MD06G1024700.v1.1

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
3011874 .. 3017375
5502 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1024700.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGGCCGCGCTGCAGTACCTGGAGTCGCTGCGCAACGCGCATCCGGAGCTCGCCGAATGGTACAATTCACTCGCAGATCTGTACCAAAGGAAGCTATGGCACCAGCTCACTCTCAAGCTCGAGCAGTTCGTTGCTCTCGCCGTCTTTCAGGCTGGTGATGCTCTGATACAGTTATACCACAATTTCATCACCGATTTTGAGACTAAAATCAACCTTCTCAAGCTTGCACACTTTGCAGTCATTGTTTCTCGACAGTACCCAGAGAAGGAAGCTGCTATCAGTTACCTAGAAGGGGTGATTGAGAAGCTTCAAGCCACTAGAGAGCAACGCATAGAGGAACCAATCCTTTACATTAAGATGCAAATAGCAATATTCAAACTTGAACAACAAGACCAAAAGGGGTGCAAAAATCTTCTAGAAGATGGAAAGACTACACTTGACAGTATGACTGATATTGATCCGTCTGTGTATGCTAGCTATTATTGGGTGTCATCTCAATATCATAAGTTCCGTCAAGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTTTATCTGGCATACACATCAGTGGAGTCTCTCTCAGAATCATTCAAGCTGGATCTGGCATTTGATTTGTCCCTTTCTGCGCTCCTGGGAGATAACATCTACAACTTTGGAGAGCTGCTTGCGCATCCTATTATTAAGTCTCTTCTTGGGACAAAGGTAGAGTGGCTTTACTATATTCTTCAAGCGTTCAACTCTGGTGATTTAGTTCGGTATCAAGAGTTATGCCGTGTGCACAATGCTGCTCTGAGAGCACAACCGGCATTAGTTGATAATGAGAAGAAGCTTTTGGAGAAGATTAACATTCTGTGCTTGATGGAAATTATCTTCAGCCGGCCAGCTGAAGATCGGACTATACCATTGAGTATCATTGCAGAGCGTACCAAACTTTCAGTCGAGGATGTGGAGCATCTTCTTGTGAAGAGCCTTTCCGTTCATCTGATCGAGGGAATAATCGATCAGGTCGAGGAGACAGTGCATGTGTCCTGGGTGCAGCCAAGAGTTTTGGGGATTCCACAGGTCAAGTCATTGCGTGATAGGTTGGACAGTTGGTTGGACAAAGTCCATACTGCTTTGTTATCTATCGAGGCGGAAACACCTGATTTGGTTGCATCATGA

Protein Analysis

387

Amino Acids

44.38

Weight (kDa)

5.25

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSD13_N PF22037 21 - 242 1e-73 PSD13 N-terminal repeats
PCI PF01399 263 - 344 3.4e-09 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009252)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 32, 669
AccB1I GGYRCC 1 cut(s) 99
AccII CGCG 2 cut(s) 8, 38
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 2 cut(s) 6, 1133
AclWI GGATC 2 cut(s) 452, 606
AcoI YGGCCR 2 cut(s) 3, 878
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 856, 906
AfaI GTAC 5 cut(s) 17, 62, 83, 257, 925
AfiI CCNNNNNNNGG 2 cut(s) 265, 292
AgsI TTSAA 6 cut(s) 311, 376, 383, 592, 728, 736
AjnI CCWGG 3 cut(s) 18, 630, 1028
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AleI CACNNNNGTG 1 cut(s) 566
Alw21I GWGCWC 4 cut(s) 51, 544, 780, 799
Alw26I GTCTC 4 cut(s) 194, 579, 690, 1007
Alw44I GTGCAC 1 cut(s) 776
AlwI GGATC 2 cut(s) 452, 606
AlwNI CAGNNNCTG 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 2 cut(s) 3, 878
ApaLI GTGCAC 1 cut(s) 776
ApeKI GCWGC 6 cut(s) 10, 28, 272, 661, 785, 1036
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 921, 953
AspLEI GCGC 5 cut(s) 10, 33, 40, 628, 670
AsuHPI GGTGA 4 cut(s) 167, 181, 307, 755
AsuNHI GCTAGC 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 780
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 4 cut(s) 51, 544, 780, 799
BbvI GCAGC 5 cut(s) 15, 259, 648, 772, 1048
BccI CCATC 2 cut(s) 416, 853
BceAI ACGGC 2 cut(s) 125, 756
BciT130I CCWGG 3 cut(s) 20, 632, 1030
BcoDI GTCTC 4 cut(s) 194, 579, 690, 1007
BfaI CTAG 4 cut(s) 287, 318, 416, 474
BfmI CTRYAG 1 cut(s) 11
BglII AGATCT 1 cut(s) 76
BisI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
BlsI GCNGC 7 cut(s) 7, 12, 30, 274, 663, 787, 1038
Bme1390I CCNGG 3 cut(s) 20, 632, 1030
BmeT110I CYCGRG 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 101, 339
BmrFI CCNGG 3 cut(s) 20, 632, 1030
BmsI GCATC 5 cut(s) 49, 148, 348, 679, 961
BmtI GCTAGC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 563, 595
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 98, 203
Bsa29I ATCGAT 1 cut(s) 999
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 631, 1029
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 292
Bse118I RCCGGY 2 cut(s) 802, 876
Bse3DI GCAATG 2 cut(s) 912, 1070
Bse8I GATNNNNATC 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 3 cut(s) 20, 632, 1030
BseCI ATCGAT 1 cut(s) 999
BseDI CCNNGG 2 cut(s) 631, 1029
BseGI GGATG 3 cut(s) 40, 670, 949
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 265, 292
BseMI GCAATG 2 cut(s) 912, 1070
BseMII CTCAG 3 cut(s) 516, 594, 782
BseRI GAGGAG 1 cut(s) 1025
BseSI GKGCMC 1 cut(s) 780
BseXI GCAGC 5 cut(s) 15, 259, 648, 772, 1048
BsgI GTGCAG 1 cut(s) 1055
Bsh1236I CGCG 2 cut(s) 8, 38
BshFI GGCC 2 cut(s) 5, 880
BshNI GGYRCC 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 999
BsiHKAI GWGCWC 4 cut(s) 51, 544, 780, 799
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 44, 803, 877
BslFI GGGAC 2 cut(s) 601, 709
BslI CCNNNNNNNGG 2 cut(s) 265, 292
BsmAI GTCTC 4 cut(s) 194, 579, 690, 1007
BsmFI GGGAC 2 cut(s) 601, 709
BsnI GGCC 2 cut(s) 5, 880
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 4 cut(s) 51, 544, 780, 799
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 6 cut(s) 76, 457, 598, 889, 984, 1000
BspACI CCGC 2 cut(s) 6, 1133
BspANI GGCC 2 cut(s) 5, 880
BspCNI CTCAG 3 cut(s) 517, 593, 783
BspDI ATCGAT 1 cut(s) 999
BspEI TCCGGA 1 cut(s) 43
BspFNI CGCG 2 cut(s) 8, 38
BspHI TCATGA 1 cut(s) 1157
BspLI GGNNCC 2 cut(s) 101, 339
BspMAI CTGCAG 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 452, 606
BspQI GCTCTTC 2 cut(s) 549, 959
BspT107I GGYRCC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 912, 1070
BsrFI RCCGGY 2 cut(s) 802, 876
BssAI RCCGGY 2 cut(s) 802, 876
BssECI CCNNGG 2 cut(s) 631, 1029
BssMI GATC 6 cut(s) 76, 457, 598, 889, 984, 1000
Bst2UI CCWGG 3 cut(s) 20, 632, 1030
Bst4CI ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
Bst6I CTCTTC 3 cut(s) 549, 693, 959
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 6 cut(s) 51, 225, 475, 666, 878, 882
BstDEI CTNAG 3 cut(s) 525, 580, 791
BstF5I GGATG 3 cut(s) 40, 670, 949
BstFNI CGCG 2 cut(s) 8, 38
BstHHI GCGC 5 cut(s) 10, 33, 40, 628, 670
BstKTI GATC 6 cut(s) 79, 460, 601, 892, 987, 1003
BstMAI GTCTC 4 cut(s) 194, 579, 690, 1007
BstMBI GATC 6 cut(s) 76, 457, 598, 889, 984, 1000
BstMWI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 667, 794, 803
BstNI CCWGG 3 cut(s) 20, 632, 1030
BstNSI RCATGY 1 cut(s) 1025
BstSCI CCNGG 3 cut(s) 18, 630, 1028
BstSFI CTRYAG 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 780
BstUI CGCG 2 cut(s) 8, 38
BstV1I GCAGC 5 cut(s) 15, 259, 648, 772, 1048
BstX2I RGATCY 2 cut(s) 76, 598
BstYI RGATCY 2 cut(s) 76, 598
Bsu15I ATCGAT 1 cut(s) 999
BsuRI GGCC 2 cut(s) 5, 880
BsuTUI ATCGAT 1 cut(s) 999
BtsCI GGATG 3 cut(s) 40, 670, 949
BtsIMutI CAGTG 2 cut(s) 573, 1023
Cac8I GCNNGC 6 cut(s) 51, 225, 475, 666, 878, 882
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 1157
CfoI GCGC 5 cut(s) 10, 33, 40, 628, 670
Cfr10I RCCGGY 2 cut(s) 802, 876
ClaI ATCGAT 1 cut(s) 999
Csp6I GTAC 5 cut(s) 16, 61, 82, 256, 924
CviAII CATG 2 cut(s) 1022, 1158
CviQI GTAC 5 cut(s) 16, 61, 82, 256, 924
DdeI CTNAG 3 cut(s) 525, 580, 791
DpnI GATC 6 cut(s) 78, 459, 600, 891, 986, 1002
DpnII GATC 6 cut(s) 76, 457, 598, 889, 984, 1000
EaeI YGGCCR 2 cut(s) 3, 878
Eam1104I CTCTTC 3 cut(s) 549, 693, 959
EarI CTCTTC 3 cut(s) 549, 693, 959
EciI GGCGGA 1 cut(s) 1148
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 856, 906
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 3 cut(s) 18, 630, 1028
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 2 cut(s) 1025, 1161
FaqI GGGAC 2 cut(s) 601, 709
FatI CATG 2 cut(s) 1021, 1157
Fnu4HI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
FokI GGATG 3 cut(s) 27, 657, 956
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
FspBI CTAG 4 cut(s) 287, 318, 416, 474
FspI TGCGCA 2 cut(s) 32, 669
GlaI GCGC 5 cut(s) 9, 32, 39, 627, 669
GluI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 5, 880
HapII CCGG 3 cut(s) 44, 803, 877
HhaI GCGC 5 cut(s) 10, 33, 40, 628, 670
Hin1II CATG 2 cut(s) 1025, 1161
Hin6I GCGC 5 cut(s) 8, 31, 38, 626, 668
HinP1I GCGC 5 cut(s) 8, 31, 38, 626, 668
HindIII AAGCTT 3 cut(s) 221, 305, 827
HinfI GANTC 4 cut(s) 23, 572, 584, 1054
HpaII CCGG 3 cut(s) 44, 803, 877
HphI GGTGA 4 cut(s) 167, 181, 307, 755
Hpy166II GTNNAC 1 cut(s) 778
Hpy188I TCNGA 5 cut(s) 165, 583, 792, 894, 984
Hpy188III TCNNGA 6 cut(s) 44, 249, 416, 515, 761, 1158
Hpy8I GTNNAC 1 cut(s) 778
HpyAV CCTTC 3 cut(s) 224, 259, 284
HpyCH4III ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 667, 794, 803
HpyF3I CTNAG 3 cut(s) 525, 580, 791
Hsp92II CATG 2 cut(s) 1025, 1161
HspAI GCGC 5 cut(s) 8, 31, 38, 626, 668
Kpn2I TCCGGA 1 cut(s) 43
KroI GCCGGC 1 cut(s) 876
KroNI GCCGGC 1 cut(s) 878
Kzo9I GATC 6 cut(s) 76, 457, 598, 889, 984, 1000
LguI GCTCTTC 2 cut(s) 549, 959
LmnI GCTCC 3 cut(s) 46, 633, 949
Lsp1109I GCAGC 5 cut(s) 15, 259, 648, 772, 1048
LweI GCATC 5 cut(s) 49, 148, 348, 679, 961
MaeI CTAG 4 cut(s) 287, 318, 416, 474
MaeIII GTNAC 1 cut(s) 281
MalI GATC 6 cut(s) 78, 459, 600, 891, 986, 1002
MboI GATC 6 cut(s) 76, 457, 598, 889, 984, 1000
MflI RGATCY 2 cut(s) 76, 598
MhlI GDGCHC 4 cut(s) 51, 544, 780, 799
MluCI AATT 4 cut(s) 64, 181, 518, 864
MlyI GAGTC 2 cut(s) 32, 581
MmeI TCCRAC 2 cut(s) 1065, 1077
MnlI CCTC 5 cut(s) 328, 934, 982, 1003, 1123
MroI TCCGGA 1 cut(s) 43
MroNI GCCGGC 1 cut(s) 876
MseI TTAA 3 cut(s) 354, 681, 843
MslI CAYNNNNRTG 2 cut(s) 356, 566
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 3 cut(s) 44, 803, 877
MspR9I CCNGG 3 cut(s) 20, 632, 1030
MvaI CCWGG 3 cut(s) 20, 632, 1030
MvnI CGCG 2 cut(s) 8, 38
MwoI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 667, 794, 803
NaeI GCCGGC 1 cut(s) 878
NdeII GATC 6 cut(s) 76, 457, 598, 889, 984, 1000
NgoMIV GCCGGC 1 cut(s) 876
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 2 cut(s) 1025, 1161
NlaIV GGNNCC 2 cut(s) 101, 339
NsbI TGCGCA 2 cut(s) 32, 669
NspI RCATGY 1 cut(s) 1025
OliI CACNNNNGTG 1 cut(s) 566
PaeR7I CTCGAG 1 cut(s) 119
PagI TCATGA 1 cut(s) 1157
PciSI GCTCTTC 2 cut(s) 549, 959
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 1005
PdiI GCCGGC 1 cut(s) 878
PfeI GAWTC 2 cut(s) 584, 1054
PflFI GACNNNGTC 1 cut(s) 1103
PkrI GCNGC 7 cut(s) 7, 12, 30, 274, 663, 787, 1038
PleI GAGTC 2 cut(s) 31, 580
PpsI GAGTC 2 cut(s) 31, 580
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 18, 630, 1028
PspGI CCWGG 3 cut(s) 18, 630, 1028
PspN4I GGNNCC 2 cut(s) 101, 339
PspXI VCTCGAGB 1 cut(s) 119
PstI CTGCAG 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 76, 598
PsyI GACNNNGTC 1 cut(s) 1103
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 5 cut(s) 17, 62, 83, 257, 925
RsaNI GTAC 5 cut(s) 16, 61, 82, 256, 924
RseI CAYNNNNRTG 2 cut(s) 356, 566
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 2 cut(s) 549, 959
SaqAI TTAA 3 cut(s) 354, 681, 843
SatI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
Sau3AI GATC 6 cut(s) 76, 457, 598, 889, 984, 1000
SchI GAGTC 2 cut(s) 32, 581
ScrFI CCNGG 3 cut(s) 20, 632, 1030
SduI GDGCHC 4 cut(s) 51, 544, 780, 799
SfaNI GCATC 5 cut(s) 49, 148, 348, 679, 961
SfcI CTRYAG 1 cut(s) 11
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 356, 566
SmlI CTYRAG 3 cut(s) 113, 119, 218
SmoI CTYRAG 3 cut(s) 113, 119, 218
Sse9I AATT 4 cut(s) 64, 181, 518, 864
SsiI CCGC 2 cut(s) 6, 1133
SspI AATATT 1 cut(s) 372
SspMI CTAG 4 cut(s) 287, 318, 416, 474
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 18, 630, 1028
TaaI ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
TaqI TCGA 7 cut(s) 120, 250, 939, 987, 999, 1008, 1128
TasI AATT 4 cut(s) 64, 181, 518, 864
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 584, 1054
Tru1I TTAA 3 cut(s) 354, 681, 843
Tru9I TTAA 3 cut(s) 354, 681, 843
TscAI CASTG 2 cut(s) 573, 1023
TseI GCWGC 6 cut(s) 10, 28, 272, 661, 785, 1036
TspDTI ATGAA 2 cut(s) 175, 968
TspGWI ACGGA 3 cut(s) 450, 500, 964
TspRI CASTG 2 cut(s) 573, 1023
Tth111I GACNNNGTC 1 cut(s) 1103
VneI GTGCAC 1 cut(s) 776
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 1 cut(s) 1025
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 4 cut(s) 287, 318, 416, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.