Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009252

Physical Location & Seq

Genomic Coordinates Reverse (-)

27123755 .. 27129027

Gene Structure 5273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCCGCTCTGCAATACCTAGAATCTTCGCGCAACGCGCACCCGGAGCTCGCCGAGTGGTACAATTCGCTGGCAGATCTGTACCAGAAGAAGCTATGGCACCAGCTCACTCTCAAGCTCGAGCAGTTTGTTGCTCTCGCCGTGTTTCAGGCTGGCGATGCTCTGATACAGTTATATCACAATTTCATCACAGACTTCGAGACTAAAATCAACCTTCTGAAGCTTGCACACTTTGCAGTTATTGTCTCTCGTCAGTATCCAGAGAAAGAAGCTGCTATCAGTTACCTTGAAGGGGTGATTGAGAAGCTTCAGGCCACTAGAGAGCAACGGATAGAGGAGCCAATCCTTTACATCAAAATGCAAATAGCAATATTCAAACTTGAGCAACAAGACCAGAAGGAGTGCAAAAAGCTTCTAGAAGATGGAAAGAGCACACTGGACAGTATGACTGACATTGATCCATCTGTTTATGCCAGTTATTATTGGGTTTCATCTCAATACTATAAGTTCCGCCAGGAATTTGCTGAGTTCTACAAAAGCGCTCTTCTTTATCTAGCATACACATCAGTGGAGTCTCTCTCAGATTCATTTAAGCTGGATTTGGCATTTGATTTGTCCCTTTCTGCGCTCCTGGGAGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATTATTAAGAGTCTTCTAGGGACTAAGGTAGAGTGGCTTTACTATATTCTTCAAGCATTCAACTCTGGTGATTTAGGATGTTATCAAGAGTTATGCCGTGTGCACAATGCTGCTCTGAGTGCTCAACCGGCATTAGTTGAGAACGAGAAGAAGCTTTTGGAAAAGATTAACATTTTGTGCTTGATGGAAATTATCTTCAGCCGGCCATCTGAAGATCGAACTATACCTTTGAGTATCATTGCAGAGCGTACAAAACTTTCGATCGAGGATGTAGAGCATCTTCTTGTGAAGAGCCTTTCTGTTCATCTGATTGAGGGAATAATTGATCAAGTTGAGGGGACGGTCCATGTTTCTTGGGTGCAACCAAGAGTTTTGGGAATTCCACAGATCAAATCTGTGCGTGATCGGCTGGATGGTTGGTTGGATAAAGTGCATACTGCTTTGTTATCTATCGAGGCCGAAACACCTGATTTGGTTGCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030163 GO:0032991 GO:0034622 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

386

Amino Acids

44.19

Weight (kDa)

5.13

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSD13_N	PF22037	21 - 242	5.4e-74	PSD13 N-terminal repeats
PCI	PF01399	262 - 344	2.3e-09	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19006 AT4G19006 AT5G45620 AT5G45620
fragaria_vesca	FvH4_5g23350 FvH4_5g23350 FvH4_5g23350
malus_domestica	MD06G1024700.v1.1 MD16G1281300.v1.1
prunus_persica	Prupe.5G025900_v2.0.a1
pyrus_communis	pycom06g02000 pycom16g25120
rosa_chinensis	RchiOBHm_Chr7g0212291
rosa_laevigata	RLG00000002897
rosa_multiflora	Rmu_sc0001911.1_g000049
rosa_roxburghii	Rroxscaffold_3G00246920
rosa_rugosa	Rorug07G0133400
rosa_samantha	Rh7AG266000 Rh7BG260100 Rh7CG282900 Rh7DG272900
rosa_wichuraiana	Rw7G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	8
AccII	CGCG	2 cut(s)	31, 38
AciI	CCGC	2 cut(s)	6, 511
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	2 cut(s)	3, 878
AcsI	RAATTY	2 cut(s)	518, 1053
AcuI	CTGAAG	4 cut(s)	239, 293, 856, 906
AfaI	GTAC	3 cut(s)	62, 83, 925
AfeI	AGCGCT	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	290, 376, 728, 736
AjnI	CCWGG	2 cut(s)	513, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AleI	CACNNNNGTG	1 cut(s)	566
Alw21I	GWGCWC	4 cut(s)	51, 434, 780, 799
Alw26I	GTCTC	3 cut(s)	194, 250, 579
Alw44I	GTGCAC	1 cut(s)	776
AlwI	GGATC	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	119
Aor51HI	AGCGCT	1 cut(s)	541
AoxI	GGCC	4 cut(s)	3, 312, 878, 1131
ApaLI	GTGCAC	1 cut(s)	776
ApeKI	GCWGC	2 cut(s)	272, 785
ApoI	RAATTY	2 cut(s)	518, 1053
AspLEI	GCGC	4 cut(s)	33, 40, 542, 628
AspS9I	GGNCC	1 cut(s)	1018
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	307, 755
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	1018
BaeGI	GKGCMC	1 cut(s)	780
BanI	GGYRCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	939, 971
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	4 cut(s)	51, 434, 780, 799
BbvI	GCAGC	2 cut(s)	259, 772
BccI	CCATC	6 cut(s)	416, 469, 678, 853, 889, 1082
BceAI	ACGGC	2 cut(s)	125, 756
BciT130I	CCWGG	2 cut(s)	515, 632
BciVI	GTATCC	1 cut(s)	267
BclI	TGATCA	1 cut(s)	1000
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	3 cut(s)	194, 250, 579
BfaI	CTAG	5 cut(s)	20, 318, 416, 554, 692
BfoI	RGCGCY	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	3 cut(s)	6, 273, 786
BlsI	GCNGC	3 cut(s)	7, 274, 787
Bme1390I	CCNGG	3 cut(s)	44, 515, 632
Bme18I	GGWCC	1 cut(s)	1018
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	1018
BmiI	GGNNCC	2 cut(s)	101, 339
BmrFI	CCNGG	3 cut(s)	44, 515, 632
BmsI	GCATC	2 cut(s)	148, 961
BpiI	GAAGAC	1 cut(s)	680
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpuEI	CTTGAG	2 cut(s)	98, 401
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	2 cut(s)	802, 876
Bse1I	ACTGG	2 cut(s)	441, 474
Bse3DI	GCAATG	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	515, 632
BseDI	CCNNGG	1 cut(s)	631
BseGI	GGATG	4 cut(s)	670, 758, 949, 1093
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	3 cut(s)	516, 594, 782
BseNI	ACTGG	2 cut(s)	441, 474
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	780
BseXI	GCAGC	2 cut(s)	259, 772
Bsh1236I	CGCG	2 cut(s)	31, 38
Bsh1285I	CGRYCG	1 cut(s)	939
BshFI	GGCC	4 cut(s)	5, 314, 880, 1133
BshNI	GGYRCC	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	939
BsiHKAI	GWGCWC	4 cut(s)	51, 434, 780, 799
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	44, 803, 877
BslFI	GGGAC	3 cut(s)	601, 709, 1027
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	3 cut(s)	194, 250, 579
BsmFI	GGGAC	3 cut(s)	601, 709, 1027
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	4 cut(s)	5, 314, 880, 1133
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	4 cut(s)	51, 434, 780, 799
Bsp143I	GATC	7 cut(s)	76, 457, 889, 936, 1000, 1062, 1078
BspACI	CCGC	2 cut(s)	6, 511
BspANI	GGCC	4 cut(s)	5, 314, 880, 1133
BspCNI	CTCAG	3 cut(s)	517, 593, 783
BspFNI	CGCG	2 cut(s)	31, 38
BspLI	GGNNCC	2 cut(s)	101, 339
BspPI	GGATC	1 cut(s)	452
BspQI	GCTCTTC	2 cut(s)	549, 959
BspT107I	GGYRCC	1 cut(s)	99
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	912
BsrFI	RCCGGY	2 cut(s)	802, 876
BsrI	ACTGG	2 cut(s)	441, 474
BssAI	RCCGGY	2 cut(s)	802, 876
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	7 cut(s)	76, 457, 889, 936, 1000, 1062, 1078
Bst2UI	CCWGG	2 cut(s)	515, 632
Bst4CI	ACNGT	3 cut(s)	171, 443, 1018
Bst6I	CTCTTC	2 cut(s)	549, 959
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	5 cut(s)	51, 72, 154, 225, 878
BstDEI	CTNAG	4 cut(s)	525, 580, 699, 791
BstF5I	GGATG	4 cut(s)	670, 758, 949, 1093
BstFNI	CGCG	2 cut(s)	31, 38
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	4 cut(s)	33, 40, 542, 628
BstKTI	GATC	7 cut(s)	79, 460, 892, 939, 1003, 1065, 1081
BstMAI	GTCTC	3 cut(s)	194, 250, 579
BstMBI	GATC	7 cut(s)	76, 457, 889, 936, 1000, 1062, 1078
BstMCI	CGRYCG	1 cut(s)	939
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1081
BstNI	CCWGG	2 cut(s)	515, 632
BstSCI	CCNGG	3 cut(s)	42, 513, 630
BstSLI	GKGCMC	1 cut(s)	780
BstUI	CGCG	2 cut(s)	31, 38
BstV1I	GCAGC	2 cut(s)	259, 772
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	5, 314, 880, 1133
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	670, 758, 949, 1093
BtsIMutI	CAGTG	2 cut(s)	434, 573
Cac8I	GCNNGC	5 cut(s)	51, 72, 154, 225, 878
CfoI	GCGC	4 cut(s)	33, 40, 542, 628
Cfr10I	RCCGGY	2 cut(s)	802, 876
Cfr13I	GGNCC	1 cut(s)	1018
Csp6I	GTAC	3 cut(s)	61, 82, 924
CviAII	CATG	1 cut(s)	1022
CviQI	GTAC	3 cut(s)	61, 82, 924
DdeI	CTNAG	4 cut(s)	525, 580, 699, 791
DpnI	GATC	7 cut(s)	78, 459, 891, 938, 1002, 1064, 1080
DpnII	GATC	7 cut(s)	76, 457, 889, 936, 1000, 1062, 1078
EaeI	YGGCCR	2 cut(s)	3, 878
Eam1104I	CTCTTC	2 cut(s)	549, 959
EarI	CTCTTC	2 cut(s)	549, 959
EciI	GGCGGA	1 cut(s)	500
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	1018
Eco47III	AGCGCT	1 cut(s)	541
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	4 cut(s)	239, 293, 856, 906
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	1053
EcoRII	CCWGG	2 cut(s)	513, 630
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	1 cut(s)	1025
FaqI	GGGAC	3 cut(s)	601, 709, 1027
FatI	CATG	1 cut(s)	1021
FbaI	TGATCA	1 cut(s)	1000
Fnu4HI	GCNGC	3 cut(s)	6, 273, 786
FokI	GGATG	4 cut(s)	657, 765, 956, 1100
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	3 cut(s)	6, 273, 786
FspBI	CTAG	5 cut(s)	20, 318, 416, 554, 692
GlaI	GCGC	4 cut(s)	32, 39, 541, 627
GluI	GCNGC	3 cut(s)	6, 273, 786
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	4 cut(s)	5, 314, 880, 1133
HapII	CCGG	3 cut(s)	44, 803, 877
HhaI	GCGC	4 cut(s)	33, 40, 542, 628
Hin1II	CATG	1 cut(s)	1025
Hin6I	GCGC	4 cut(s)	31, 38, 540, 626
HinP1I	GCGC	4 cut(s)	31, 38, 540, 626
HindIII	AAGCTT	4 cut(s)	221, 305, 410, 827
HinfI	GANTC	4 cut(s)	23, 572, 584, 685
HpaII	CCGG	3 cut(s)	44, 803, 877
HphI	GGTGA	2 cut(s)	307, 755
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	6 cut(s)	165, 219, 583, 792, 886, 984
Hpy188III	TCNNGA	5 cut(s)	199, 260, 416, 761, 1158
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	3 cut(s)	224, 284, 391
HpyCH4III	ACNGT	3 cut(s)	171, 443, 1018
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1081
HpyF3I	CTNAG	4 cut(s)	525, 580, 699, 791
Hsp92II	CATG	1 cut(s)	1025
HspAI	GCGC	4 cut(s)	31, 38, 540, 626
KroI	GCCGGC	1 cut(s)	876
KroNI	GCCGGC	1 cut(s)	878
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	7 cut(s)	76, 457, 889, 936, 1000, 1062, 1078
LguI	GCTCTTC	2 cut(s)	549, 959
LmnI	GCTCC	3 cut(s)	46, 337, 633
Lsp1109I	GCAGC	2 cut(s)	259, 772
LweI	GCATC	2 cut(s)	148, 961
MaeI	CTAG	5 cut(s)	20, 318, 416, 554, 692
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	7 cut(s)	78, 459, 891, 938, 1002, 1064, 1080
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	7 cut(s)	76, 457, 889, 936, 1000, 1062, 1078
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	4 cut(s)	51, 434, 780, 799
MluCI	AATT	6 cut(s)	64, 181, 518, 864, 996, 1053
MlyI	GAGTC	2 cut(s)	581, 694
MmeI	TCCRAC	1 cut(s)	1077
MnlI	CCTC	5 cut(s)	328, 934, 982, 1003, 1123
MroNI	GCCGGC	1 cut(s)	876
MseI	TTAA	3 cut(s)	591, 681, 843
MslI	CAYNNNNRTG	2 cut(s)	356, 566
MspI	CCGG	3 cut(s)	44, 803, 877
MspR9I	CCNGG	3 cut(s)	44, 515, 632
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	2 cut(s)	515, 632
MvnI	CGCG	2 cut(s)	31, 38
MwoI	GCNNNNNNNGC	7 cut(s)	37, 46, 158, 233, 794, 803, 1081
NaeI	GCCGGC	1 cut(s)	878
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	7 cut(s)	76, 457, 889, 936, 1000, 1062, 1078
NgoMIV	GCCGGC	1 cut(s)	876
NlaIII	CATG	1 cut(s)	1025
NlaIV	GGNNCC	2 cut(s)	101, 339
NmeAIII	GCCGAG	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	119
PciSI	GCTCTTC	2 cut(s)	549, 959
PctI	GAATGC	1 cut(s)	731
PdiI	GCCGGC	1 cut(s)	878
PfeI	GAWTC	2 cut(s)	23, 584
PkrI	GCNGC	3 cut(s)	7, 274, 787
Ple19I	CGATCG	1 cut(s)	939
PleI	GAGTC	2 cut(s)	580, 693
PpsI	GAGTC	2 cut(s)	580, 693
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	513, 630
PspGI	CCWGG	2 cut(s)	513, 630
PspN4I	GGNNCC	2 cut(s)	101, 339
PspPI	GGNCC	1 cut(s)	1018
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	939
RsaI	GTAC	3 cut(s)	62, 83, 925
RsaNI	GTAC	3 cut(s)	61, 82, 924
RseI	CAYNNNNRTG	2 cut(s)	356, 566
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	2 cut(s)	549, 959
SaqAI	TTAA	3 cut(s)	591, 681, 843
SatI	GCNGC	3 cut(s)	6, 273, 786
Sau3AI	GATC	7 cut(s)	76, 457, 889, 936, 1000, 1062, 1078
Sau96I	GGNCC	1 cut(s)	1018
SchI	GAGTC	2 cut(s)	581, 694
ScrFI	CCNGG	3 cut(s)	44, 515, 632
SduI	GDGCHC	4 cut(s)	51, 434, 780, 799
SfaNI	GCATC	2 cut(s)	148, 961
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	1018
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	356, 566
SmlI	CTYRAG	3 cut(s)	113, 119, 380
SmoI	CTYRAG	3 cut(s)	113, 119, 380
Sse9I	AATT	6 cut(s)	64, 181, 518, 864, 996, 1053
SsiI	CCGC	2 cut(s)	6, 511
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	5 cut(s)	20, 318, 416, 554, 692
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	3 cut(s)	42, 513, 630
TaaI	ACNGT	3 cut(s)	171, 443, 1018
TaqI	TCGA	6 cut(s)	120, 198, 892, 935, 939, 1128
TasI	AATT	6 cut(s)	64, 181, 518, 864, 996, 1053
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	23, 584
Tru1I	TTAA	3 cut(s)	591, 681, 843
Tru9I	TTAA	3 cut(s)	591, 681, 843
TscAI	CASTG	2 cut(s)	441, 573
TseI	GCWGC	2 cut(s)	272, 785
TspDTI	ATGAA	4 cut(s)	175, 480, 576, 968
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	441, 573
VneI	GTGCAC	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	1018
XapI	RAATTY	2 cut(s)	518, 1053
XbaI	TCTAGA	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	5 cut(s)	20, 318, 416, 554, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.