 cut(s) 107, 309
BmsI GCATC 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 309
BseMI GCAATG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 316, 380
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 311
BspACI CCGC 4 cut(s) 73, 76, 361, 371
BspLI GGNNCC 2 cut(s) 269, 306
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 304
BsrBI CCGCTC 2 cut(s) 73, 361
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 50
BssMI GATC 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 14, 208, 232
Bst6I CTCTTC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 5
BstKTI GATC 1 cut(s) 314
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 105, 307
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 316, 380
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuI GTATCC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviAII CATG 2 cut(s) 182, 317
CviJI RGCY 3 cut(s) 133, 270, 329
CviKI_1 RGCY 3 cut(s) 133, 270, 329
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 2 cut(s) 185, 320
FaiI YATR 7 cut(s) 60, 183, 224, 248, 318, 427, 429
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 181, 316
FauI CCCGC 2 cut(s) 69, 354
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 4 cut(s) 74, 330, 369, 372
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 74, 330, 369, 372
GluI GCNGC 4 cut(s) 74, 330, 369, 372
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 185, 320
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 31, 148
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 285, 432
HpyCH4III ACNGT 3 cut(s) 14, 208, 232
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 5 cut(s) 155, 219, 246, 320, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 185, 320
Kzo9I GATC 1 cut(s) 311
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 5 cut(s) 63, 120, 284, 294, 321
Lsp1109I GCAGC 2 cut(s) 316, 380
LweI GCATC 1 cut(s) 142
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 313
MbiI CCGCTC 2 cut(s) 73, 361
MboI GATC 1 cut(s) 311
MboII GAAGA 2 cut(s) 140, 161
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 2 cut(s) 141, 156
MnlI CCTC 1 cut(s) 258
MseI TTAA 4 cut(s) 35, 99, 255, 336
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 107, 309
MunI CAATTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 416
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 427
NdeII GATC 1 cut(s) 311
NlaIII CATG 2 cut(s) 185, 320
NlaIV GGNNCC 2 cut(s) 269, 306
NmuCI GTSAC 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 123
PctI GAATGC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 4 cut(s) 75, 331, 370, 373
Ppu21I YACGTR 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 269, 306
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 4 cut(s) 35, 99, 255, 336
SatI GCNGC 4 cut(s) 74, 330, 369, 372
Sau3AI GATC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 107, 309
SduI GDGCHC 1 cut(s) 135
SetI ASST 5 cut(s) 135, 253, 291, 310, 331
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 2 cut(s) 141, 156
SsiI CCGC 4 cut(s) 73, 76, 361, 371
SspI AATATT 1 cut(s) 97
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 105, 307
TaaI ACNGT 3 cut(s) 14, 208, 232
TaiI ACGT 1 cut(s) 253
TasI AATT 2 cut(s) 141, 156
TauI GCSGC 2 cut(s) 76, 374
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 4 cut(s) 35, 99, 255, 336
Tru9I TTAA 4 cut(s) 35, 99, 255, 336
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 2 cut(s) 329, 368
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 75, 414, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.