Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010224

Physical Location & Seq

Genomic Coordinates Forward (+)

24716624 .. 24717565

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTACAAATTTTATCTACAAATTTATATTCCTTCATTACCCGACGTGGAAATACATGACTCGGCAATTGCAAAAGGAAAAATGAAGGGAGACGGAGTGGGGAAAAGGGTCAGGAAAACTGGACCATTAAATACGTGGCACATTCAGAACGTTTTGATTATTTTGAACGCATTTGCAAAGAGGACTCCCTTATATTTTCAATGCCGCCCCTTGTTTCGTCAATTGTCAGCAAAACGGCGTCGGACTGATCTTTTAGCCTCAGAAACTCTCTGCTCCTCTACCAGTAAACTACCCACTCCCACCGTCCTCCGCCACAGTCAAAAATTGGGAGATTTCAAGCTTCCCCAGTTCTTCAATTACCCTCCGTACTTCACACTCCAACCCGTCAGAGACACCCGAGAGAAGCAGATACAGCTATGGAAAGACCTCATCCTCGACTACTGCAAAACCCACCACATATTCGTCATCGGATTGGAAGACCAAGACTTTCCGCTCTTCTCTAACCCCGCGATCGAGCGATCTCTCACCTACGAAGCCCGGGAAGCCTTCCTCTCGGCGTTGGTGGCGCAGGGCCGGGCGGAGTGGCTGGATAAAAGCCGCCGAAAGTGCCTTGTTTTATGGCATCGGATTCAGGACTGGGCTAATATTGTCCTGGACTTCGTCAAGGACAATGGGTTGGAGGATAGTGTGATGACGGTTGAGGAAATCCGAACTGGGATTGAATCGAGGGGGACGGAGCTTCATGGGATTGATCGGACGGTTCTGATGAGGGCTTTGAAGATGCTGGAGCAGAAAGGGAAGCTTGCAATCTTCAAGGGGACTACCGCAGATGACGAGGGCGTGAAGTTTTCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042802 GO:0042803 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ESCRT-II

Protein Analysis

286

Amino Acids

32.93

Weight (kDa)

9.41

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ESCRT-II	PF05871	117 - 251	3.1e-46	ESCRT-II complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003 AT4G19003
fragaria_vesca	FvH4_5g23270 FvH4_5g23270 FvH4_5g23270
malus_domestica	MD11G1243800.v1.1
prunus_persica	Prupe.4G182100_v2.0.a1
pyrus_communis	pycom11g21630
rosa_chinensis	RchiOBHm_Chr7g0212211
rosa_laevigata	RLG00000002915
rosa_multiflora	Rmu_sc0002283.1_g000056
rosa_roxburghii	Rroxscaffold_3G00247030
rosa_rugosa	Rorug07G0132000 Rorug07G0132100
rosa_samantha	Rh7BG259300
rosa_wichuraiana	Rw7G022630 Rw7G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	493
AccII	CGCG	1 cut(s)	509
AciI	CCGC	7 cut(s)	205, 310, 491, 507, 578, 598, 825
AclI	AACGTT	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	8, 21
AcyI	GRCGYC	1 cut(s)	238
AfaI	GTAC	2 cut(s)	5, 368
AgsI	TTSAA	7 cut(s)	166, 200, 337, 355, 722, 778, 814
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	4 cut(s)	340, 415, 739, 802
AluI	AGCT	4 cut(s)	340, 415, 739, 802
Alw26I	GTCTC	2 cut(s)	84, 384
Ama87I	CYCGRG	2 cut(s)	396, 537
AoxI	GGCC	1 cut(s)	571
ApoI	RAATTY	2 cut(s)	8, 21
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	122, 571
AsuC2I	CCSGG	3 cut(s)	538, 539, 575
AsuHPI	GGTGA	1 cut(s)	517
AvaI	CYCGRG	2 cut(s)	396, 537
AvaII	GGWCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	483
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	653
BcnI	CCSGG	3 cut(s)	538, 539, 575
BcoDI	GTCTC	2 cut(s)	84, 384
BisI	GCNGC	2 cut(s)	205, 598
BlsI	GCNGC	2 cut(s)	206, 599
Bme1390I	CCNGG	4 cut(s)	538, 539, 575, 653
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	2 cut(s)	396, 537
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	122, 571
BmrFI	CCNGG	4 cut(s)	538, 539, 575, 653
BmrI	ACTGGG	3 cut(s)	340, 646, 723
BmsI	GCATC	2 cut(s)	631, 771
BmuI	ACTGGG	3 cut(s)	340, 646, 723
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	806
BpuMI	CCSGG	3 cut(s)	538, 539, 575
BsaAI	YACGTR	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	537
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bse1I	ACTGG	5 cut(s)	124, 282, 346, 641, 718
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	5 cut(s)	124, 282, 346, 641, 718
BseRI	GAGGAG	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	573
BsiEI	CGRYCG	1 cut(s)	513
BsiHKCI	CYCGRG	2 cut(s)	396, 537
BsiSI	CCGG	2 cut(s)	538, 574
BslFI	GGGAC	2 cut(s)	745, 832
BsmAI	GTCTC	2 cut(s)	84, 384
BsmBI	CGTCTC	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	745, 832
BsnI	GGCC	1 cut(s)	573
BsoBI	CYCGRG	2 cut(s)	396, 537
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	247, 510, 518, 751
BspACI	CCGC	7 cut(s)	205, 310, 491, 507, 578, 598, 825
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	509
BspQI	GCTCTTC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	124, 282, 346, 641, 718
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	4 cut(s)	247, 510, 518, 751
BssNI	GRCGYC	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	4 cut(s)	304, 317, 697, 760
Bst6I	CTCTTC	1 cut(s)	500
BstACI	GRCGYC	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	804
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	4 cut(s)	250, 513, 521, 754
BstMAI	GTCTC	2 cut(s)	84, 384
BstMBI	GATC	4 cut(s)	247, 510, 518, 751
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	4 cut(s)	412, 542, 563, 606
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	4 cut(s)	536, 537, 573, 651
BstUI	CGCG	1 cut(s)	509
BstV2I	GAAGAC	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	804
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	122, 571
Cfr9I	CCCGGG	1 cut(s)	537
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	4, 367
CviAII	CATG	2 cut(s)	56, 743
CviQI	GTAC	2 cut(s)	4, 367
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	4 cut(s)	249, 512, 520, 753
DpnII	GATC	4 cut(s)	247, 510, 518, 751
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
EciI	GGCGGA	2 cut(s)	299, 593
Eco47I	GGWCC	1 cut(s)	122
Eco88I	CYCGRG	2 cut(s)	396, 537
EcoRII	CCWGG	1 cut(s)	651
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	2 cut(s)	59, 746
FaiI	YATR	7 cut(s)	27, 57, 193, 418, 458, 619, 744
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	2 cut(s)	745, 832
FatI	CATG	2 cut(s)	55, 742
FauI	CCCGC	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	205, 598
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	205, 598
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	2 cut(s)	205, 598
GsuI	CTGGAG	1 cut(s)	806
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	2 cut(s)	538, 574
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	59, 746
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	2 cut(s)	338, 800
HinfI	GANTC	4 cut(s)	59, 184, 628, 722
HpaII	CCGG	2 cut(s)	538, 574
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	9 cut(s)	147, 243, 262, 389, 470, 627, 710, 756, 765
Hpy188III	TCNNGA	2 cut(s)	112, 632
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	2 cut(s)	47, 243
HpyAV	CCTTC	3 cut(s)	42, 79, 556
HpyCH4III	ACNGT	4 cut(s)	304, 317, 697, 760
HpyCH4IV	ACGT	3 cut(s)	45, 134, 150
HpyCH4V	TGCA	4 cut(s)	71, 176, 444, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	412, 542, 563, 606
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	3 cut(s)	45, 134, 150
Hsp92I	GRCGYC	1 cut(s)	238
Hsp92II	CATG	2 cut(s)	59, 746
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	4 cut(s)	247, 510, 518, 751
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	3 cut(s)	278, 736, 787
LweI	GCATC	2 cut(s)	631, 771
MaeII	ACGT	3 cut(s)	45, 134, 150
MalI	GATC	4 cut(s)	249, 512, 520, 753
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	4 cut(s)	247, 510, 518, 751
MboII	GAAGA	5 cut(s)	343, 487, 488, 790, 802
MfeI	CAATTG	2 cut(s)	66, 221
MluCI	AATT	6 cut(s)	8, 21, 66, 221, 323, 355
MlyI	GAGTC	2 cut(s)	53, 178
MmeI	TCCRAC	3 cut(s)	221, 403, 657
MseI	TTAA	1 cut(s)	128
MspI	CCGG	2 cut(s)	538, 574
MspR9I	CCNGG	4 cut(s)	538, 539, 575, 653
MunI	CAATTG	2 cut(s)	66, 221
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	4 cut(s)	412, 542, 563, 606
NciI	CCSGG	3 cut(s)	538, 539, 575
NdeII	GATC	4 cut(s)	247, 510, 518, 751
NlaIII	CATG	2 cut(s)	59, 746
NmeAIII	GCCGAG	2 cut(s)	41, 533
PciSI	GCTCTTC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	628, 722
PflFI	GACNNNGTC	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	2 cut(s)	206, 599
Ple19I	CGATCG	1 cut(s)	513
PleI	GAGTC	2 cut(s)	53, 178
PpsI	GAGTC	2 cut(s)	53, 178
Ppu21I	YACGTR	1 cut(s)	135
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	122, 571
PsyI	GACNNNGTC	1 cut(s)	659
PvuI	CGATCG	1 cut(s)	513
RsaI	GTAC	2 cut(s)	5, 368
RsaNI	GTAC	2 cut(s)	4, 367
SapI	GCTCTTC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	2 cut(s)	205, 598
Sau3AI	GATC	4 cut(s)	247, 510, 518, 751
Sau96I	GGNCC	2 cut(s)	122, 571
SchI	GAGTC	2 cut(s)	53, 178
ScrFI	CCNGG	4 cut(s)	538, 539, 575, 653
SetI	ASST	9 cut(s)	48, 137, 153, 342, 417, 429, 530, 741, 804
SfaNI	GCATC	2 cut(s)	631, 771
SinI	GGWCC	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	539
Sse9I	AATT	6 cut(s)	8, 21, 66, 221, 323, 355
SsiI	CCGC	7 cut(s)	205, 310, 491, 507, 578, 598, 825
SspI	AATATT	1 cut(s)	646
StyD4I	CCNGG	4 cut(s)	536, 537, 573, 651
TaaI	ACNGT	4 cut(s)	304, 317, 697, 760
TaiI	ACGT	3 cut(s)	48, 137, 153
TaqI	TCGA	4 cut(s)	435, 513, 725, 851
TasI	AATT	6 cut(s)	8, 21, 66, 221, 323, 355
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	207, 600
TfiI	GAWTC	2 cut(s)	628, 722
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	24, 98, 731
TspGWI	ACGGA	3 cut(s)	108, 354, 749
TspMI	CCCGGG	1 cut(s)	537
Tth111I	GACNNNGTC	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	8, 21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XmaI	CCCGGG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.