pycom06g02000

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
2458643 .. 2463872
5230 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02000.2

Sequence Viewer

Length: 1335 bp
ATGGCCGCGCTGCAGTACCTGGAGTCGCTGCGCAACGCGCATCCGGAGCTCGCCGAATGGTACAATTCACTTGCAGATCTGTACCAAAGGAAGCTATGGCACCAGCTCACTCTCAAGCTCGAGCAGTTTGTTGCTCTCTCCGTCTTTCAGGCTGGTGATGCTCTGATACAGTTGTACCACAATTTCATCACCGATTTTGAGACTAAAATCAACCTTCTCAAGCTTGCACACTTTGCAGTCATTGTTTCTCGACAGTACCCAGAGAAGGAAGCTGCTATCAGTTACCTAGAAGGGGTGATTGAGAAGCTTCAAGCTACTAGAGAGCAACGCATAGAGGAACCAATCCTTTACATTAAGATGCAAATAGCAATATTCCAACTTGAACAACAAGACCAAAAAGGGTGCAAAAAGCTTCTAGAAGATGGAAAGACTACACTTGACAGTATGACTGATATTGATCCATCTGTGTATGCTAGCTATTATTGGGTGTCATCTCAATATCATAAGTTCCGTCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTTTATCTGGCATACACATCAGTGGAGTCTCTCTCAGAATCATTCAAGCTGGATCTAGCATTTGATTTGTCCCTTTCTGCGCTCCTGGGAGATAACATCTACAACTTTGGAGAGCTGCTTGCGCATCCTATTATTAAGTCTCTTCTTGGGACAAAGGTAGAGTGGCTTTACTATATTCTTCAAGCGTTCAACTCTGGTGATTTATTTCGGTATCAAGAGTTATGCCGTGTGCACAATGCTGCTCTGAGAGCACAACCGGCATTAGTTGATAATGAGAAGAAGCTTTTGGAGAAGATTAACATTCTGTGCTTGATGGAAATTATCTTCAGCCGGCCAGCTGAAGATCGAACTATACCATTGAGTATCATTGCAGAGCGTACCAAACTTTCGGTCGAGGATGTGGAGCATCTTCTTGTGAAGAGCCTTTCTGTTCATCTGATCGAGGGAATAATCGATCAGGTCGAGGAGACGGTGCATGTGTCCTGGGTGCAGCCAAGAGTTTTGGGGATTCTACAGGTCAAATCATTGCGTGATAGGTTGGACAGTTGGTTGGACAAAGTCCATACTGCTTTGTTATCTATCGAGGCGGAAACACCTGATTTGGTTGCATCGCGGCCTGGAAACACAGATCTTCGGTTGATTGAACACCTTGGGCCTACTTTTTTTTATGCTGCTTTTCTTGTTGGTGATGCTTTTTTTGTTGAATCATTTCCCTGGAAGGAGCAGCCTTGTGTACTGCACTTGGGAGTAATATTCCATTTTATAGTGGCATGCCTAGAGACATGGTGA

Protein Analysis

445

Amino Acids

51.15

Weight (kDa)

5.26

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009252)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 32, 669
AccB1I GGYRCC 1 cut(s) 99
AccII CGCG 3 cut(s) 8, 38, 1159
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 3 cut(s) 6, 1133, 1159
AclWI GGATC 2 cut(s) 452, 606
AcoI YGGCCR 2 cut(s) 3, 878
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 856, 906
AfaI GTAC 7 cut(s) 17, 62, 83, 176, 257, 925, 1281
AfiI CCNNNNNNNGG 2 cut(s) 265, 292
AgsI TTSAA 7 cut(s) 311, 383, 592, 728, 736, 1190, 1250
AjnI CCWGG 5 cut(s) 18, 630, 1028, 1162, 1259
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AleI CACNNNNGTG 1 cut(s) 566
Alw21I GWGCWC 3 cut(s) 51, 780, 799
Alw26I GTCTC 5 cut(s) 194, 579, 690, 1007, 1319
Alw44I GTGCAC 1 cut(s) 776
AlwI GGATC 2 cut(s) 452, 606
AlwNI CAGNNNCTG 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 4 cut(s) 3, 878, 1160, 1199
ApaLI GTGCAC 1 cut(s) 776
ApeKI GCWGC 8 cut(s) 10, 28, 272, 661, 785, 1036, 1217, 1270
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 921, 953
Asp700I GAANNNNTTC 1 cut(s) 1254
AspLEI GCGC 5 cut(s) 10, 33, 40, 628, 670
AspS9I GGNCC 1 cut(s) 1199
AsuHPI GGTGA 5 cut(s) 167, 181, 307, 755, 1244
AsuNHI GCTAGC 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 119
BaeGI GKGCMC 2 cut(s) 544, 780
BaeI ACNNNNGTAYC 4 cut(s) 158, 158, 191, 191
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 3 cut(s) 51, 780, 799
BbvI GCAGC 7 cut(s) 15, 259, 648, 772, 1048, 1204, 1282
BccI CCATC 3 cut(s) 416, 469, 853
BceAI ACGGC 1 cut(s) 756
BciT130I CCWGG 5 cut(s) 20, 632, 1030, 1164, 1261
BcoDI GTCTC 5 cut(s) 194, 579, 690, 1007, 1319
BfaI CTAG 6 cut(s) 287, 318, 416, 474, 602, 1322
BfmI CTRYAG 2 cut(s) 11, 1058
BglII AGATCT 2 cut(s) 76, 1174
Bme1390I CCNGG 5 cut(s) 20, 632, 1030, 1164, 1261
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 1199
BmiI GGNNCC 2 cut(s) 101, 339
BmrFI CCNGG 5 cut(s) 20, 632, 1030, 1164, 1261
BmsI GCATC 7 cut(s) 49, 148, 348, 679, 961, 1163, 1225
BmtI GCTAGC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 563, 595
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 98, 203
Bsa29I ATCGAT 1 cut(s) 999
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 631, 1029, 1195, 1259
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 292
Bse118I RCCGGY 2 cut(s) 802, 876
Bse3DI GCAATG 2 cut(s) 912, 1070
Bse8I GATNNNNATC 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 5 cut(s) 20, 632, 1030, 1164, 1261
BseCI ATCGAT 1 cut(s) 999
BseDI CCNNGG 4 cut(s) 631, 1029, 1195, 1259
BseGI GGATG 3 cut(s) 40, 670, 949
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 265, 292
BseMI GCAATG 2 cut(s) 912, 1070
BseMII CTCAG 3 cut(s) 516, 594, 782
BseRI GAGGAG 1 cut(s) 1025
BseSI GKGCMC 2 cut(s) 544, 780
BseXI GCAGC 7 cut(s) 15, 259, 648, 772, 1048, 1204, 1282
BsgI GTGCAG 2 cut(s) 1055, 1268
Bsh1236I CGCG 3 cut(s) 8, 38, 1159
Bsh1285I CGRYCG 1 cut(s) 939
BshFI GGCC 4 cut(s) 5, 880, 1162, 1201
BshNI GGYRCC 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 999
BsiEI CGRYCG 1 cut(s) 939
BsiHKAI GWGCWC 3 cut(s) 51, 780, 799
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 44, 803, 877
BslFI GGGAC 2 cut(s) 601, 709
BslI CCNNNNNNNGG 2 cut(s) 265, 292
BsmAI GTCTC 5 cut(s) 194, 579, 690, 1007, 1319
BsmBI CGTCTC 1 cut(s) 1007
BsmFI GGGAC 2 cut(s) 601, 709
BsnI GGCC 4 cut(s) 5, 880, 1162, 1201
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 4 cut(s) 51, 544, 780, 799
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 7 cut(s) 76, 457, 598, 889, 984, 1000, 1174
BspACI CCGC 3 cut(s) 6, 1133, 1159
BspANI GGCC 4 cut(s) 5, 880, 1162, 1201
BspCNI CTCAG 3 cut(s) 517, 593, 783
BspDI ATCGAT 1 cut(s) 999
BspEI TCCGGA 1 cut(s) 43
BspFNI CGCG 3 cut(s) 8, 38, 1159
BspLI GGNNCC 2 cut(s) 101, 339
BspMAI CTGCAG 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 452, 606
BspQI GCTCTTC 1 cut(s) 959
BspT107I GGYRCC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 912, 1070
BsrFI RCCGGY 2 cut(s) 802, 876
BssAI RCCGGY 2 cut(s) 802, 876
BssECI CCNNGG 4 cut(s) 631, 1029, 1195, 1259
BssMI GATC 7 cut(s) 76, 457, 598, 889, 984, 1000, 1174
BssT1I CCWWGG 1 cut(s) 1195
Bst2UI CCWGG 5 cut(s) 20, 632, 1030, 1164, 1261
Bst4CI ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
Bst6I CTCTTC 2 cut(s) 693, 959
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 7 cut(s) 51, 225, 475, 666, 878, 882, 1318
BstDEI CTNAG 3 cut(s) 525, 580, 791
BstF5I GGATG 3 cut(s) 40, 670, 949
BstFNI CGCG 3 cut(s) 8, 38, 1159
BstHHI GCGC 5 cut(s) 10, 33, 40, 628, 670
BstKTI GATC 7 cut(s) 79, 460, 601, 892, 987, 1003, 1177
BstMAI GTCTC 5 cut(s) 194, 579, 690, 1007, 1319
BstMBI GATC 7 cut(s) 76, 457, 598, 889, 984, 1000, 1174
BstMCI CGRYCG 1 cut(s) 939
BstMWI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 667, 794, 803
BstNI CCWGG 5 cut(s) 20, 632, 1030, 1164, 1261
BstNSI RCATGY 2 cut(s) 1025, 1320
BstSCI CCNGG 5 cut(s) 18, 630, 1028, 1162, 1259
BstSFI CTRYAG 2 cut(s) 11, 1058
BstSLI GKGCMC 2 cut(s) 544, 780
BstUI CGCG 3 cut(s) 8, 38, 1159
BstV1I GCAGC 7 cut(s) 15, 259, 648, 772, 1048, 1204, 1282
BstX2I RGATCY 3 cut(s) 76, 598, 1174
BstYI RGATCY 3 cut(s) 76, 598, 1174
Bsu15I ATCGAT 1 cut(s) 999
BsuRI GGCC 4 cut(s) 5, 880, 1162, 1201
BsuTUI ATCGAT 1 cut(s) 999
BtgZI GCGATG 1 cut(s) 1140
BtsCI GGATG 3 cut(s) 40, 670, 949
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 7 cut(s) 51, 225, 475, 666, 878, 882, 1318
CaiI CAGNNNCTG 1 cut(s) 19
CfoI GCGC 5 cut(s) 10, 33, 40, 628, 670
Cfr10I RCCGGY 2 cut(s) 802, 876
Cfr13I GGNCC 1 cut(s) 1199
ClaI ATCGAT 1 cut(s) 999
Csp6I GTAC 7 cut(s) 16, 61, 82, 175, 256, 924, 1280
CviAII CATG 3 cut(s) 1022, 1317, 1329
CviQI GTAC 7 cut(s) 16, 61, 82, 175, 256, 924, 1280
DdeI CTNAG 3 cut(s) 525, 580, 791
DpnI GATC 7 cut(s) 78, 459, 600, 891, 986, 1002, 1176
DpnII GATC 7 cut(s) 76, 457, 598, 889, 984, 1000, 1174
EaeI YGGCCR 2 cut(s) 3, 878
Eam1104I CTCTTC 2 cut(s) 693, 959
EarI CTCTTC 2 cut(s) 693, 959
EciI GGCGGA 1 cut(s) 1148
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 1195
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 856, 906
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 5 cut(s) 18, 630, 1028, 1162, 1259
EcoT14I CCWWGG 1 cut(s) 1195
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 1195
Esp3I CGTCTC 1 cut(s) 1007
FaeI CATG 3 cut(s) 1025, 1320, 1332
FaqI GGGAC 2 cut(s) 601, 709
FatI CATG 3 cut(s) 1021, 1316, 1328
FokI GGATG 3 cut(s) 27, 657, 956
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 6 cut(s) 287, 318, 416, 474, 602, 1322
FspI TGCGCA 2 cut(s) 32, 669
GlaI GCGC 5 cut(s) 9, 32, 39, 627, 669
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 4 cut(s) 5, 880, 1162, 1201
HapII CCGG 3 cut(s) 44, 803, 877
HhaI GCGC 5 cut(s) 10, 33, 40, 628, 670
Hin1II CATG 3 cut(s) 1025, 1320, 1332
Hin6I GCGC 5 cut(s) 8, 31, 38, 626, 668
HinP1I GCGC 5 cut(s) 8, 31, 38, 626, 668
HindIII AAGCTT 4 cut(s) 221, 305, 410, 827
HinfI GANTC 5 cut(s) 23, 572, 584, 1054, 1250
HpaII CCGG 3 cut(s) 44, 803, 877
HphI GGTGA 5 cut(s) 167, 181, 307, 755, 1244
Hpy166II GTNNAC 2 cut(s) 778, 1280
Hpy188I TCNGA 4 cut(s) 165, 583, 792, 984
Hpy188III TCNNGA 5 cut(s) 44, 249, 416, 515, 761
Hpy8I GTNNAC 2 cut(s) 778, 1280
HpyAV CCTTC 5 cut(s) 224, 259, 284, 554, 1258
HpyCH4III ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 667, 794, 803
HpyF3I CTNAG 3 cut(s) 525, 580, 791
Hsp92II CATG 3 cut(s) 1025, 1320, 1332
HspAI GCGC 5 cut(s) 8, 31, 38, 626, 668
Kpn2I TCCGGA 1 cut(s) 43
KroI GCCGGC 1 cut(s) 876
KroNI GCCGGC 1 cut(s) 878
Kzo9I GATC 7 cut(s) 76, 457, 598, 889, 984, 1000, 1174
LguI GCTCTTC 1 cut(s) 959
LmnI GCTCC 4 cut(s) 46, 633, 949, 1267
Lsp1109I GCAGC 7 cut(s) 15, 259, 648, 772, 1048, 1204, 1282
LweI GCATC 7 cut(s) 49, 148, 348, 679, 961, 1163, 1225
MaeI CTAG 6 cut(s) 287, 318, 416, 474, 602, 1322
MaeIII GTNAC 1 cut(s) 281
MalI GATC 7 cut(s) 78, 459, 600, 891, 986, 1002, 1176
MboI GATC 7 cut(s) 76, 457, 598, 889, 984, 1000, 1174
MflI RGATCY 3 cut(s) 76, 598, 1174
MhlI GDGCHC 4 cut(s) 51, 544, 780, 799
MluCI AATT 4 cut(s) 64, 181, 518, 864
MlyI GAGTC 2 cut(s) 32, 581
MmeI TCCRAC 3 cut(s) 400, 1065, 1077
MnlI CCTC 5 cut(s) 328, 934, 982, 1003, 1123
MroI TCCGGA 1 cut(s) 43
MroNI GCCGGC 1 cut(s) 876
MroXI GAANNNNTTC 1 cut(s) 1254
MseI TTAA 3 cut(s) 354, 681, 843
MslI CAYNNNNRTG 2 cut(s) 356, 566
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 3 cut(s) 44, 803, 877
MspR9I CCNGG 5 cut(s) 20, 632, 1030, 1164, 1261
MvaI CCWGG 5 cut(s) 20, 632, 1030, 1164, 1261
MvnI CGCG 3 cut(s) 8, 38, 1159
MwoI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 667, 794, 803
NaeI GCCGGC 1 cut(s) 878
NdeII GATC 7 cut(s) 76, 457, 598, 889, 984, 1000, 1174
NgoMIV GCCGGC 1 cut(s) 876
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 3 cut(s) 1025, 1320, 1332
NlaIV GGNNCC 2 cut(s) 101, 339
NsbI TGCGCA 2 cut(s) 32, 669
NspI RCATGY 2 cut(s) 1025, 1320
OliI CACNNNNGTG 1 cut(s) 566
PaeI GCATGC 1 cut(s) 1320
PaeR7I CTCGAG 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 959
PcsI WCGNNNNNNNCGW 1 cut(s) 1005
PdiI GCCGGC 1 cut(s) 878
PdmI GAANNNNTTC 1 cut(s) 1254
PfeI GAWTC 3 cut(s) 584, 1054, 1250
PflFI GACNNNGTC 1 cut(s) 1103
PleI GAGTC 2 cut(s) 31, 580
PpsI GAGTC 2 cut(s) 31, 580
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 5 cut(s) 18, 630, 1028, 1162, 1259
PspGI CCWGG 5 cut(s) 18, 630, 1028, 1162, 1259
PspN4I GGNNCC 2 cut(s) 101, 339
PspPI GGNCC 1 cut(s) 1199
PspXI VCTCGAGB 1 cut(s) 119
PstI CTGCAG 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 3 cut(s) 76, 598, 1174
PsyI GACNNNGTC 1 cut(s) 1103
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 7 cut(s) 17, 62, 83, 176, 257, 925, 1281
RsaNI GTAC 7 cut(s) 16, 61, 82, 175, 256, 924, 1280
RseI CAYNNNNRTG 2 cut(s) 356, 566
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 959
SaqAI TTAA 3 cut(s) 354, 681, 843
Sau3AI GATC 7 cut(s) 76, 457, 598, 889, 984, 1000, 1174
Sau96I GGNCC 1 cut(s) 1199
SchI GAGTC 2 cut(s) 32, 581
ScrFI CCNGG 5 cut(s) 20, 632, 1030, 1164, 1261
SduI GDGCHC 4 cut(s) 51, 544, 780, 799
SfaNI GCATC 7 cut(s) 49, 148, 348, 679, 961, 1163, 1225
SfcI CTRYAG 2 cut(s) 11, 1058
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 356, 566
SmlI CTYRAG 3 cut(s) 113, 119, 218
SmoI CTYRAG 3 cut(s) 113, 119, 218
SphI GCATGC 1 cut(s) 1320
Sse9I AATT 4 cut(s) 64, 181, 518, 864
SsiI CCGC 3 cut(s) 6, 1133, 1159
SspI AATATT 2 cut(s) 372, 1299
SspMI CTAG 6 cut(s) 287, 318, 416, 474, 602, 1322
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 5 cut(s) 18, 630, 1028, 1162, 1259
StyI CCWWGG 1 cut(s) 1195
TaaI ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
TaqI TCGA 8 cut(s) 120, 250, 892, 939, 987, 999, 1008, 1128
TaqII GACCGA 1 cut(s) 925
TasI AATT 4 cut(s) 64, 181, 518, 864
TatI WGTACW 1 cut(s) 1279
TauI GCSGC 2 cut(s) 8, 1162
TfiI GAWTC 3 cut(s) 584, 1054, 1250
Tru1I TTAA 3 cut(s) 354, 681, 843
Tru9I TTAA 3 cut(s) 354, 681, 843
TscAI CASTG 1 cut(s) 573
TseI GCWGC 8 cut(s) 10, 28, 272, 661, 785, 1036, 1217, 1270
TspDTI ATGAA 2 cut(s) 175, 968
TspGWI ACGGA 2 cut(s) 130, 500
TspRI CASTG 1 cut(s) 573
Tth111I GACNNNGTC 1 cut(s) 1103
VneI GTGCAC 1 cut(s) 776
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 2 cut(s) 1025, 1320
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 6 cut(s) 287, 318, 416, 474, 602, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.