Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009252

Physical Location & Seq

Genomic Coordinates Forward (+)

18501486 .. 18504144

Gene Structure 2659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTGCTCTACAATACTTGGAATCTCTGAAAAATACGCATCCAGAGCTCGGCGAATGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAGCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGTGATGCTTTGATTCAGTTCTATCACAATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCGCATTTTGCTGTGGTGGTCTCTCGACAGTACTCTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGCGTGATTGAGAAACTTAGAGCTACTAAAGAGCCTAGGATTACTGAACCAATCATTTATATTGAAACACAAAAAGCTTTATTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCAAAAAAATCTTGGACGATGGAAAGAGCTCTCTTGATAGTATGACTGACATTGATCCATCAGTCTATGCCAACTTCTATTGGGTGTCTTCTCAGTACCATAAGTGCCGTCAAGAATTTTCTGATTTCTACAAAAGTGCTCTGCTTTATCTTGCATACACGTCTGTGGAGGACCTTTCAGAATCGTTTAAGCTGGATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTATAACTTTGGGGAACTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGGCTCTACCACATTCTACAGGCATTCAACCATGGTGATTTAGTTCAGTATCAAGAACTATGCCGTGTGCACAACGCATCCTTGATTGCTCAACCAGCACTTGTTGAGAACGAGAAGAAGCTTTTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCCGCTGAAGATAGAACCATTCCTTTGAGCATCATCGCTGAGCGTACTAAACTTTCCATTGAAGATGTTGAGCACCTTCTCATGAAGAGCCTTTCTGTGCATTTGATCGAGGGCATCATAGACCAAGTGAACGGAACAATTTATGTCTCATGGGCGCAACCGAGAGTACTAGGGATTCCACAGATCAAGGCTTTGAGGGATCAATTAGACAGTTGGGTTGACAAAGTTCACACCACTTTACTATCTGTTGAAGCCGAGACACCAGATCTTGTTGCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030163 GO:0032991 GO:0034622 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

386

Amino Acids

44.17

Weight (kDa)

5.17

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSD13_N	PF22037	21 - 242	1.4e-73	PSD13 N-terminal repeats
PCI	PF01399	262 - 344	8.4e-10	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19006 AT4G19006 AT5G45620 AT5G45620
fragaria_vesca	FvH4_5g23350 FvH4_5g23350 FvH4_5g23350
malus_domestica	MD06G1024700.v1.1 MD16G1281300.v1.1
prunus_persica	Prupe.5G025900_v2.0.a1
pyrus_communis	pycom06g02000 pycom16g25120
rosa_chinensis	RchiOBHm_Chr7g0212291
rosa_laevigata	RLG00000002897
rosa_multiflora	Rmu_sc0001911.1_g000049
rosa_roxburghii	Rroxscaffold_3G00246920
rosa_rugosa	Rorug07G0133400
rosa_samantha	Rh7AG266000 Rh7BG260100 Rh7CG282900 Rh7DG272900
rosa_wichuraiana	Rw7G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	228
AciI	CCGC	1 cut(s)	882
AclWI	GGATC	2 cut(s)	452, 1086
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	3 cut(s)	239, 856, 906
AfaI	GTAC	5 cut(s)	62, 257, 500, 925, 1047
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflII	CTTAAG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	7 cut(s)	290, 356, 376, 682, 736, 941, 1130
AjiI	CACGTC	1 cut(s)	564
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AleI	CACNNNNGTG	1 cut(s)	566
Alw21I	GWGCWC	5 cut(s)	51, 434, 544, 780, 954
Alw26I	GTCTC	5 cut(s)	194, 250, 692, 1030, 1130
Alw44I	GTGCAC	1 cut(s)	776
AlwI	GGATC	2 cut(s)	452, 1086
ApaLI	GTGCAC	1 cut(s)	776
ApeKI	GCWGC	3 cut(s)	5, 272, 1154
ApoI	RAATTY	1 cut(s)	518
AspA2I	CCTAGG	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	229, 1036
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	4 cut(s)	100, 167, 401, 755
AvaII	GGWCC	1 cut(s)	574
AvrII	CCTAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	780
BanII	GRGCYC	2 cut(s)	51, 434
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	5 cut(s)	51, 434, 544, 780, 954
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	416, 469, 678
BceAI	ACGGC	2 cut(s)	495, 756
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	5 cut(s)	194, 250, 692, 1030, 1130
BfaI	CTAG	2 cut(s)	327, 1049
BfmI	CTRYAG	2 cut(s)	273, 725
BfrI	CTTAAG	1 cut(s)	113
BglII	AGATCT	2 cut(s)	76, 1144
BisI	GCNGC	3 cut(s)	6, 273, 1155
BlnI	CCTAGG	1 cut(s)	326
BlpI	GCTNAGC	1 cut(s)	918
BlsI	GCNGC	3 cut(s)	7, 274, 1156
BmcAI	AGTACT	2 cut(s)	257, 1047
Bme18I	GGWCC	1 cut(s)	574
BmgBI	CACGTC	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	574
BmsI	GCATC	6 cut(s)	49, 109, 148, 794, 918, 1002
BpiI	GAAGAC	1 cut(s)	483
Bpu1102I	GCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	326, 691, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	326, 691, 739
BseGI	GGATG	3 cut(s)	40, 670, 785
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	252, 509, 909
BseSI	GKGCMC	1 cut(s)	780
BseXI	GCAGC	1 cut(s)	259
BsiHKAI	GWGCWC	5 cut(s)	51, 434, 544, 780, 954
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	5 cut(s)	194, 250, 692, 1030, 1130
BsmBI	CGTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	731
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	5 cut(s)	51, 434, 544, 780, 954
Bsp1720I	GCTNAGC	1 cut(s)	918
Bsp19I	CCATGG	1 cut(s)	739
BspACI	CCGC	1 cut(s)	882
BspCNI	CTCAG	3 cut(s)	253, 508, 910
BspHI	TCATGA	1 cut(s)	960
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	452, 1086
BspQI	GCTCTTC	1 cut(s)	959
BspTI	CTTAAG	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	326, 691, 739
BssT1I	CCWWGG	3 cut(s)	326, 691, 739
Bst4CI	ACNGT	4 cut(s)	126, 255, 663, 1091
Bst6I	CTCTTC	1 cut(s)	959
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	4 cut(s)	261, 308, 495, 918
BstDSI	CCRYGG	1 cut(s)	739
BstF5I	GGATG	3 cut(s)	40, 670, 785
BstHHI	GCGC	2 cut(s)	229, 1036
BstMAI	GTCTC	5 cut(s)	194, 250, 692, 1030, 1130
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 158, 233, 803
BstSFI	CTRYAG	2 cut(s)	273, 725
BstSLI	GKGCMC	1 cut(s)	780
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	76, 1144
BstYI	RGATCY	2 cut(s)	76, 1144
BtgI	CCRYGG	1 cut(s)	739
BtgZI	GCGATG	2 cut(s)	115, 898
BtrI	CACGTC	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	40, 670, 785
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	960
CfoI	GCGC	2 cut(s)	229, 1036
Cfr13I	GGNCC	1 cut(s)	574
Csp6I	GTAC	5 cut(s)	61, 256, 499, 924, 1046
CviAII	CATG	3 cut(s)	740, 961, 1029
CviQI	GTAC	5 cut(s)	61, 256, 499, 924, 1046
DdeI	CTNAG	4 cut(s)	261, 308, 495, 918
Eam1104I	CTCTTC	1 cut(s)	959
EarI	CTCTTC	1 cut(s)	959
Ecl136II	GAGCTC	2 cut(s)	49, 432
Eco130I	CCWWGG	3 cut(s)	326, 691, 739
Eco24I	GRGCYC	2 cut(s)	51, 434
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	574
Eco53kI	GAGCTC	2 cut(s)	49, 432
Eco57I	CTGAAG	3 cut(s)	239, 856, 906
EcoICRI	GAGCTC	2 cut(s)	49, 432
EcoO109I	RGGNCCY	1 cut(s)	574
EcoT14I	CCWWGG	3 cut(s)	326, 691, 739
EcoT38I	GRGCYC	2 cut(s)	51, 434
ErhI	CCWWGG	3 cut(s)	326, 691, 739
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	3 cut(s)	743, 964, 1032
FatI	CATG	3 cut(s)	739, 960, 1028
FauI	CCCGC	1 cut(s)	889
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	6, 273, 1155
FokI	GGATG	3 cut(s)	27, 657, 772
FriOI	GRGCYC	2 cut(s)	51, 434
Fsp4HI	GCNGC	3 cut(s)	6, 273, 1155
FspBI	CTAG	2 cut(s)	327, 1049
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	2 cut(s)	228, 1035
GluI	GCNGC	3 cut(s)	6, 273, 1155
HhaI	GCGC	2 cut(s)	229, 1036
Hin1II	CATG	3 cut(s)	743, 964, 1032
Hin6I	GCGC	2 cut(s)	227, 1034
HinP1I	GCGC	2 cut(s)	227, 1034
HincII	GTYRAC	1 cut(s)	1099
HindII	GTYRAC	1 cut(s)	1099
HindIII	AAGCTT	4 cut(s)	221, 366, 377, 827
HinfI	GANTC	4 cut(s)	23, 166, 584, 1054
HphI	GGTGA	4 cut(s)	100, 167, 401, 755
Hpy166II	GTNNAC	4 cut(s)	778, 1009, 1099, 1108
Hpy188I	TCNGA	7 cut(s)	30, 87, 219, 262, 396, 526, 583
Hpy188III	TCNNGA	8 cut(s)	44, 249, 287, 437, 515, 761, 862, 961
Hpy8I	GTNNAC	4 cut(s)	778, 1009, 1099, 1108
HpyAV	CCTTC	2 cut(s)	391, 965
HpyCH4III	ACNGT	4 cut(s)	126, 255, 663, 1091
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	7 cut(s)	74, 275, 405, 557, 778, 979, 1154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 158, 233, 803
HpyF3I	CTNAG	4 cut(s)	261, 308, 495, 918
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	3 cut(s)	743, 964, 1032
HspAI	GCGC	2 cut(s)	227, 1034
Ksp22I	TGATCA	1 cut(s)	391
LguI	GCTCTTC	1 cut(s)	959
LpnPI	CCDG	8 cut(s)	57, 82, 134, 138, 581, 713, 816, 1155
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	6 cut(s)	49, 109, 148, 794, 918, 1002
MaeI	CTAG	2 cut(s)	327, 1049
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	1 cut(s)	615
MboII	GAAGA	8 cut(s)	206, 217, 483, 835, 862, 899, 953, 976
MflI	RGATCY	2 cut(s)	76, 1144
MhlI	GDGCHC	5 cut(s)	51, 434, 544, 780, 954
MluCI	AATT	5 cut(s)	64, 181, 518, 1017, 1082
MnlI	CCTC	3 cut(s)	565, 982, 1068
MseI	TTAA	2 cut(s)	114, 591
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	731
MwoI	GCNNNNNNNGC	4 cut(s)	46, 158, 233, 803
NcoI	CCATGG	1 cut(s)	739
NlaIII	CATG	3 cut(s)	743, 964, 1032
NmeAIII	GCCGAG	2 cut(s)	30, 1159
NmuCI	GTSAC	1 cut(s)	615
NsbI	TGCGCA	1 cut(s)	228
OliI	CACNNNNGTG	1 cut(s)	566
PagI	TCATGA	1 cut(s)	960
PciSI	GCTCTTC	1 cut(s)	959
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	4 cut(s)	23, 166, 584, 1054
PkrI	GCNGC	3 cut(s)	7, 274, 1156
PpuMI	RGGWCCY	1 cut(s)	574
Psp124BI	GAGCTC	2 cut(s)	51, 434
Psp5II	RGGWCCY	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	574
PspPPI	RGGWCCY	1 cut(s)	574
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	76, 1144
RsaI	GTAC	5 cut(s)	62, 257, 500, 925, 1047
RsaNI	GTAC	5 cut(s)	61, 256, 499, 924, 1046
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	2 cut(s)	51, 434
SapI	GCTCTTC	1 cut(s)	959
SaqAI	TTAA	2 cut(s)	114, 591
SatI	GCNGC	3 cut(s)	6, 273, 1155
Sau96I	GGNCC	1 cut(s)	574
ScaI	AGTACT	2 cut(s)	257, 1047
SduI	GDGCHC	5 cut(s)	51, 434, 544, 780, 954
SfaNI	GCATC	6 cut(s)	49, 109, 148, 794, 918, 1002
SfcI	CTRYAG	2 cut(s)	273, 725
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	113, 380
SmoI	CTYRAG	2 cut(s)	113, 380
Sse9I	AATT	5 cut(s)	64, 181, 518, 1017, 1082
SsiI	CCGC	1 cut(s)	882
SspMI	CTAG	2 cut(s)	327, 1049
SstI	GAGCTC	2 cut(s)	51, 434
StyI	CCWWGG	3 cut(s)	326, 691, 739
TaaI	ACNGT	4 cut(s)	126, 255, 663, 1091
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	5 cut(s)	120, 250, 609, 861, 987
TasI	AATT	5 cut(s)	64, 181, 518, 1017, 1082
TatI	WGTACW	2 cut(s)	255, 1045
TfiI	GAWTC	4 cut(s)	23, 166, 584, 1054
Tru1I	TTAA	2 cut(s)	114, 591
Tru9I	TTAA	2 cut(s)	114, 591
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	3 cut(s)	5, 272, 1154
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	3 cut(s)	118, 175, 977
TspGWI	ACGGA	1 cut(s)	1026
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	113
VneI	GTGCAC	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	1 cut(s)	518
XmaJI	CCTAGG	1 cut(s)	326
XspI	CTAG	2 cut(s)	327, 1049
ZrmI	AGTACT	2 cut(s)	257, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.