Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010224

Physical Location & Seq

Genomic Coordinates Reverse (-)

41704975 .. 41710785

Gene Structure 5811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002915

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTTGCTCTTCCGCTTTCTTTCATCTTCATTCTTGGTCAACACCCAAAGCCTCCAACCCTCTGTCAAACACTCAAACGGTGATTGAGCCGGCCACCGGAATCGCTCCTTTTGAACCACCGACACGCAGTAATTGGGTCCTGTGCTTTGACAGTGAAGAGATGCAGAAATTGGGTGATTACAAGCTGCCTCAGTTCTTCAATTATCCGCCCTACTTCACGGATACGCGTGAGAAGCAGATACAACTATGGAAGGAGCTTATTCTTGATTACTGTAGAACACAGAAGATCTTTGTAATTGGACTGGAAGAAGACTTTCCTCTTTTTTCAAATCCTGTGATTGAAAGATCTCTCAGTCATGAAGCCAGGGAAGCATTCCTCTCAATTTTGGTTTCAGATGGTCGTGCAGAATGGTTAGATAAAAGGCATAGGAAATGTCTAATCCTCTGGCACAGGATTCAAGAGTGGGCTAACATAATTCTGAACTTCGTAAAAGAAAATGGATTGGAGGACAGCGTTATGACTGTTGAGGAAATACGTTCTGGGATAGAATCAAGAGGAACAGAGCTTCATGGTATTGACCGTACAATTCTGATGCGAGCTCTAAAACTACTAGAACAGAAGGGTAAGCTTGCAATCTTCAAGGGGACTACAGCTGATGATGAGGGTGTGAAATTCTCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042802 GO:0042803 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ESCRT-II

Protein Analysis

229

Amino Acids

26.34

Weight (kDa)

5.74

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ESCRT-II	PF05871	66 - 194	6.9e-41	ESCRT-II complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003
fragaria_vesca	FvH4_5g23270 FvH4_5g23270 FvH4_5g23270
malus_domestica	MD11G1243800.v1.1
prunus_persica	Prupe.4G182100_v2.0.a1
pyrus_communis	pycom11g21630
rosa_chinensis	RchiOBHm_Chr7g0212211
rosa_laevigata	RLG00000002915
rosa_multiflora	Rmu_sc0002283.1_g000056
rosa_roxburghii	Rroxscaffold_3G00247030
rosa_rugosa	Rorug07G0132000 Rorug07G0132100
rosa_samantha	Rh7BG259300
rosa_wichuraiana	Rw7G022630 Rw7G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	229
AciI	CCGC	2 cut(s)	15, 209
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	674
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	6 cut(s)	116, 202, 330, 344, 461, 643
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	6 cut(s)	187, 259, 568, 602, 631, 656
AluI	AGCT	6 cut(s)	187, 259, 568, 602, 631, 656
Alw21I	GWGCWC	1 cut(s)	604
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	94, 188
AvaII	GGWCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	367
BciVI	GTATCC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	2 cut(s)	274, 651
BfuI	GTATCC	1 cut(s)	217
BglII	AGATCT	2 cut(s)	288, 347
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	2 cut(s)	153, 585
BpiI	GAAGAC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	206, 367
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	2 cut(s)	92, 99
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	2 cut(s)	288, 347
BspACI	CCGC	2 cut(s)	15, 209
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	205, 366
BspFNI	CGCG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	288, 347
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	5 cut(s)	82, 155, 275, 526, 584
Bst6I	CTCTTC	2 cut(s)	16, 153
BstC8I	GCNNGC	4 cut(s)	7, 93, 600, 633
BstDEI	CTNAG	2 cut(s)	192, 353
BstFNI	CGCG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	291, 350
BstMBI	GATC	2 cut(s)	288, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 371
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	2 cut(s)	274, 651
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	288, 347
BstYI	RGATCY	2 cut(s)	288, 347
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	4 cut(s)	7, 93, 600, 633
CciI	TCATGA	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	2 cut(s)	359, 572
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	2 cut(s)	192, 353
DpnI	GATC	2 cut(s)	290, 349
DpnII	GATC	2 cut(s)	288, 347
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	16, 153
EarI	CTCTTC	2 cut(s)	16, 153
EciI	GGCGGA	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	602
Eco24I	GRGCYC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	604
FaeI	CATG	2 cut(s)	362, 575
FaiI	YATR	6 cut(s)	250, 360, 429, 476, 521, 573
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	2 cut(s)	358, 571
Fnu4HI	GCNGC	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	614
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	92, 99
Hin1II	CATG	2 cut(s)	362, 575
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	3 cut(s)	102, 457, 551
HpaII	CCGG	2 cut(s)	92, 99
HphI	GGTGA	2 cut(s)	94, 188
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	397, 483, 594, 686
Hpy188III	TCNNGA	4 cut(s)	266, 359, 461, 555
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	247, 616
HpyCH4III	ACNGT	5 cut(s)	82, 155, 275, 526, 584
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	3 cut(s)	166, 407, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 371
HpyF3I	CTNAG	2 cut(s)	192, 353
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	2 cut(s)	362, 575
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	288, 347
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	112, 256
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	2 cut(s)	153, 585
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	1 cut(s)	538
MalI	GATC	2 cut(s)	290, 349
MboI	GATC	2 cut(s)	288, 347
MboII	GAAGA	8 cut(s)	3, 20, 170, 190, 298, 320, 323, 631
MflI	RGATCY	2 cut(s)	288, 347
MhlI	GDGCHC	1 cut(s)	604
MluCI	AATT	8 cut(s)	133, 170, 202, 297, 384, 477, 588, 674
MluI	ACGCGT	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	81
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	2 cut(s)	92, 99
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	235, 371
NaeI	GCCGGC	1 cut(s)	93
NdeII	GATC	2 cut(s)	288, 347
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	362, 575
NlaIV	GGNNCC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	374
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	102, 457, 551
PkrI	GCNGC	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	604
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	288, 347
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	604
SapI	GCTCTTC	1 cut(s)	16
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	288, 347
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	604
SetI	ASST	7 cut(s)	189, 261, 541, 570, 604, 633, 658
SfaNI	GCATC	2 cut(s)	153, 585
SfcI	CTRYAG	2 cut(s)	274, 651
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	8 cut(s)	133, 170, 202, 297, 384, 477, 588, 674
SsiI	CCGC	2 cut(s)	15, 209
SspMI	CTAG	1 cut(s)	614
SstI	GAGCTC	1 cut(s)	604
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	5 cut(s)	82, 155, 275, 526, 584
TaiI	ACGT	1 cut(s)	541
TasI	AATT	8 cut(s)	133, 170, 202, 297, 384, 477, 588, 674
TfiI	GAWTC	3 cut(s)	102, 457, 551
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	4 cut(s)	14, 20, 375, 560
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.