Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009252

Physical Location & Seq

Genomic Coordinates Forward (+)

2920373 .. 2927312

Gene Structure 6940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G025900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCCGCGCTGCAGTACCTGGAGTCGTTGCGCAACGCGCATCCGGAGCTCTCCGATTGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTATGGCACCAGCTCACTCTCAAGCTCGAGCAGTTTGTTGCTCTCGCCGTGTTCCAGGCTGGCGATGCTCTGATACAGTTATATCACAATTTCATCACTGATTTTGAGACTAAAATCAACCTTCTGAAGCTTGCACACTTCGCAGTAATTGTTTCTCGGCAGTATCCAGAGAAGGAAGCTGCTATCAATTACCTTGAAGGGGTGATTGAGAAGCTTCAAGCCACTAGAGAGCAACGGATAGAGGAACCAATCCTTTACATTAAGATGCAAATAGCAATATTCAAACTTGAGCAAGAAGACCAGAAAGAGTGCAAAAAACTTCTAGAAGATGGAAAGAGTACACTTGACAGTATGACTGACATCGATCCATCTGTATATGCTAGCTATTATTGGGTTTCATCTCAATACCATAAGTTCCGTCAGGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTTTATCTAGCATACACATCAGTGGAGTCTCTCTCAGAATCATTTAAGCTGGATTTGGCATTTGATTTGTCCCTTTCTGCGCTCCTGGGAGACAACATCTACAACTTTGGAGAGCTGCTTGCACATCCTATTATTAAGAGTCTTCTAGGGACAAAGGTAGAGTGGCTTTACTATATTCTTCAAGCGTTCAACTCTGGTGATTTAGTTCGTTATCAAGAATTATGTCGTGTGCATAATGCTGCTCTTAGAGCTCAACCAGCTTTAGTTGAAAATGAGAAGAAGCTTTTGGAGAAGATTAACATTCTGTGCTTGATGGAAATTATCTTCAGCCGGCCATCTGAAGATAGGACTATACCTTTGAGTATCATTGCAGAGCGTACGAAACTTTCTGTCGAGGATGTGGAGCATCTTCTTGTGAAGAGTCTTTCTGTTCATTTGATTGAGGGAATAATTGATCAAGTTGAGGAAACCGTGCATGTGTCCTGGGTGCAACCAAGAGTTTTGGGAATTCCACAGATCAAATCGTTGCGTGATAGGCTGGACGGTTGGTTGGACAAAGTGCATACAGCTTTGTTATCTATCGAGGCGGAAACACCTGATTTGGTTGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030163 GO:0032991 GO:0034622 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

387

Amino Acids

44.47

Weight (kDa)

5.2

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19006 AT4G19006 AT5G45620 AT5G45620
fragaria_vesca	FvH4_5g23350 FvH4_5g23350 FvH4_5g23350
malus_domestica	MD06G1024700.v1.1 MD16G1281300.v1.1
prunus_persica	Prupe.5G025900_v2.0.a1
pyrus_communis	pycom06g02000 pycom16g25120
rosa_chinensis	RchiOBHm_Chr7g0212291
rosa_laevigata	RLG00000002897
rosa_multiflora	Rmu_sc0001911.1_g000049
rosa_roxburghii	Rroxscaffold_3G00246920
rosa_rugosa	Rorug07G0133400
rosa_samantha	Rh7AG266000 Rh7BG260100 Rh7CG282900 Rh7DG272900
rosa_wichuraiana	Rw7G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	99
AccII	CGCG	2 cut(s)	8, 38
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	2 cut(s)	6, 1133
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	2 cut(s)	3, 878
AcsI	RAATTY	2 cut(s)	518, 1053
AcuI	CTGAAG	3 cut(s)	239, 856, 906
AfaI	GTAC	5 cut(s)	17, 62, 83, 433, 925
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	6 cut(s)	290, 311, 376, 728, 736, 815
AjnI	CCWGG	4 cut(s)	18, 147, 630, 1028
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AleI	CACNNNNGTG	1 cut(s)	566
Alw21I	GWGCWC	3 cut(s)	51, 544, 799
Alw26I	GTCTC	3 cut(s)	194, 579, 630
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	43
AoxI	GGCC	2 cut(s)	3, 878
ApeKI	GCWGC	4 cut(s)	10, 272, 661, 785
ApoI	RAATTY	2 cut(s)	518, 1053
ArsI	GACNNNNNNTTYG	2 cut(s)	886, 918
AspLEI	GCGC	4 cut(s)	10, 33, 40, 628
AsuHPI	GGTGA	2 cut(s)	307, 755
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	51, 799
BbsI	GAAGAC	2 cut(s)	396, 680
Bbv12I	GWGCWC	3 cut(s)	51, 544, 799
BbvI	GCAGC	3 cut(s)	259, 648, 772
BccI	CCATC	4 cut(s)	416, 469, 853, 889
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	4 cut(s)	20, 149, 632, 1030
BciVI	GTATCC	1 cut(s)	267
BclI	TGATCA	1 cut(s)	1000
BcoDI	GTCTC	3 cut(s)	194, 579, 630
BfaI	CTAG	5 cut(s)	318, 416, 474, 554, 692
BfmI	CTRYAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	5 cut(s)	6, 11, 273, 662, 786
BlsI	GCNGC	5 cut(s)	7, 12, 274, 663, 787
Bme1390I	CCNGG	4 cut(s)	20, 149, 632, 1030
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	101, 339
BmrFI	CCNGG	4 cut(s)	20, 149, 632, 1030
BmsI	GCATC	4 cut(s)	49, 148, 348, 961
BmtI	GCTAGC	1 cut(s)	477
BpiI	GAAGAC	2 cut(s)	396, 680
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	2 cut(s)	98, 401
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	631, 1029
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	876
Bse3DI	GCAATG	1 cut(s)	912
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	4 cut(s)	20, 149, 632, 1030
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	631, 1029
BseGI	GGATG	3 cut(s)	40, 670, 949
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	2 cut(s)	516, 594
BseXI	GCAGC	3 cut(s)	259, 648, 772
Bsh1236I	CGCG	2 cut(s)	8, 38
BshFI	GGCC	2 cut(s)	5, 880
BshNI	GGYRCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	3 cut(s)	51, 544, 799
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	44, 877
BsiWI	CGTACG	1 cut(s)	923
BslFI	GGGAC	2 cut(s)	601, 709
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	3 cut(s)	194, 579, 630
BsmFI	GGGAC	2 cut(s)	601, 709
BsnI	GGCC	2 cut(s)	5, 880
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	51, 544, 799
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	76, 457, 1000, 1062
BspACI	CCGC	2 cut(s)	6, 1133
BspANI	GGCC	2 cut(s)	5, 880
BspCNI	CTCAG	2 cut(s)	517, 593
BspDI	ATCGAT	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	43
BspFNI	CGCG	2 cut(s)	8, 38
BspHI	TCATGA	1 cut(s)	1157
BspLI	GGNNCC	2 cut(s)	101, 339
BspMAI	CTGCAG	1 cut(s)	15
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	452
BspQI	GCTCTTC	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	912
BsrFI	RCCGGY	1 cut(s)	876
BssAI	RCCGGY	1 cut(s)	876
BssECI	CCNNGG	2 cut(s)	631, 1029
BssMI	GATC	4 cut(s)	76, 457, 1000, 1062
Bst2UI	CCWGG	4 cut(s)	20, 149, 632, 1030
Bst4CI	ACNGT	4 cut(s)	171, 443, 1018, 1091
Bst6I	CTCTTC	2 cut(s)	549, 959
BstC8I	GCNNGC	6 cut(s)	72, 154, 225, 475, 666, 878
BstDEI	CTNAG	3 cut(s)	525, 580, 791
BstF5I	GGATG	3 cut(s)	40, 670, 949
BstFNI	CGCG	2 cut(s)	8, 38
BstHHI	GCGC	4 cut(s)	10, 33, 40, 628
BstKTI	GATC	4 cut(s)	79, 460, 1003, 1065
BstMAI	GTCTC	3 cut(s)	194, 579, 630
BstMBI	GATC	4 cut(s)	76, 457, 1000, 1062
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1081
BstNI	CCWGG	4 cut(s)	20, 149, 632, 1030
BstNSI	RCATGY	1 cut(s)	1025
BstSCI	CCNGG	4 cut(s)	18, 147, 630, 1028
BstSFI	CTRYAG	1 cut(s)	11
BstUI	CGCG	2 cut(s)	8, 38
BstV1I	GCAGC	3 cut(s)	259, 648, 772
BstV2I	GAAGAC	2 cut(s)	396, 680
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	5, 880
BsuTUI	ATCGAT	1 cut(s)	456
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	40, 670, 949
BtsIMutI	CAGTG	2 cut(s)	189, 573
Cac8I	GCNNGC	6 cut(s)	72, 154, 225, 475, 666, 878
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	1157
CfoI	GCGC	4 cut(s)	10, 33, 40, 628
Cfr10I	RCCGGY	1 cut(s)	876
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	5 cut(s)	16, 61, 82, 432, 924
CviAII	CATG	2 cut(s)	1022, 1158
CviQI	GTAC	5 cut(s)	16, 61, 82, 432, 924
DdeI	CTNAG	3 cut(s)	525, 580, 791
DpnI	GATC	4 cut(s)	78, 459, 1002, 1064
DpnII	GATC	4 cut(s)	76, 457, 1000, 1062
EaeI	YGGCCR	2 cut(s)	3, 878
Eam1104I	CTCTTC	2 cut(s)	549, 959
EarI	CTCTTC	2 cut(s)	549, 959
EciI	GGCGGA	1 cut(s)	1148
Ecl136II	GAGCTC	2 cut(s)	49, 797
Eco24I	GRGCYC	2 cut(s)	51, 799
Eco53kI	GAGCTC	2 cut(s)	49, 797
Eco57I	CTGAAG	3 cut(s)	239, 856, 906
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	2 cut(s)	49, 797
EcoRI	GAATTC	1 cut(s)	1053
EcoRII	CCWGG	4 cut(s)	18, 147, 630, 1028
EcoT38I	GRGCYC	2 cut(s)	51, 799
FaeI	CATG	2 cut(s)	1025, 1161
FaqI	GGGAC	2 cut(s)	601, 709
FatI	CATG	2 cut(s)	1021, 1157
FbaI	TGATCA	1 cut(s)	1000
Fnu4HI	GCNGC	5 cut(s)	6, 11, 273, 662, 786
FokI	GGATG	3 cut(s)	27, 657, 956
FriOI	GRGCYC	2 cut(s)	51, 799
Fsp4HI	GCNGC	5 cut(s)	6, 11, 273, 662, 786
FspBI	CTAG	5 cut(s)	318, 416, 474, 554, 692
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	4 cut(s)	9, 32, 39, 627
GluI	GCNGC	5 cut(s)	6, 11, 273, 662, 786
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	5, 880
HapII	CCGG	2 cut(s)	44, 877
HhaI	GCGC	4 cut(s)	10, 33, 40, 628
Hin1II	CATG	2 cut(s)	1025, 1161
Hin6I	GCGC	4 cut(s)	8, 31, 38, 626
HinP1I	GCGC	4 cut(s)	8, 31, 38, 626
HindIII	AAGCTT	3 cut(s)	221, 305, 827
HinfI	GANTC	5 cut(s)	23, 572, 584, 685, 967
HpaII	CCGG	2 cut(s)	44, 877
HphI	GGTGA	2 cut(s)	307, 755
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	5 cut(s)	55, 165, 219, 583, 886
Hpy188III	TCNNGA	6 cut(s)	44, 260, 416, 515, 761, 1158
Hpy8I	GTNNAC	1 cut(s)	434
HpyAV	CCTTC	3 cut(s)	224, 259, 284
HpyCH4III	ACNGT	4 cut(s)	171, 443, 1018, 1091
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1081
HpyF3I	CTNAG	3 cut(s)	525, 580, 791
Hsp92II	CATG	2 cut(s)	1025, 1161
HspAI	GCGC	4 cut(s)	8, 31, 38, 626
Kpn2I	TCCGGA	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	876
KroNI	GCCGGC	1 cut(s)	878
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	4 cut(s)	76, 457, 1000, 1062
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	3 cut(s)	46, 633, 949
Lsp1109I	GCAGC	3 cut(s)	259, 648, 772
LweI	GCATC	4 cut(s)	49, 148, 348, 961
MaeI	CTAG	5 cut(s)	318, 416, 474, 554, 692
MalI	GATC	4 cut(s)	78, 459, 1002, 1064
MboI	GATC	4 cut(s)	76, 457, 1000, 1062
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	3 cut(s)	51, 544, 799
MluCI	AATT	9 cut(s)	64, 181, 240, 280, 518, 764, 864, 996, 1053
MlyI	GAGTC	4 cut(s)	32, 581, 694, 976
MmeI	TCCRAC	1 cut(s)	1077
MnlI	CCTC	5 cut(s)	328, 934, 982, 1003, 1123
MroI	TCCGGA	1 cut(s)	43
MroNI	GCCGGC	1 cut(s)	876
MseI	TTAA	4 cut(s)	354, 591, 681, 843
MslI	CAYNNNNRTG	2 cut(s)	356, 566
MspI	CCGG	2 cut(s)	44, 877
MspR9I	CCNGG	4 cut(s)	20, 149, 632, 1030
MvaI	CCWGG	4 cut(s)	20, 149, 632, 1030
MvnI	CGCG	2 cut(s)	8, 38
MwoI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1081
NaeI	GCCGGC	1 cut(s)	878
NdeII	GATC	4 cut(s)	76, 457, 1000, 1062
NgoMIV	GCCGGC	1 cut(s)	876
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	2 cut(s)	1025, 1161
NlaIV	GGNNCC	2 cut(s)	101, 339
NmeAIII	GCCGAG	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	32
NspI	RCATGY	1 cut(s)	1025
OliI	CACNNNNGTG	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	1157
PciSI	GCTCTTC	1 cut(s)	549
PdiI	GCCGGC	1 cut(s)	878
PfeI	GAWTC	1 cut(s)	584
Pfl23II	CGTACG	1 cut(s)	923
PkrI	GCNGC	5 cut(s)	7, 12, 274, 663, 787
PleI	GAGTC	4 cut(s)	31, 580, 693, 975
PpsI	GAGTC	4 cut(s)	31, 580, 693, 975
Psp124BI	GAGCTC	2 cut(s)	51, 799
Psp6I	CCWGG	4 cut(s)	18, 147, 630, 1028
PspGI	CCWGG	4 cut(s)	18, 147, 630, 1028
PspLI	CGTACG	1 cut(s)	923
PspN4I	GGNNCC	2 cut(s)	101, 339
PspXI	VCTCGAGB	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	5 cut(s)	17, 62, 83, 433, 925
RsaNI	GTAC	5 cut(s)	16, 61, 82, 432, 924
RseI	CAYNNNNRTG	2 cut(s)	356, 566
SacI	GAGCTC	2 cut(s)	51, 799
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	4 cut(s)	354, 591, 681, 843
SatI	GCNGC	5 cut(s)	6, 11, 273, 662, 786
Sau3AI	GATC	4 cut(s)	76, 457, 1000, 1062
SchI	GAGTC	4 cut(s)	32, 581, 694, 976
ScrFI	CCNGG	4 cut(s)	20, 149, 632, 1030
SduI	GDGCHC	3 cut(s)	51, 544, 799
SfaNI	GCATC	4 cut(s)	49, 148, 348, 961
SfcI	CTRYAG	1 cut(s)	11
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	356, 566
SmlI	CTYRAG	3 cut(s)	113, 119, 380
SmoI	CTYRAG	3 cut(s)	113, 119, 380
Sse9I	AATT	9 cut(s)	64, 181, 240, 280, 518, 764, 864, 996, 1053
SsiI	CCGC	2 cut(s)	6, 1133
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	5 cut(s)	318, 416, 474, 554, 692
SstI	GAGCTC	2 cut(s)	51, 799
StyD4I	CCNGG	4 cut(s)	18, 147, 630, 1028
TaaI	ACNGT	4 cut(s)	171, 443, 1018, 1091
TaqI	TCGA	4 cut(s)	120, 456, 939, 1128
TasI	AATT	9 cut(s)	64, 181, 240, 280, 518, 764, 864, 996, 1053
TatI	WGTACW	1 cut(s)	431
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	4 cut(s)	354, 591, 681, 843
Tru9I	TTAA	4 cut(s)	354, 591, 681, 843
TscAI	CASTG	2 cut(s)	196, 573
TseI	GCWGC	4 cut(s)	10, 272, 661, 785
TspDTI	ATGAA	3 cut(s)	175, 480, 968
TspGWI	ACGGA	2 cut(s)	343, 500
TspRI	CASTG	2 cut(s)	196, 573
XapI	RAATTY	2 cut(s)	518, 1053
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	1 cut(s)	1025
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	5 cut(s)	318, 416, 474, 554, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.