Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009043

Physical Location & Seq

Genomic Coordinates Forward (+)

7994281 .. 7997174

Gene Structure 2894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G100200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTATCTGGGTTAATAAATGCAAATCCAGTCGTCTACGAAAAGAAAGAGCGTCGGGTTCGTAGTGTCCCAAGTGCTGCTGCAGATGAATACGCTGTTGAACCCATTGACCAACAAGAAATTTTTGATATCCTTTCTGAATTTAATATAAAAGACCCGGAACACCCTTACTCTTTGGAAGAGCTCAAAGTAATTACAGAAGATGCAATTGACGTAGATGATAGTCGTGGCTCTGTCAGAGTCACATTTACTCCTACTGTGGAACATTGTAGTATGGCAACAGTTATTGGTCTTTGCTTACGTGTTAAACTCTTGAGGAGCCTGCCTTCTCGTTACAAGGTGGATATTAGGGTGGCACCCGGATCTCATGCAACTGAAGCTGCTGTTAATAAGCAACTGAATGATAAAGAACGGGTGGCAGCGGCATTGGAAAACCCAGGCCTTCTGGATATGGTTGACGAATGCCTTTCTCCTTCATATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

162

Amino Acids

17.87

Weight (kDa)

4.8

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68310 AT1G68310
fragaria_vesca	FvH4_5g23251
malus_domestica	MD03G1162900.v1.1 MD11G1178900.v1.1
prunus_persica	Prupe.1G100200_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1
pyrus_communis	pycom03g11550 pycom11g15440
rosa_chinensis	RchiOBHm_Chr7g0212191 RchiOBHm_Chr7g0212201
rosa_laevigata	RLG00000002916
rosa_multiflora	Rmu_sc0002283.1_g000054 Rmu_sc0007204.1_g000023
rosa_roxburghii	Rroxscaffold_3G00247040
rosa_rugosa	Rorug07G0132000
rosa_samantha	Rh7BG259200
rosa_wichuraiana	Rw7G022610 Rw7G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	370
AcsI	RAATTY	2 cut(s)	120, 140
AcuI	CTGAAG	1 cut(s)	396
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	184, 380
AluI	AGCT	2 cut(s)	184, 380
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	370
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	4 cut(s)	77, 80, 380, 419
ApoI	RAATTY	2 cut(s)	120, 140
AsuC2I	CCSGG	2 cut(s)	158, 360
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	64, 67, 367, 431
BciT130I	CCWGG	1 cut(s)	438
BcnI	CCSGG	2 cut(s)	158, 360
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	5 cut(s)	78, 81, 381, 420, 423
BlsI	GCNGC	5 cut(s)	79, 82, 382, 421, 424
Bme1390I	CCNGG	3 cut(s)	158, 360, 438
BmiI	GGNNCC	2 cut(s)	320, 357
BmrFI	CCNGG	3 cut(s)	158, 360, 438
BmsI	GCATC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	2 cut(s)	158, 360
BsaAI	YACGTR	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	436
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	4 cut(s)	64, 67, 367, 431
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	158, 360
BslFI	GGGAC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	362
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	320, 357
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	370
BspQI	GCTCTTC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	259, 283
Bst6I	CTCTTC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	156, 358, 436
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	64, 67, 367, 431
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	323
CseI	GACGC	1 cut(s)	41
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	5 cut(s)	184, 231, 321, 380, 441
CviKI_1	RGCY	5 cut(s)	184, 231, 321, 380, 441
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	436
EcoRV	GATATC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	1 cut(s)	371
FaiI	YATR	6 cut(s)	149, 275, 369, 452, 478, 480
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	367
FauNDI	CATATG	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	5 cut(s)	78, 81, 381, 420, 423
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	5 cut(s)	78, 81, 381, 420, 423
GluI	GCNGC	5 cut(s)	78, 81, 381, 420, 423
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	2 cut(s)	158, 360
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	2 cut(s)	158, 360
Hpy166II	GTNNAC	2 cut(s)	37, 457
Hpy188I	TCNGA	2 cut(s)	139, 239
Hpy188III	TCNNGA	2 cut(s)	313, 446
Hpy8I	GTNNAC	2 cut(s)	37, 457
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	3 cut(s)	336, 452, 483
HpyCH4III	ACNGT	2 cut(s)	259, 283
HpyCH4IV	ACGT	2 cut(s)	213, 301
HpyCH4V	TGCA	4 cut(s)	23, 83, 206, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpySE526I	ACGT	2 cut(s)	213, 301
Hsp92II	CATG	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	362
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	42, 171, 335, 373, 423, 431, 450
Lsp1109I	GCAGC	4 cut(s)	64, 67, 367, 431
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	2 cut(s)	213, 301
MaeIII	GTNAC	2 cut(s)	241, 332
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	2 cut(s)	191, 212
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	4 cut(s)	120, 140, 192, 207
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	1 cut(s)	309
MseI	TTAA	4 cut(s)	14, 144, 306, 387
MslI	CAYNNNNRTG	1 cut(s)	481
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	158, 360
MspR9I	CCNGG	3 cut(s)	158, 360, 438
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	377
NciI	CCSGG	2 cut(s)	158, 360
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	1 cut(s)	362
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	2 cut(s)	320, 357
NmuCI	GTSAC	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	467
PkrI	GCNGC	5 cut(s)	79, 82, 382, 421, 424
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	320, 357
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	14, 144, 306, 387
SatI	GCNGC	5 cut(s)	78, 81, 381, 420, 423
Sau3AI	GATC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	3 cut(s)	158, 360, 438
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	5 cut(s)	186, 216, 304, 342, 382
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	4 cut(s)	120, 140, 192, 207
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	3 cut(s)	156, 358, 436
TaaI	ACNGT	2 cut(s)	259, 283
TaiI	ACGT	2 cut(s)	216, 304
TasI	AATT	4 cut(s)	120, 140, 192, 207
TauI	GCSGC	1 cut(s)	425
Tru1I	TTAA	4 cut(s)	14, 144, 306, 387
Tru9I	TTAA	4 cut(s)	14, 144, 306, 387
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	77, 80, 380, 419
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	102, 465
XapI	RAATTY	2 cut(s)	120, 140
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.