Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010224

Physical Location & Seq

Genomic Coordinates Forward (+)

26833621 .. 26838676

Gene Structure 5056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAGAAATTGGGTGATTACAAGCTGCCTCAGTTCTTCAATTATCCTCCCTACTTCACGTTACAACCAGTAAGGGATACGCGTGAGAAGCAGATACAACTATGGAAGGAGCTTATTCTTGATTACTGTAGAACACAGAAGATCTTTGTAATTGGACTGGAAGAAGACTTTCCTCTTTTTTCAAATCCTGTGATTGAAAGATCTCTCAGTCATGAAGCCAGGGAAGCATTCCTCTCAATTTTGGTTTCAGATGGTCGTGCAGAATGGTTAGATAAAAGGCATAGGAAATGTCTAATCCTCTGGCACAGGATTCAAGAGTGGGCTAACATAATTCTGAACTTCGTAAAAGAAAATGGATTGGAGGACAGCGTTATGACTGTTGAGGAAATACGTTCTGGGATAGAATCAAGAGGAACAGAGCTTCATGGTATTGACCGTACAATTCTGATGCGAGCTCTAAAACTACTAGAACAGAAGGGTAAGCTTGCAATCTTCAAGGGGACTACAGCTGATGATGAGGGTGTGAAATTCTCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042802 GO:0042803 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ESCRT-II

Protein Analysis

179

Amino Acids

21.01

Weight (kDa)

6.45

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ESCRT-II	PF05871	12 - 145	2.2e-47	ESCRT-II complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003
fragaria_vesca	FvH4_5g23270 FvH4_5g23270 FvH4_5g23270
malus_domestica	MD11G1243800.v1.1
prunus_persica	Prupe.4G182100_v2.0.a1
pyrus_communis	pycom11g21630
rosa_chinensis	RchiOBHm_Chr7g0212211
rosa_laevigata	RLG00000002915
rosa_multiflora	Rmu_sc0002283.1_g000056
rosa_roxburghii	Rroxscaffold_3G00247030
rosa_rugosa	Rorug07G0132000 Rorug07G0132100
rosa_samantha	Rh7BG259300
rosa_wichuraiana	Rw7G022630 Rw7G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	527
AfaI	GTAC	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	5 cut(s)	40, 183, 197, 314, 496
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	25, 112, 421, 455, 484, 509
AluI	AGCT	6 cut(s)	25, 112, 421, 455, 484, 509
Alw21I	GWGCWC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	220
BciVI	GTATCC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	2 cut(s)	127, 504
BfuI	GTATCC	1 cut(s)	70
BglII	AGATCT	2 cut(s)	141, 200
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	68, 162
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	44, 220
BseNI	ACTGG	2 cut(s)	68, 162
BseXI	GCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	141, 200
BspCNI	CTCAG	2 cut(s)	43, 219
BspFNI	CGCG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	68, 162
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	141, 200
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	128, 379, 437
BstC8I	GCNNGC	2 cut(s)	453, 486
BstDEI	CTNAG	2 cut(s)	30, 206
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	144, 203
BstMBI	GATC	2 cut(s)	141, 200
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 224
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	127, 504
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	141, 200
BstYI	RGATCY	2 cut(s)	141, 200
BsuI	GTATCC	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	453, 486
CciI	TCATGA	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	2 cut(s)	212, 425
CviJI	RGCY	8 cut(s)	25, 112, 218, 323, 421, 455, 484, 509
CviKI_1	RGCY	8 cut(s)	25, 112, 218, 323, 421, 455, 484, 509
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	2 cut(s)	30, 206
DpnI	GATC	2 cut(s)	143, 202
DpnII	GATC	2 cut(s)	141, 200
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	457
FaeI	CATG	2 cut(s)	215, 428
FaiI	YATR	6 cut(s)	103, 213, 282, 329, 374, 426
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	2 cut(s)	211, 424
Fnu4HI	GCNGC	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	215, 428
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	2 cut(s)	310, 404
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	4 cut(s)	250, 336, 447, 539
Hpy188III	TCNNGA	4 cut(s)	119, 212, 314, 408
HpyAV	CCTTC	2 cut(s)	100, 469
HpyCH4III	ACNGT	3 cut(s)	128, 379, 437
HpyCH4IV	ACGT	2 cut(s)	59, 391
HpyCH4V	TGCA	3 cut(s)	4, 260, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 224
HpyF3I	CTNAG	2 cut(s)	30, 206
HpySE526I	ACGT	2 cut(s)	59, 391
Hsp92II	CATG	2 cut(s)	215, 428
Kzo9I	GATC	2 cut(s)	141, 200
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	8 cut(s)	81, 143, 201, 205, 232, 286, 292, 381
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	2 cut(s)	59, 391
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	2 cut(s)	143, 202
MboI	GATC	2 cut(s)	141, 200
MboII	GAAGA	5 cut(s)	28, 151, 173, 176, 484
MflI	RGATCY	2 cut(s)	141, 200
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	7 cut(s)	8, 40, 150, 237, 330, 441, 527
MluI	ACGCGT	1 cut(s)	80
MnlI	CCTC	9 cut(s)	39, 57, 183, 242, 308, 355, 376, 404, 511
MroXI	GAANNNNTTC	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	88, 224
NdeII	GATC	2 cut(s)	141, 200
NlaIII	CATG	2 cut(s)	215, 428
PagI	TCATGA	1 cut(s)	211
PctI	GAATGC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	310, 404
PkrI	GCNGC	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	141, 200
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	457
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	141, 200
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	8 cut(s)	27, 62, 114, 394, 423, 457, 486, 511
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	2 cut(s)	127, 504
Sse9I	AATT	7 cut(s)	8, 40, 150, 237, 330, 441, 527
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	128, 379, 437
TaiI	ACGT	2 cut(s)	62, 394
TasI	AATT	7 cut(s)	8, 40, 150, 237, 330, 441, 527
TfiI	GAWTC	2 cut(s)	310, 404
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	228, 413
XapI	RAATTY	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.