Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009043

Physical Location & Seq

Genomic Coordinates Forward (+)

21492681 .. 21495108

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1178900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGTCTGAGTTAATAAATGCGAACCCGGTCATCTACGAAAAGAAAAAGCGTCGGGTTCGTAGCGTTCCAAGTGCTGCTGCTGATGAATATGCCGTTGAAGCCATTGACCAGCAAGAGATTTTTGATATCCTTTCTGACCCGGAACACCCTTATTCTTTGGAGGAGCTCAAAGTAATAACCGAAGATGCAATTGAAGTCGATGATGGCTGTGGCTACGTCAGGGTCACGTTTACTCCTACCGTGGAACATTGTAGTATGGCAACAGTTATTGGTCTTTGCTTACGTGTTAAACTCTTAAGGAGCTTGCCTTCTCGTTACAAGGTGGATATTAGGGTGGCACCGGGATCTCATGCAACCGAAGCTGCCGTTAATAAGCAACTGAATGATAAGGAACGGGTGGCTGCAGCGTTGGAGAACCCGGGCCTCGTTGATATGGTTGATGAATGCCTTTCTCCTTCATACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

157

Amino Acids

17.29

Weight (kDa)

4.79

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68310 AT1G68310
fragaria_vesca	FvH4_5g23251
malus_domestica	MD03G1162900.v1.1 MD11G1178900.v1.1
prunus_persica	Prupe.1G100200_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1
pyrus_communis	pycom03g11550 pycom11g15440
rosa_chinensis	RchiOBHm_Chr7g0212191 RchiOBHm_Chr7g0212201
rosa_laevigata	RLG00000002916
rosa_multiflora	Rmu_sc0002283.1_g000054 Rmu_sc0007204.1_g000023
rosa_roxburghii	Rroxscaffold_3G00247040
rosa_rugosa	Rorug07G0132000
rosa_samantha	Rh7BG259200
rosa_wichuraiana	Rw7G022610 Rw7G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AclWI	GGATC	1 cut(s)	355
AflII	CTTAAG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	101, 197
AluBI	AGCT	3 cut(s)	169, 306, 365
AluI	AGCT	3 cut(s)	169, 306, 365
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	421
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	5 cut(s)	77, 80, 365, 404, 407
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	5 cut(s)	29, 143, 345, 422, 423
AvaI	CYCGRG	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	64, 67, 352, 391, 419
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	80, 353
BcnI	CCSGG	5 cut(s)	29, 143, 345, 422, 423
BfmI	CTRYAG	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	298
BisI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
BlsI	GCNGC	5 cut(s)	79, 82, 367, 406, 409
Bme1390I	CCNGG	5 cut(s)	29, 143, 345, 422, 423
BmeT110I	CYCGRG	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	5 cut(s)	29, 143, 345, 422, 423
BmsI	GCATC	1 cut(s)	178
BpuMI	CCSGG	5 cut(s)	29, 143, 345, 422, 423
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	243, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
BseDI	CCNNGG	2 cut(s)	243, 421
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	5 cut(s)	64, 67, 352, 391, 419
BshFI	GGCC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	4 cut(s)	29, 143, 344, 422
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	340
BspTI	CTTAAG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	243, 421
BssMI	GATC	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	244, 268
BstAFI	CTTAAG	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 362
BstSCI	CCNGG	5 cut(s)	27, 141, 343, 420, 421
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	5 cut(s)	64, 67, 352, 391, 419
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	424
Cfr9I	CCCGGG	1 cut(s)	421
CseI	GACGC	1 cut(s)	41
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	8 cut(s)	104, 169, 210, 216, 306, 365, 404, 426
CviKI_1	RGCY	8 cut(s)	104, 169, 210, 216, 306, 365, 404, 426
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	1 cut(s)	356
FaiI	YATR	5 cut(s)	93, 260, 354, 437, 463
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
GluI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	4 cut(s)	29, 143, 344, 422
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	356
HpaII	CCGG	4 cut(s)	29, 143, 344, 422
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	2 cut(s)	10, 139
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	2 cut(s)	321, 468
HpyCH4III	ACNGT	2 cut(s)	244, 268
HpyCH4IV	ACGT	3 cut(s)	219, 230, 286
HpyCH4V	TGCA	3 cut(s)	191, 356, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 362
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	3 cut(s)	219, 230, 286
Hsp92II	CATG	1 cut(s)	356
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	2 cut(s)	166, 303
LpnPI	CCDG	6 cut(s)	42, 125, 156, 208, 357, 435
Lsp1109I	GCAGC	5 cut(s)	64, 67, 352, 391, 419
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	3 cut(s)	219, 230, 286
MaeIII	GTNAC	2 cut(s)	226, 317
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	2 cut(s)	157, 437
MseI	TTAA	4 cut(s)	14, 291, 299, 372
MslI	CAYNNNNRTG	1 cut(s)	466
MspCI	CTTAAG	1 cut(s)	298
MspI	CCGG	4 cut(s)	29, 143, 344, 422
MspR9I	CCNGG	5 cut(s)	29, 143, 345, 422, 423
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	101, 362
NciI	CCSGG	5 cut(s)	29, 143, 345, 422, 423
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	226
PctI	GAATGC	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	79, 82, 367, 406, 409
Ppu21I	YACGTR	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	14, 291, 299, 372
SatI	GCNGC	5 cut(s)	78, 81, 366, 405, 408
Sau3AI	GATC	1 cut(s)	347
Sau96I	GGNCC	1 cut(s)	424
ScrFI	CCNGG	5 cut(s)	29, 143, 345, 422, 423
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	7 cut(s)	171, 222, 233, 289, 308, 327, 367
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	405
SmaI	CCCGGG	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	5 cut(s)	27, 141, 343, 420, 421
TaaI	ACNGT	2 cut(s)	244, 268
TaiI	ACGT	3 cut(s)	222, 233, 289
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	192
Tru1I	TTAA	4 cut(s)	14, 291, 299, 372
Tru9I	TTAA	4 cut(s)	14, 291, 299, 372
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	5 cut(s)	77, 80, 365, 404, 407
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	102, 450, 459
TspMI	CCCGGG	1 cut(s)	421
Vha464I	CTTAAG	1 cut(s)	298
XmaI	CCCGGG	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.