Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001911.1

Orthogroup ID

OG0009252

Physical Location & Seq

Genomic Coordinates Reverse (-)

166288 .. 172334

Gene Structure 6047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001911.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atggccgctctgcaatacctagaatcttcgcgcaacgcgcacccggagctcgccgagtggtacaattcgctggcagatctgtaccagaagaagctatggcaccagctcactctcaagctcgagcagtttgttgctctcgccgtgtttcaggctggcgatgctctgatacagttatatcacaatttcatcacagacttcgagactaaaatcaaccttctgaagcttgcacactttgcagttattgtctctcgtcagtatccagagaaagaagctgctatcagttaccttgaaggggtgattgagaagcttcaggccactagagagcaacggatagaggagccaatcctttacatcaaaatgcaaatagcaatattcaaacttgagcaacaagaccagaaggagtgcaaaaagcttctagaagatggaaagagcacactggacagtatgactgacattgatccatctgtttatgccagttattattgggtttcatctcaatactataagttccgccaggaatttgctgagttctacaaaagcgctcttctttatctagcatacacatcagtggagtctctctcagattcatttaagctggatttggcatttgatttgtccctttctgcgctcctgggagataacatctacaactttggagagctacttgcccatcctattattaagagtcttctagggactaaggtagagtggctttactatattcttcaagcattcaactctggtgatttaggatgttatcaagagttatgccgtgtgcacaatgctgctctgagtgctcaaccggcattagttgagaacgagaagaagcttttggagaagattaacattttgtgcttgatggaaattatcttcagccggccatctgaagatcgaactatacctttgagtatcattgcagagcgtacaaaactttcgatcgaggatgtagagcatcttcttgtgaagagcctttctctgagcttgaacttgagcttgttatttacagccctagaatgtgtgttggagggaagaccacttcaacaggatgacttattagttagcgatgacaccactgtcagagctcagaaacatggatgcaatgctcacaatgctctagctagtttcaaaggtgatgatgatttcgagcagagtacatattactctacggacttcgacatgagtgatggttggaatgatgagatacatccacactcggagcagagttatgtctccgatgcgacgccatggttctggcagaggtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030163 GO:0032991 GO:0034622 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

421

Amino Acids

48.44

Weight (kDa)

4.84

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19006 AT4G19006 AT5G45620 AT5G45620
fragaria_vesca	FvH4_5g23350 FvH4_5g23350 FvH4_5g23350
malus_domestica	MD06G1024700.v1.1 MD16G1281300.v1.1
prunus_persica	Prupe.5G025900_v2.0.a1
pyrus_communis	pycom06g02000 pycom16g25120
rosa_chinensis	RchiOBHm_Chr7g0212291
rosa_laevigata	RLG00000002897
rosa_multiflora	Rmu_sc0001911.1_g000049
rosa_roxburghii	Rroxscaffold_3G00246920
rosa_rugosa	Rorug07G0133400
rosa_samantha	Rh7AG266000 Rh7BG260100 Rh7CG282900 Rh7DG272900
rosa_wichuraiana	Rw7G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1073
AccB1I	GGYRCC	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	8
AccII	CGCG	2 cut(s)	31, 38
AciI	CCGC	2 cut(s)	6, 511
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	2 cut(s)	3, 878
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	4 cut(s)	239, 293, 856, 906
AcyI	GRCGYC	1 cut(s)	1241
AfaI	GTAC	4 cut(s)	62, 83, 925, 1153
AfeI	AGCGCT	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	7 cut(s)	290, 376, 728, 736, 985, 1040, 1126
AjnI	CCWGG	2 cut(s)	513, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AleI	CACNNNNGTG	1 cut(s)	566
Alw21I	GWGCWC	5 cut(s)	51, 434, 780, 799, 1084
Alw26I	GTCTC	4 cut(s)	194, 250, 579, 1234
Alw44I	GTGCAC	1 cut(s)	776
AlwI	GGATC	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	119
Aor51HI	AGCGCT	1 cut(s)	541
AoxI	GGCC	3 cut(s)	3, 312, 878
ApaLI	GTGCAC	1 cut(s)	776
ApeKI	GCWGC	2 cut(s)	272, 785
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	4 cut(s)	33, 40, 542, 628
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	307, 755, 1142
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	780
BanI	GGYRCC	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	51, 1084
BarI	GAAGNNNNNNTAC	2 cut(s)	939, 971
BbsI	GAAGAC	2 cut(s)	680, 1036
Bbv12I	GWGCWC	5 cut(s)	51, 434, 780, 799, 1084
BbvI	GCAGC	2 cut(s)	259, 772
BccI	CCATC	6 cut(s)	416, 469, 678, 853, 889, 1178
BceAI	ACGGC	2 cut(s)	125, 756
BciT130I	CCWGG	2 cut(s)	515, 632
BciVI	GTATCC	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	4 cut(s)	194, 250, 579, 1234
BfaI	CTAG	8 cut(s)	20, 318, 416, 554, 692, 1010, 1115, 1119
BfoI	RGCGCY	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	3 cut(s)	6, 273, 786
BlsI	GCNGC	3 cut(s)	7, 274, 787
Bme1390I	CCNGG	3 cut(s)	44, 515, 632
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	101, 339
BmrFI	CCNGG	3 cut(s)	44, 515, 632
BmsI	GCATC	4 cut(s)	148, 961, 1085, 1225
BpiI	GAAGAC	2 cut(s)	680, 1036
BplI	GAGNNNNNCTC	4 cut(s)	563, 595, 958, 990
BpuEI	CTTGAG	3 cut(s)	98, 401, 1009
BpuMI	CCSGG	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	1241
BsaJI	CCNNGG	2 cut(s)	631, 1244
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	2 cut(s)	802, 876
Bse1I	ACTGG	2 cut(s)	441, 474
Bse3DI	GCAATG	2 cut(s)	912, 1105
BseBI	CCWGG	2 cut(s)	515, 632
BseDI	CCNNGG	2 cut(s)	631, 1244
BseGI	GGATG	6 cut(s)	670, 758, 949, 1051, 1100, 1204
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	2 cut(s)	912, 1105
BseMII	CTCAG	5 cut(s)	516, 594, 782, 968, 1097
BseNI	ACTGG	2 cut(s)	441, 474
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	780
BseXI	GCAGC	2 cut(s)	259, 772
Bsh1236I	CGCG	2 cut(s)	31, 38
Bsh1285I	CGRYCG	1 cut(s)	939
BshFI	GGCC	3 cut(s)	5, 314, 880
BshNI	GGYRCC	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	939
BsiHKAI	GWGCWC	5 cut(s)	51, 434, 780, 799, 1084
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	44, 803, 877
BslFI	GGGAC	2 cut(s)	601, 709
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	4 cut(s)	194, 250, 579, 1234
BsmFI	GGGAC	2 cut(s)	601, 709
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	3 cut(s)	5, 314, 880
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	5 cut(s)	51, 434, 780, 799, 1084
Bsp143I	GATC	4 cut(s)	76, 457, 889, 936
Bsp19I	CCATGG	1 cut(s)	1244
BspACI	CCGC	2 cut(s)	6, 511
BspANI	GGCC	3 cut(s)	5, 314, 880
BspCNI	CTCAG	5 cut(s)	517, 593, 783, 969, 1096
BspFNI	CGCG	2 cut(s)	31, 38
BspLI	GGNNCC	2 cut(s)	101, 339
BspPI	GGATC	1 cut(s)	452
BspQI	GCTCTTC	2 cut(s)	549, 959
BspT107I	GGYRCC	1 cut(s)	99
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	912, 1105
BsrFI	RCCGGY	2 cut(s)	802, 876
BsrI	ACTGG	2 cut(s)	441, 474
BssAI	RCCGGY	2 cut(s)	802, 876
BssECI	CCNNGG	2 cut(s)	631, 1244
BssMI	GATC	4 cut(s)	76, 457, 889, 936
BssNI	GRCGYC	1 cut(s)	1241
BssT1I	CCWWGG	1 cut(s)	1244
Bst2UI	CCWGG	2 cut(s)	515, 632
Bst4CI	ACNGT	3 cut(s)	171, 443, 1075
Bst6I	CTCTTC	2 cut(s)	549, 959
BstACI	GRCGYC	1 cut(s)	1241
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	5 cut(s)	51, 72, 154, 225, 878
BstDEI	CTNAG	6 cut(s)	525, 580, 699, 791, 977, 1083
BstDSI	CCRYGG	1 cut(s)	1244
BstF5I	GGATG	6 cut(s)	670, 758, 949, 1051, 1100, 1204
BstFNI	CGCG	2 cut(s)	31, 38
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	4 cut(s)	33, 40, 542, 628
BstKTI	GATC	4 cut(s)	79, 460, 892, 939
BstMAI	GTCTC	4 cut(s)	194, 250, 579, 1234
BstMBI	GATC	4 cut(s)	76, 457, 889, 936
BstMCI	CGRYCG	1 cut(s)	939
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1109
BstNI	CCWGG	2 cut(s)	515, 632
BstSCI	CCNGG	3 cut(s)	42, 513, 630
BstSLI	GKGCMC	1 cut(s)	780
BstUI	CGCG	2 cut(s)	31, 38
BstV1I	GCAGC	2 cut(s)	259, 772
BstV2I	GAAGAC	2 cut(s)	680, 1036
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	1251
BstYI	RGATCY	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	5, 314, 880
BtgI	CCRYGG	1 cut(s)	1244
BtgZI	GCGATG	2 cut(s)	171, 1077
BtsCI	GGATG	6 cut(s)	670, 758, 949, 1051, 1100, 1204
BtsIMutI	CAGTG	3 cut(s)	434, 573, 1071
Cac8I	GCNNGC	5 cut(s)	51, 72, 154, 225, 878
CfoI	GCGC	4 cut(s)	33, 40, 542, 628
Cfr10I	RCCGGY	2 cut(s)	802, 876
CseI	GACGC	1 cut(s)	1249
Csp6I	GTAC	4 cut(s)	61, 82, 924, 1152
CviAII	CATG	3 cut(s)	1091, 1177, 1245
CviQI	GTAC	4 cut(s)	61, 82, 924, 1152
DdeI	CTNAG	6 cut(s)	525, 580, 699, 791, 977, 1083
DpnI	GATC	4 cut(s)	78, 459, 891, 938
DpnII	GATC	4 cut(s)	76, 457, 889, 936
DrdI	GACNNNNNNGTC	1 cut(s)	1073
DseDI	GACNNNNNNGTC	1 cut(s)	1073
EaeI	YGGCCR	2 cut(s)	3, 878
Eam1104I	CTCTTC	2 cut(s)	549, 959
EarI	CTCTTC	2 cut(s)	549, 959
EciI	GGCGGA	1 cut(s)	500
Ecl136II	GAGCTC	2 cut(s)	49, 1082
Eco130I	CCWWGG	1 cut(s)	1244
Eco24I	GRGCYC	2 cut(s)	51, 1084
Eco47III	AGCGCT	1 cut(s)	541
Eco53kI	GAGCTC	2 cut(s)	49, 1082
Eco57I	CTGAAG	4 cut(s)	239, 293, 856, 906
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	2 cut(s)	49, 1082
EcoRII	CCWGG	2 cut(s)	513, 630
EcoT14I	CCWWGG	1 cut(s)	1244
EcoT38I	GRGCYC	2 cut(s)	51, 1084
ErhI	CCWWGG	1 cut(s)	1244
FaeI	CATG	3 cut(s)	1094, 1180, 1248
FaqI	GGGAC	2 cut(s)	601, 709
FatI	CATG	3 cut(s)	1090, 1176, 1244
Fnu4HI	GCNGC	3 cut(s)	6, 273, 786
FokI	GGATG	6 cut(s)	657, 765, 956, 1058, 1107, 1191
FriOI	GRGCYC	2 cut(s)	51, 1084
Fsp4HI	GCNGC	3 cut(s)	6, 273, 786
FspBI	CTAG	8 cut(s)	20, 318, 416, 554, 692, 1010, 1115, 1119
GlaI	GCGC	4 cut(s)	32, 39, 541, 627
GluI	GCNGC	3 cut(s)	6, 273, 786
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	5, 314, 880
HapII	CCGG	3 cut(s)	44, 803, 877
HgaI	GACGC	1 cut(s)	1249
HhaI	GCGC	4 cut(s)	33, 40, 542, 628
Hin1I	GRCGYC	1 cut(s)	1241
Hin1II	CATG	3 cut(s)	1094, 1180, 1248
Hin6I	GCGC	4 cut(s)	31, 38, 540, 626
HinP1I	GCGC	4 cut(s)	31, 38, 540, 626
HindIII	AAGCTT	4 cut(s)	221, 305, 410, 827
HinfI	GANTC	4 cut(s)	23, 572, 584, 685
HpaII	CCGG	3 cut(s)	44, 803, 877
HphI	GGTGA	3 cut(s)	307, 755, 1142
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188III	TCNNGA	4 cut(s)	199, 260, 416, 761
Hpy8I	GTNNAC	1 cut(s)	778
Hpy99I	CGWCG	1 cut(s)	1243
HpyAV	CCTTC	3 cut(s)	224, 284, 391
HpyCH4III	ACNGT	3 cut(s)	171, 443, 1075
HpyCH4V	TGCA	8 cut(s)	13, 227, 236, 361, 405, 778, 917, 1098
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1109
HpyF3I	CTNAG	6 cut(s)	525, 580, 699, 791, 977, 1083
Hsp92I	GRCGYC	1 cut(s)	1241
Hsp92II	CATG	3 cut(s)	1094, 1180, 1248
HspAI	GCGC	4 cut(s)	31, 38, 540, 626
KroI	GCCGGC	1 cut(s)	876
KroNI	GCCGGC	1 cut(s)	878
Kzo9I	GATC	4 cut(s)	76, 457, 889, 936
LguI	GCTCTTC	2 cut(s)	549, 959
LmnI	GCTCC	4 cut(s)	46, 337, 633, 1216
Lsp1109I	GCAGC	2 cut(s)	259, 772
LweI	GCATC	4 cut(s)	148, 961, 1085, 1225
MaeI	CTAG	8 cut(s)	20, 318, 416, 554, 692, 1010, 1115, 1119
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	78, 459, 891, 938
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	4 cut(s)	76, 457, 889, 936
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	5 cut(s)	51, 434, 780, 799, 1084
MluCI	AATT	4 cut(s)	64, 181, 518, 864
MlyI	GAGTC	2 cut(s)	581, 694
MmeI	TCCRAC	2 cut(s)	1002, 1169
MnlI	CCTC	4 cut(s)	328, 934, 1018, 1251
MroNI	GCCGGC	1 cut(s)	876
MseI	TTAA	3 cut(s)	591, 681, 843
MslI	CAYNNNNRTG	2 cut(s)	356, 566
MspI	CCGG	3 cut(s)	44, 803, 877
MspR9I	CCNGG	3 cut(s)	44, 515, 632
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	2 cut(s)	515, 632
MvnI	CGCG	2 cut(s)	31, 38
MwoI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1109
NaeI	GCCGGC	1 cut(s)	878
NciI	CCSGG	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	1244
NdeII	GATC	4 cut(s)	76, 457, 889, 936
NgoMIV	GCCGGC	1 cut(s)	876
NlaIII	CATG	3 cut(s)	1094, 1180, 1248
NlaIV	GGNNCC	2 cut(s)	101, 339
NmeAIII	GCCGAG	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	119
PciSI	GCTCTTC	2 cut(s)	549, 959
PctI	GAATGC	1 cut(s)	731
PdiI	GCCGGC	1 cut(s)	878
PfeI	GAWTC	2 cut(s)	23, 584
PkrI	GCNGC	3 cut(s)	7, 274, 787
Ple19I	CGATCG	1 cut(s)	939
PleI	GAGTC	2 cut(s)	580, 693
PpsI	GAGTC	2 cut(s)	580, 693
Psp124BI	GAGCTC	2 cut(s)	51, 1084
Psp6I	CCWGG	2 cut(s)	513, 630
PspGI	CCWGG	2 cut(s)	513, 630
PspN4I	GGNNCC	2 cut(s)	101, 339
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	939
RsaI	GTAC	4 cut(s)	62, 83, 925, 1153
RsaNI	GTAC	4 cut(s)	61, 82, 924, 1152
RseI	CAYNNNNRTG	2 cut(s)	356, 566
SacI	GAGCTC	2 cut(s)	51, 1084
SapI	GCTCTTC	2 cut(s)	549, 959
SaqAI	TTAA	3 cut(s)	591, 681, 843
SatI	GCNGC	3 cut(s)	6, 273, 786
Sau3AI	GATC	4 cut(s)	76, 457, 889, 936
SchI	GAGTC	2 cut(s)	581, 694
ScrFI	CCNGG	3 cut(s)	44, 515, 632
SduI	GDGCHC	5 cut(s)	51, 434, 780, 799, 1084
SfaNI	GCATC	4 cut(s)	148, 961, 1085, 1225
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	356, 566
SmlI	CTYRAG	4 cut(s)	113, 119, 380, 988
SmoI	CTYRAG	4 cut(s)	113, 119, 380, 988
Sse9I	AATT	4 cut(s)	64, 181, 518, 864
SsiI	CCGC	2 cut(s)	6, 511
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	8 cut(s)	20, 318, 416, 554, 692, 1010, 1115, 1119
SstI	GAGCTC	2 cut(s)	51, 1084
StyD4I	CCNGG	3 cut(s)	42, 513, 630
StyI	CCWWGG	1 cut(s)	1244
TaaI	ACNGT	3 cut(s)	171, 443, 1075
TaqI	TCGA	7 cut(s)	120, 198, 892, 935, 939, 1143, 1173
TasI	AATT	4 cut(s)	64, 181, 518, 864
TatI	WGTACW	1 cut(s)	1151
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	23, 584
Tru1I	TTAA	3 cut(s)	591, 681, 843
Tru9I	TTAA	3 cut(s)	591, 681, 843
TscAI	CASTG	3 cut(s)	441, 573, 1078
TseI	GCWGC	2 cut(s)	272, 785
TspDTI	ATGAA	3 cut(s)	175, 480, 576
TspGWI	ACGGA	2 cut(s)	343, 1181
TspRI	CASTG	3 cut(s)	441, 573, 1078
VneI	GTGCAC	1 cut(s)	776
XapI	RAATTY	1 cut(s)	518
XbaI	TCTAGA	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	8 cut(s)	20, 318, 416, 554, 692, 1010, 1115, 1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.