Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010224

Physical Location & Seq

Genomic Coordinates Forward (+)

35498683 .. 35500083

Gene Structure 1401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1243800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCAGAAATTGGGAGATTTCAAGCTTCCCCAGTTCTTCAATTACCCTCCGTACTTCACACTCCAACCCGTCAGAGACACCCGAGAGAAGCAGATACAGCTATGGAAAGACCTCATACTCGACTACTGCAAAACCCACCACATATTCGTCATCGGATTGGAAGACCAAGAATTTCCGCTCTTCTCTAACCCCGCGATCGAGCGATCTCTCACCTACGAAGCCCGGGAAGCCTTCCTCTCGGCGTTGGTGGCGCAGGGCCGGGCGGAGTGGCTGGATAAGAGCCGCCGAAAGTGCCTTGTGCTATGGCATCGGATTCAGGACTGGGCTAATATTGTCCTGGACTTCGTCAAGGACAATGGATTGGAGGATAGTGTGATGACGGTTGAGGAAATCCGAACTGGGATTGAATCGAGGGGGACGGAGCTTCATGGGATTGATCGGACGGTTCTGATGAGGGCTTTGAAGATGCTGGAGCAGAAAGGGAAGCTTGCAATTTTCAAGGGGACTACCGCAGATGACGAGGGCGTGAAGTTTTCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042802 GO:0042803 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ESCRT-II

Protein Analysis

181

Amino Acids

20.98

Weight (kDa)

6.11

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ESCRT-II	PF05871	12 - 146	6.2e-47	ESCRT-II complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0010224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003
fragaria_vesca	FvH4_5g23270 FvH4_5g23270 FvH4_5g23270
malus_domestica	MD11G1243800.v1.1
prunus_persica	Prupe.4G182100_v2.0.a1
pyrus_communis	pycom11g21630
rosa_chinensis	RchiOBHm_Chr7g0212211
rosa_laevigata	RLG00000002915
rosa_multiflora	Rmu_sc0002283.1_g000056
rosa_roxburghii	Rroxscaffold_3G00247030
rosa_rugosa	Rorug07G0132000 Rorug07G0132100
rosa_samantha	Rh7BG259300
rosa_wichuraiana	Rw7G022630 Rw7G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	178
AccII	CGCG	1 cut(s)	194
AciI	CCGC	5 cut(s)	176, 192, 263, 283, 510
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	22, 40, 407, 463, 499
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	4 cut(s)	25, 100, 424, 487
AluI	AGCT	4 cut(s)	25, 100, 424, 487
Alw26I	GTCTC	1 cut(s)	69
Ama87I	CYCGRG	2 cut(s)	81, 222
AoxI	GGCC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	3 cut(s)	223, 224, 260
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	2 cut(s)	81, 222
BbsI	GAAGAC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	3 cut(s)	223, 224, 260
BcoDI	GTCTC	1 cut(s)	69
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	4 cut(s)	223, 224, 260, 338
BmeT110I	CYCGRG	2 cut(s)	81, 222
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	4 cut(s)	223, 224, 260, 338
BmrI	ACTGGG	3 cut(s)	25, 331, 408
BmsI	GCATC	2 cut(s)	316, 456
BmuI	ACTGGG	3 cut(s)	25, 331, 408
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	223, 224, 260
BsaJI	CCNNGG	1 cut(s)	222
Bse1I	ACTGG	3 cut(s)	31, 326, 403
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	222
BseNI	ACTGG	3 cut(s)	31, 326, 403
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	198
BsiHKCI	CYCGRG	2 cut(s)	81, 222
BsiSI	CCGG	2 cut(s)	223, 259
BslFI	GGGAC	2 cut(s)	430, 517
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	430, 517
BsnI	GGCC	1 cut(s)	258
BsoBI	CYCGRG	2 cut(s)	81, 222
Bsp143I	GATC	3 cut(s)	195, 203, 436
BspACI	CCGC	5 cut(s)	176, 192, 263, 283, 510
BspANI	GGCC	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	31, 326, 403
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	195, 203, 436
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	382, 445
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	489
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	198, 206, 439
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	195, 203, 436
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 227, 248, 291
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	4 cut(s)	221, 222, 258, 336
BstUI	CGCG	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	489
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	256
Cfr9I	CCCGGG	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	428
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	3 cut(s)	197, 205, 438
DpnII	GATC	3 cut(s)	195, 203, 436
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	81, 222
EcoRII	CCWGG	1 cut(s)	336
FaeI	CATG	1 cut(s)	431
FaiI	YATR	5 cut(s)	103, 116, 143, 304, 429
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	2 cut(s)	430, 517
FatI	CATG	1 cut(s)	427
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	283
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	223, 259
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	2 cut(s)	23, 485
HinfI	GANTC	2 cut(s)	313, 407
HpaII	CCGG	2 cut(s)	223, 259
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	6 cut(s)	74, 155, 312, 395, 441, 450
Hpy188III	TCNNGA	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	382, 445
HpyCH4V	TGCA	3 cut(s)	4, 129, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 227, 248, 291
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	3 cut(s)	195, 203, 436
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	421, 472
LweI	GCATC	2 cut(s)	316, 456
MalI	GATC	3 cut(s)	197, 205, 438
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	3 cut(s)	195, 203, 436
MboII	GAAGA	4 cut(s)	28, 172, 173, 475
MluCI	AATT	4 cut(s)	8, 40, 170, 492
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	57, 122, 245, 358, 379, 405, 447, 514
MspI	CCGG	2 cut(s)	223, 259
MspR9I	CCNGG	4 cut(s)	223, 224, 260, 338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	97, 227, 248, 291
NciI	CCSGG	3 cut(s)	223, 224, 260
NdeII	GATC	3 cut(s)	195, 203, 436
NlaIII	CATG	1 cut(s)	431
NmeAIII	GCCGAG	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	313, 407
PflFI	GACNNNGTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	284
Ple19I	CGATCG	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	198
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	3 cut(s)	195, 203, 436
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	4 cut(s)	223, 224, 260, 338
SetI	ASST	6 cut(s)	27, 102, 114, 215, 426, 489
SfaNI	GCATC	2 cut(s)	316, 456
SmaI	CCCGGG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	8, 40, 170, 492
SsiI	CCGC	5 cut(s)	176, 192, 263, 283, 510
SspI	AATATT	1 cut(s)	331
StyD4I	CCNGG	4 cut(s)	221, 222, 258, 336
TaaI	ACNGT	2 cut(s)	382, 445
TaqI	TCGA	4 cut(s)	120, 198, 410, 536
TasI	AATT	4 cut(s)	8, 40, 170, 492
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	313, 407
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	2 cut(s)	39, 434
TspMI	CCCGGG	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	170
XmaI	CCCGGG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.