Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002283.1

Orthogroup ID

OG0009043

Physical Location & Seq

Genomic Coordinates Forward (+)

210690 .. 213151

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002283.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgaaaagaaagagcggcggagatattaaagacccggaacacccttactctttggaagaactcaaagtaatttcagaagatgcaattgaagtagatgatggtcgtggtcatgttagggtcacatttactcctactgttgaacattgcagtatggcaacagttattggtctttgcatacgtgttaaactcttgaggagcctgccttctcgtttcaagggggacattaggggggcacctggatctcatgcaactgaagctgcagttaataagcaactgaatgataaagagcgggtagcagcggcattggaaaacccaaatgttgtggaaatggttgatgaatgccttactccttcatatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeS_assembly_P

Protein Analysis

120

Amino Acids

13.17

Weight (kDa)

5.56

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68310 AT1G68310
fragaria_vesca	FvH4_5g23251
malus_domestica	MD03G1162900.v1.1 MD11G1178900.v1.1
prunus_persica	Prupe.1G100200_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1 Prupe.6G151700_v2.0.a1
pyrus_communis	pycom03g11550 pycom11g15440
rosa_chinensis	RchiOBHm_Chr7g0212191 RchiOBHm_Chr7g0212201
rosa_laevigata	RLG00000002916
rosa_multiflora	Rmu_sc0002283.1_g000054 Rmu_sc0007204.1_g000023
rosa_roxburghii	Rroxscaffold_3G00247040
rosa_rugosa	Rorug07G0132000
rosa_samantha	Rh7BG259200
rosa_wichuraiana	Rw7G022610 Rw7G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccBSI	CCGCTC	2 cut(s)	15, 289
AciI	CCGC	4 cut(s)	15, 18, 289, 299
AclWI	GGATC	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	89, 140, 214
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
AlwI	GGATC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	257, 296
AsuC2I	CCSGG	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	244, 308
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	4 cut(s)	16, 258, 297, 300
BlsI	GCNGC	4 cut(s)	17, 259, 298, 301
Bme1390I	CCNGG	2 cut(s)	35, 237
BmiI	GGNNCC	2 cut(s)	197, 234
BmrFI	CCNGG	2 cut(s)	35, 237
BmsI	GCATC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	244, 308
BshNI	GGYRCC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	239
BspACI	CCGC	4 cut(s)	15, 18, 289, 299
BspLI	GGNNCC	2 cut(s)	197, 234
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	232
BsrBI	CCGCTC	2 cut(s)	15, 289
BsrDI	GCAATG	1 cut(s)	142
BssMI	GATC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	136, 160
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	33, 235
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	244, 308
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	200
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	2 cut(s)	110, 245
CviJI	RGCY	2 cut(s)	198, 257
CviKI_1	RGCY	2 cut(s)	198, 257
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	2 cut(s)	113, 248
FaiI	YATR	6 cut(s)	111, 152, 176, 246, 355, 357
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	109, 244
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	16, 258, 297, 300
Fsp4HI	GCNGC	4 cut(s)	16, 258, 297, 300
GluI	GCNGC	4 cut(s)	16, 258, 297, 300
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	2 cut(s)	113, 248
HpaII	CCGG	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	213, 360
HpyCH4III	ACNGT	2 cut(s)	136, 160
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	83, 147, 174, 248, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	113, 248
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	4 cut(s)	48, 212, 222, 249
Lsp1109I	GCAGC	2 cut(s)	244, 308
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	241
MbiI	CCGCTC	2 cut(s)	15, 289
MboI	GATC	1 cut(s)	239
MboII	GAAGA	2 cut(s)	68, 89
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	69, 84
MnlI	CCTC	1 cut(s)	186
MseI	TTAA	3 cut(s)	27, 183, 264
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	35, 237
MunI	CAATTG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	113, 248
NlaIV	GGNNCC	2 cut(s)	197, 234
NmuCI	GTSAC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	17, 259, 298, 301
Ppu21I	YACGTR	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	197, 234
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	27, 183, 264
SatI	GCNGC	4 cut(s)	16, 258, 297, 300
Sau3AI	GATC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	35, 237
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	3 cut(s)	181, 238, 259
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	69, 84
SsiI	CCGC	4 cut(s)	15, 18, 289, 299
StyD4I	CCNGG	2 cut(s)	33, 235
TaaI	ACNGT	2 cut(s)	136, 160
TaiI	ACGT	1 cut(s)	181
TasI	AATT	2 cut(s)	69, 84
TauI	GCSGC	2 cut(s)	18, 302
Tru1I	TTAA	3 cut(s)	27, 183, 264
Tru9I	TTAA	3 cut(s)	27, 183, 264
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	257, 296
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	17, 342, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.