Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009252

Physical Location & Seq

Genomic Coordinates Reverse (-)

10409148 .. 10411467

Gene Structure 2320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19006.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTGCTCTACAATACCTTGAATCGCAGAAAAATGCGCACCCAGAGCTTGGTGAGTGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTCTGGCATCAGCTCACTCTTAAGCTCGAGCAGTTCATCGCTCTCTCTGTCTTTCAGGCTGGAGATGCTTTAATACAGCTTTACAACAATTTCATCACTGACTTTGAGACGAGGATCAATCTTCTGAAGCTTGCGCATTTCGCTGTTGTAGTCTCCCGACAGTATCCTGAGAAAGAAGCTGCAGTTAGTTATCTTGAAGGAGTGATTGAGAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAACCAATTAGCTATATAGAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGGAGTGCAAGAAAATCTTGGACGATGGAAAAAGCCTGCTTGATAGTATGACTGACATTGATCCATCAGTTTATGCCAACTTCTTTTGGGTCTCTTCTCAGTACCATAAAGTCCGTCAAGAGTTCTCTGAGTTCTATAAAAATGCTCTTCTTTACCTCGCTTATACGTCTGTGGACTCACTCTCGGAATCATTTAAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGGGAGAATATCTATAACTTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAAATGTGGAATGGCTTTACCACATTCTACAAGCATTCAACCACGGAGATTTAGTTCAGTACCAAGAACTCTGTCGTGTGCACAATGCATCGTTGAGTGCTCAACCAGCACTGGTTGAGAATGAGAAGAAACTATTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGACCTGCTGAAGATAGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCGAAGATGTTGAGCACCTTCTCATGAAGAGCTTATCGGTGCACTTGATAGAGGGAATACTAGATCAGGTGAATGGAACAGTTTACGTCTCATGGGCGCAACCGAGGGTGTTAGGAATACCGCAGATCAAGTCATTGAGGGATCAGCTAGACAGCTGGGTCGATAAGGTTCACACCACATTGTTATCTGTTGAGGCCGAGACACCTGATCTTGTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030163 GO:0032991 GO:0034622 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

386

Amino Acids

44.02

Weight (kDa)

5.11

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSD13_N	PF22037	21 - 242	1.4e-73	PSD13 N-terminal repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19006 AT4G19006 AT5G45620 AT5G45620
fragaria_vesca	FvH4_5g23350 FvH4_5g23350 FvH4_5g23350
malus_domestica	MD06G1024700.v1.1 MD16G1281300.v1.1
prunus_persica	Prupe.5G025900_v2.0.a1
pyrus_communis	pycom06g02000 pycom16g25120
rosa_chinensis	RchiOBHm_Chr7g0212291
rosa_laevigata	RLG00000002897
rosa_multiflora	Rmu_sc0001911.1_g000049
rosa_roxburghii	Rroxscaffold_3G00246920
rosa_rugosa	Rorug07G0133400
rosa_samantha	Rh7AG266000 Rh7BG260100 Rh7CG282900 Rh7DG272900
rosa_wichuraiana	Rw7G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1094
Acc16I	TGCGCA	2 cut(s)	39, 228
Acc36I	ACCTGC	1 cut(s)	889
AccB7I	CCANNNNNTGG	1 cut(s)	50
AciI	CCGC	1 cut(s)	1058
AclWI	GGATC	3 cut(s)	215, 452, 1086
AcuI	CTGAAG	2 cut(s)	239, 906
AfaI	GTAC	5 cut(s)	62, 83, 500, 758, 925
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	6 cut(s)	23, 290, 376, 682, 736, 936
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
Alw21I	GWGCWC	4 cut(s)	780, 799, 954, 981
Alw26I	GTCTC	5 cut(s)	194, 250, 493, 1030, 1130
Alw44I	GTGCAC	2 cut(s)	776, 977
AlwI	GGATC	3 cut(s)	215, 452, 1086
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	1131
ApaLI	GTGCAC	2 cut(s)	776, 977
ApeKI	GCWGC	3 cut(s)	5, 272, 1154
ArsI	GACNNNNNNTTYG	2 cut(s)	886, 918
AspLEI	GCGC	3 cut(s)	40, 229, 1036
AspS9I	GGNCC	1 cut(s)	894
AsuHPI	GGTGA	3 cut(s)	65, 401, 1018
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	894
BaeGI	GKGCMC	2 cut(s)	780, 981
Bbv12I	GWGCWC	4 cut(s)	780, 799, 954, 981
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	416, 469, 678
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	5 cut(s)	194, 250, 493, 1030, 1130
BfaI	CTAG	2 cut(s)	998, 1085
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	889
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	3 cut(s)	6, 273, 1155
BlsI	GCNGC	3 cut(s)	7, 274, 1156
Bme18I	GGWCC	1 cut(s)	894
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	894
BmsI	GCATC	3 cut(s)	109, 148, 794
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	2 cut(s)	739, 1040
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	813
Bse3DI	GCAATG	1 cut(s)	912
BseDI	CCNNGG	2 cut(s)	739, 1040
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	3 cut(s)	252, 509, 516
BseNI	ACTGG	1 cut(s)	813
BseSI	GKGCMC	2 cut(s)	780, 981
BseXI	GCAGC	1 cut(s)	259
BseYI	CCCAGC	1 cut(s)	1092
BshFI	GGCC	1 cut(s)	1133
BsiHKAI	GWGCWC	4 cut(s)	780, 799, 954, 981
BsiHKCI	CYCGRG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	5 cut(s)	194, 250, 493, 1030, 1130
BsmBI	CGTCTC	2 cut(s)	194, 1030
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	1 cut(s)	1133
Bso31I	GGTCTC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	4 cut(s)	780, 799, 954, 981
Bsp143I	GATC	9 cut(s)	76, 207, 457, 840, 864, 1000, 1062, 1078, 1144
BspACI	CCGC	1 cut(s)	1058
BspANI	GGCC	1 cut(s)	1133
BspCNI	CTCAG	3 cut(s)	253, 508, 517
BspHI	TCATGA	1 cut(s)	960
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	889
BspPI	GGATC	3 cut(s)	215, 452, 1086
BspQI	GCTCTTC	2 cut(s)	549, 959
BspTI	CTTAAG	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	813
BssECI	CCNNGG	2 cut(s)	739, 1040
BssMI	GATC	9 cut(s)	76, 207, 457, 840, 864, 1000, 1062, 1078, 1144
Bst4CI	ACNGT	3 cut(s)	255, 663, 1018
Bst6I	CTCTTC	3 cut(s)	496, 549, 959
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	72, 225, 434
BstDEI	CTNAG	3 cut(s)	261, 495, 525
BstDSI	CCRYGG	1 cut(s)	739
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	670
BstHHI	GCGC	3 cut(s)	40, 229, 1036
BstKTI	GATC	9 cut(s)	79, 210, 460, 843, 867, 1003, 1065, 1081, 1147
BstMAI	GTCTC	5 cut(s)	194, 250, 493, 1030, 1130
BstMBI	GATC	9 cut(s)	76, 207, 457, 840, 864, 1000, 1062, 1078, 1144
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 158, 233, 803
BstPI	GGTNACC	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	2 cut(s)	780, 981
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	1133
BtgI	CCRYGG	1 cut(s)	739
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	189, 806
BveI	ACCTGC	1 cut(s)	889
Cac8I	GCNNGC	3 cut(s)	72, 225, 434
CciI	TCATGA	1 cut(s)	960
CfoI	GCGC	3 cut(s)	40, 229, 1036
Cfr13I	GGNCC	1 cut(s)	894
Csp6I	GTAC	5 cut(s)	61, 82, 499, 757, 924
CviAII	CATG	2 cut(s)	961, 1029
CviQI	GTAC	5 cut(s)	61, 82, 499, 757, 924
DdeI	CTNAG	3 cut(s)	261, 495, 525
DpnI	GATC	9 cut(s)	78, 209, 459, 842, 866, 1002, 1064, 1080, 1146
DpnII	GATC	9 cut(s)	76, 207, 457, 840, 864, 1000, 1062, 1078, 1144
DrdI	GACNNNNNNGTC	1 cut(s)	1094
DseDI	GACNNNNNNGTC	1 cut(s)	1094
Eam1104I	CTCTTC	3 cut(s)	496, 549, 959
EarI	CTCTTC	3 cut(s)	496, 549, 959
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	894
Eco57I	CTGAAG	2 cut(s)	239, 906
Eco88I	CYCGRG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
EcoT22I	ATGCAT	1 cut(s)	787
Esp3I	CGTCTC	2 cut(s)	194, 1030
FaeI	CATG	2 cut(s)	964, 1032
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	2 cut(s)	960, 1028
Fnu4HI	GCNGC	3 cut(s)	6, 273, 1155
FokI	GGATG	1 cut(s)	657
Fsp4HI	GCNGC	3 cut(s)	6, 273, 1155
FspAI	RTGCGCAY	1 cut(s)	39
FspBI	CTAG	2 cut(s)	998, 1085
FspI	TGCGCA	2 cut(s)	39, 228
GlaI	GCGC	3 cut(s)	39, 228, 1035
GluI	GCNGC	3 cut(s)	6, 273, 1155
GsaI	CCCAGC	1 cut(s)	1096
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	1133
HhaI	GCGC	3 cut(s)	40, 229, 1036
Hin1II	CATG	2 cut(s)	964, 1032
Hin6I	GCGC	3 cut(s)	38, 227, 1034
HinP1I	GCGC	3 cut(s)	38, 227, 1034
HindIII	AAGCTT	3 cut(s)	221, 305, 377
HinfI	GANTC	4 cut(s)	23, 323, 572, 584
HphI	GGTGA	3 cut(s)	65, 401, 1018
Hpy166II	GTNNAC	5 cut(s)	571, 778, 979, 1021, 1108
Hpy188I	TCNGA	3 cut(s)	219, 526, 583
Hpy188III	TCNNGA	5 cut(s)	249, 260, 287, 515, 961
Hpy8I	GTNNAC	5 cut(s)	571, 778, 979, 1021, 1108
HpyAV	CCTTC	3 cut(s)	284, 391, 965
HpyCH4III	ACNGT	3 cut(s)	255, 663, 1018
HpyCH4IV	ACGT	2 cut(s)	563, 1023
HpyCH4V	TGCA	6 cut(s)	275, 405, 778, 785, 979, 1154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 158, 233, 803
HpyF3I	CTNAG	3 cut(s)	261, 495, 525
HpySE526I	ACGT	2 cut(s)	563, 1023
Hsp92II	CATG	2 cut(s)	964, 1032
HspAI	GCGC	3 cut(s)	38, 227, 1034
Kzo9I	GATC	9 cut(s)	76, 207, 457, 840, 864, 1000, 1062, 1078, 1144
LguI	GCTCTTC	2 cut(s)	549, 959
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	3 cut(s)	109, 148, 794
MaeI	CTAG	2 cut(s)	998, 1085
MaeII	ACGT	2 cut(s)	563, 1023
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	9 cut(s)	78, 209, 459, 842, 866, 1002, 1064, 1080, 1146
MboI	GATC	9 cut(s)	76, 207, 457, 840, 864, 1000, 1062, 1078, 1144
MboII	GAAGA	9 cut(s)	100, 206, 483, 536, 835, 850, 899, 953, 976
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	4 cut(s)	780, 799, 954, 981
MluCI	AATT	4 cut(s)	64, 181, 342, 675
MlyI	GAGTC	2 cut(s)	332, 566
MnlI	CCTC	6 cut(s)	198, 563, 982, 1035, 1068, 1123
Mph1103I	ATGCAT	1 cut(s)	787
MseI	TTAA	5 cut(s)	114, 164, 309, 591, 1159
MspA1I	CMGCKG	1 cut(s)	1092
MspCI	CTTAAG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	731
MwoI	GCNNNNNNNGC	4 cut(s)	46, 158, 233, 803
NdeII	GATC	9 cut(s)	76, 207, 457, 840, 864, 1000, 1062, 1078, 1144
NlaIII	CATG	2 cut(s)	964, 1032
NmeAIII	GCCGAG	2 cut(s)	943, 1159
NmuCI	GTSAC	1 cut(s)	389
NsbI	TGCGCA	2 cut(s)	39, 228
NsiI	ATGCAT	1 cut(s)	787
PaeR7I	CTCGAG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	960
PciSI	GCTCTTC	2 cut(s)	549, 959
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	23, 584
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	7, 274, 1156
PleI	GAGTC	2 cut(s)	331, 566
PpsI	GAGTC	2 cut(s)	331, 566
PspEI	GGTNACC	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	1092
PspPI	GGNCC	1 cut(s)	894
PspXI	VCTCGAGB	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	1092
RsaI	GTAC	5 cut(s)	62, 83, 500, 758, 925
RsaNI	GTAC	5 cut(s)	61, 82, 499, 757, 924
SapI	GCTCTTC	2 cut(s)	549, 959
SaqAI	TTAA	5 cut(s)	114, 164, 309, 591, 1159
SatI	GCNGC	3 cut(s)	6, 273, 1155
Sau3AI	GATC	9 cut(s)	76, 207, 457, 840, 864, 1000, 1062, 1078, 1144
Sau96I	GGNCC	1 cut(s)	894
SchI	GAGTC	2 cut(s)	332, 566
SduI	GDGCHC	4 cut(s)	780, 799, 954, 981
SfaNI	GCATC	3 cut(s)	109, 148, 794
SfcI	CTRYAG	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	894
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	3 cut(s)	113, 119, 380
SmoI	CTYRAG	3 cut(s)	113, 119, 380
Sse9I	AATT	4 cut(s)	64, 181, 342, 675
SsiI	CCGC	1 cut(s)	1058
SspMI	CTAG	2 cut(s)	998, 1085
TaaI	ACNGT	3 cut(s)	255, 663, 1018
TaiI	ACGT	2 cut(s)	566, 1026
TaqI	TCGA	3 cut(s)	120, 939, 1098
TasI	AATT	4 cut(s)	64, 181, 342, 675
TfiI	GAWTC	2 cut(s)	23, 584
Tru1I	TTAA	5 cut(s)	114, 164, 309, 591, 1159
Tru9I	TTAA	5 cut(s)	114, 164, 309, 591, 1159
TscAI	CASTG	2 cut(s)	196, 813
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	3 cut(s)	5, 272, 1154
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	4 cut(s)	118, 175, 351, 977
TspGWI	ACGGA	2 cut(s)	500, 756
TspRI	CASTG	2 cut(s)	196, 813
Van91I	CCANNNNNTGG	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	113
VneI	GTGCAC	2 cut(s)	776, 977
VpaK11BI	GGWCC	1 cut(s)	894
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	2 cut(s)	998, 1085
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.