AT4G19170

dioxygenase 4

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
10481619 .. 10483879
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19170.1

Sequence Viewer

Length: 1788 bp
ATGGACTCTGTTTCTTCTTCTTCCTTCCTCTCCTCCACATTCTCTCTTCATCACTCTCTTCTTCGCCGCCGATCTTCCTCTCCTACTCTCCTCCGTATCAACTCCGCCGTCGTCGAAGAACGTTCTCCAATCACAAACCCAAGCGACAACAATGATCGTCGTAACAAACCCAAAACACTCCACAACCGAACCAATCACACCTTAGTCTCATCACCACCGAAACTCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAACACGTTCATCGATCCACCTTCACGTCCTTCCGTTGATCCAAAACATGTCCTCTCTGATAACTTCGCTCCTGTCCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCACTCTTCCACTGTCACTTAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCGTGGTCCTTACCATCTCTTCGACGGCGACGGTATGCTTCACGCCATAAAAATCCACAACGGTAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAATACAACGTCGAGAAACAAACCGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTCAACGGTGTAACGGCGTCAGTAGCTCGTGGAGCTTTAACGGCAGCTAGGGTTTTAACCGGACAGTATAATCCGGTTAACGGCATTGGTTTAGCTAATACAAGTCTAGCTTTCTTCAGTAACCGTCTCTTTGCTTTAGGTGAATCTGATTTACCCTACGCCGTCCGATTAACCGAATCAGGAGATATTGAAACGATCGGACGGTACGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCTAAAACCGATCCAATAACCGGAGAAACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACATATTTCCGGTTTGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTTTCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCAGAGATTCAGCTTGGCATGAGGATGAACATGTTGGATTTGGTTCTCGAAGGTGGTTCTCCGGTTGGTACTGATAACGGAAAAACTCCAAGGCTTGGAGTGATTCCTAAGTACGCCGGAGATGAGTCGGAGATGAAATGGTTCGAAGTTCCTGGATTCAATATCATTCACGCTATTAATGCTTGGGATGAAGATGATGGAAACAGCGTCGTTTTGATTGCACCGAATATTATGTCGATTGAACATACTTTAGAGAGGATGGATCTGGTTCATGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGGATTGTGAGACGTCATCCGATCTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCTCGGGAGATGTAGCAGGTACGTTTACGCGGCGATTGGAGATCCGATGCCGAAGATCTCCGGTGTGGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGTACGGTGGCCCGTAGAATGTACGGTTCAGGTTGTTACGGCGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTAATCCGGAGGCGGAGGAGGATGATGGTTATGTGGTGACGTATGTTCACGATGAAGTGACTGGAGAATCGAAGTTTCTGGTGATGGACGCTAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGAGGTTGCCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTCAAGGAAAGTGACCTTAATAAGCTTTAA

Protein Analysis

595

Amino Acids

65.6

Weight (kDa)

6.42

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPE65 PF03055 115 - 587 4.5e-121 Retinal pigment epithelial membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012126)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AasI GACNNNNNNGTC 1 cut(s) 994
AatII GACGTC 2 cut(s) 992, 1366
Acc36I ACCTGC 1 cut(s) 1422
AccB7I CCANNNNNTGG 1 cut(s) 1136
AccII CGCG 4 cut(s) 1016, 1034, 1445, 1726
AccIII TCCGGA 2 cut(s) 611, 1597
AciI CCGC 8 cut(s) 67, 105, 948, 1445, 1560, 1604, 1710, 1724
AclI AACGTT 1 cut(s) 121
AclWI GGATC 7 cut(s) 287, 311, 866, 1311, 1451, 1580, 1593
AcuI CTGAAG 1 cut(s) 715
AcyI GRCGYC 3 cut(s) 632, 989, 1363
AfaI GTAC 8 cut(s) 821, 905, 1111, 1154, 1436, 1522, 1541, 1739
AfiI CCNNNNNNNGG 4 cut(s) 695, 881, 1136, 1716
AflIII ACRYGT 4 cut(s) 282, 325, 603, 1071
AgsI TTSAA 5 cut(s) 619, 806, 1201, 1283, 1700
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 2 cut(s) 1192, 1588
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 5 cut(s) 211, 746, 960, 996, 1354
AlwI GGATC 7 cut(s) 287, 311, 866, 1311, 1451, 1580, 1593
Ama87I CYCGRG 1 cut(s) 1418
Aor13HI TCCGGA 2 cut(s) 611, 1597
AoxI GGCC 1 cut(s) 1527
ApeKI GCWGC 1 cut(s) 659
ArsI GACNNNNNNTTYG 2 cut(s) 1259, 1291
AseI ATTAAT 2 cut(s) 1218, 1404
Asp700I GAANNNNTTC 1 cut(s) 1181
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 4 cut(s) 437, 464, 908, 1528
AsuC2I CCSGG 2 cut(s) 952, 1351
AsuHPI GGTGA 8 cut(s) 204, 250, 767, 1339, 1342, 1495, 1639, 1684
AsuII TTCGAA 1 cut(s) 1185
AvaI CYCGRG 1 cut(s) 1418
AvaII GGWCC 3 cut(s) 437, 464, 908
BamHI GGATCC 1 cut(s) 1585
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 2 cut(s) 459, 642
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 671
BccI CCATC 5 cut(s) 480, 1232, 1294, 1610, 1669
BciT130I CCWGG 2 cut(s) 1194, 1590
BcnI CCSGG 2 cut(s) 952, 1351
BcoDI GTCTC 5 cut(s) 211, 746, 960, 996, 1354
BfaI CTAG 3 cut(s) 663, 722, 1581
BfmI CTRYAG 1 cut(s) 535
BfoI RGCGCY 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 1422
BglII AGATCT 1 cut(s) 1470
BisI GCNGC 5 cut(s) 67, 660, 1446, 1710, 1724
BlsI GCNGC 5 cut(s) 68, 661, 1447, 1711, 1725
Bme1390I CCNGG 4 cut(s) 952, 1194, 1351, 1590
Bme18I GGWCC 3 cut(s) 437, 464, 908
BmeT110I CYCGRG 1 cut(s) 1418
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 4 cut(s) 437, 464, 908, 1528
BmiI GGNNCC 3 cut(s) 915, 1587, 1734
BmrFI CCNGG 4 cut(s) 952, 1194, 1351, 1590
BmsI GCATC 1 cut(s) 1452
BpmI CTGGAG 1 cut(s) 1674
Bpu14I TTCGAA 1 cut(s) 1185
BpuMI CCSGG 2 cut(s) 952, 1351
Bsa29I ATCGAT 2 cut(s) 291, 1338
BsaHI GRCGYC 3 cut(s) 632, 989, 1363
BsaJI CCNNGG 3 cut(s) 391, 1130, 1747
BsaXI ACNNNNNCTCC 8 cut(s) 207, 237, 438, 468, 571, 576, 601, 606
Bsc4I CCNNNNNNNGG 4 cut(s) 695, 881, 1136, 1716
Bse1I ACTGG 1 cut(s) 1657
BseAI TCCGGA 2 cut(s) 611, 1597
BseBI CCWGG 2 cut(s) 1194, 1590
BseCI ATCGAT 2 cut(s) 291, 1338
BseDI CCNNGG 3 cut(s) 391, 1130, 1747
BseGI GGATG 9 cut(s) 387, 426, 859, 1071, 1234, 1305, 1366, 1519, 1618
BseLI CCNNNNNNNGG 4 cut(s) 695, 881, 1136, 1716
BseMII CTCAG 1 cut(s) 1389
BseNI ACTGG 1 cut(s) 1657
BseRI GAGGAG 3 cut(s) 22, 80, 1622
BseXI GCAGC 1 cut(s) 671
Bsh1236I CGCG 4 cut(s) 1016, 1034, 1445, 1726
Bsh1285I CGRYCG 1 cut(s) 813
BshFI GGCC 1 cut(s) 1529
BshVI ATCGAT 2 cut(s) 291, 1338
BsiEI CGRYCG 1 cut(s) 813
BsiHKAI GWGCWC 1 cut(s) 589
BsiHKCI CYCGRG 1 cut(s) 1418
BsiWI CGTACG 1 cut(s) 1737
BslI CCNNNNNNNGG 4 cut(s) 695, 881, 1136, 1716
BsmAI GTCTC 5 cut(s) 211, 746, 960, 996, 1354
BsmBI CGTCTC 4 cut(s) 746, 960, 996, 1354
BsnI GGCC 1 cut(s) 1529
BsoBI CYCGRG 1 cut(s) 1418
Bsp119I TTCGAA 1 cut(s) 1185
Bsp1286I GDGCHC 1 cut(s) 589
Bsp13I TCCGGA 2 cut(s) 611, 1597
Bsp19I CCATGG 1 cut(s) 1747
Bsp68I TCGCGA 1 cut(s) 1016
BspACI CCGC 8 cut(s) 67, 105, 948, 1445, 1560, 1604, 1710, 1724
BspANI GGCC 1 cut(s) 1529
BspCNI CTCAG 1 cut(s) 1388
BspDI ATCGAT 2 cut(s) 291, 1338
BspEI TCCGGA 2 cut(s) 611, 1597
BspFNI CGCG 4 cut(s) 1016, 1034, 1445, 1726
BspLI GGNNCC 3 cut(s) 915, 1587, 1734
BspMI ACCTGC 1 cut(s) 1422
BspPI GGATC 7 cut(s) 287, 311, 866, 1311, 1451, 1580, 1593
BspT104I TTCGAA 1 cut(s) 1185
BsrI ACTGG 1 cut(s) 1657
BssECI CCNNGG 3 cut(s) 391, 1130, 1747
BssNI GRCGYC 3 cut(s) 632, 989, 1363
BssSI CACGAG 2 cut(s) 459, 642
BssT1I CCWWGG 2 cut(s) 1130, 1747
Bst2BI CACGAG 2 cut(s) 459, 642
Bst2UI CCWGG 2 cut(s) 1194, 1590
Bst6I CTCTTC 5 cut(s) 51, 63, 260, 405, 482
BstACI GRCGYC 3 cut(s) 632, 989, 1363
BstBI TTCGAA 1 cut(s) 1185
BstDEI CTNAG 3 cut(s) 202, 1149, 1375
BstDSI CCRYGG 2 cut(s) 391, 1747
BstF5I GGATG 9 cut(s) 387, 426, 859, 1071, 1234, 1305, 1366, 1519, 1618
BstFNI CGCG 4 cut(s) 1016, 1034, 1445, 1726
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 1 cut(s) 422
BstMAI GTCTC 5 cut(s) 211, 746, 960, 996, 1354
BstMCI CGRYCG 1 cut(s) 813
BstMWI GCNNNNNNNGC 5 cut(s) 638, 647, 656, 1040, 1220
BstNI CCWGG 2 cut(s) 1194, 1590
BstNSI RCATGY 2 cut(s) 329, 1075
BstSCI CCNGG 4 cut(s) 950, 1192, 1349, 1588
BstSFI CTRYAG 1 cut(s) 535
BstUI CGCG 4 cut(s) 1016, 1034, 1445, 1726
BstV1I GCAGC 1 cut(s) 671
BstX2I RGATCY 4 cut(s) 1303, 1456, 1470, 1585
BstYI RGATCY 4 cut(s) 1303, 1456, 1470, 1585
Bsu15I ATCGAT 2 cut(s) 291, 1338
BsuRI GGCC 1 cut(s) 1529
BsuTUI ATCGAT 2 cut(s) 291, 1338
BtgI CCRYGG 2 cut(s) 391, 1747
BtgZI GCGATG 1 cut(s) 857
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 9 cut(s) 387, 426, 859, 1071, 1234, 1305, 1366, 1519, 1618
BtsIMutI CAGTG 1 cut(s) 404
BtuMI TCGCGA 1 cut(s) 1016
BveI ACCTGC 1 cut(s) 1422
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 4 cut(s) 437, 464, 908, 1528
ClaI ATCGAT 2 cut(s) 291, 1338
CpoI CGGWCCG 1 cut(s) 908
CseI GACGC 3 cut(s) 621, 1237, 1688
Csp6I GTAC 8 cut(s) 820, 904, 1110, 1153, 1435, 1521, 1540, 1738
CspI CGGWCCG 1 cut(s) 908
CviAII CATG 6 cut(s) 326, 1007, 1060, 1072, 1313, 1748
CviQI GTAC 8 cut(s) 820, 904, 1110, 1153, 1435, 1521, 1540, 1738
DdeI CTNAG 3 cut(s) 202, 1149, 1375
DrdI GACNNNNNNGTC 1 cut(s) 994
DseDI GACNNNNNNGTC 1 cut(s) 994
Eam1104I CTCTTC 5 cut(s) 51, 63, 260, 405, 482
EarI CTCTTC 5 cut(s) 51, 63, 260, 405, 482
EciI GGCGGA 4 cut(s) 94, 937, 1575, 1619
Ecl136II GAGCTC 1 cut(s) 587
Eco130I CCWWGG 2 cut(s) 1130, 1747
Eco24I GRGCYC 1 cut(s) 589
Eco47I GGWCC 3 cut(s) 437, 464, 908
Eco53kI GAGCTC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 715
Eco88I CYCGRG 1 cut(s) 1418
EcoICRI GAGCTC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 1192, 1588
EcoT14I CCWWGG 2 cut(s) 1130, 1747
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 2 cut(s) 1130, 1747
Esp3I CGTCTC 4 cut(s) 746, 960, 996, 1354
FaeI CATG 6 cut(s) 329, 1010, 1063, 1075, 1316, 1751
FalI AAGNNNNNCTT 2 cut(s) 709, 741
FatI CATG 6 cut(s) 325, 1006, 1059, 1071, 1312, 1747
Fnu4HI GCNGC 5 cut(s) 67, 660, 1446, 1710, 1724
FokI GGATG 9 cut(s) 374, 413, 846, 1078, 1241, 1312, 1353, 1526, 1625
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 5 cut(s) 67, 660, 1446, 1710, 1724
FspBI CTAG 3 cut(s) 663, 722, 1581
GlaI GCGC 1 cut(s) 421
GluI GCNGC 5 cut(s) 67, 660, 1446, 1710, 1724
GsuI CTGGAG 1 cut(s) 1674
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 1 cut(s) 1529
HgaI GACGC 3 cut(s) 621, 1237, 1688
HhaI GCGC 1 cut(s) 422
Hin1I GRCGYC 3 cut(s) 632, 989, 1363
Hin1II CATG 6 cut(s) 329, 1010, 1063, 1075, 1316, 1751
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 2 cut(s) 1487, 1781
HpaI GTTAAC 1 cut(s) 694
HphI GGTGA 8 cut(s) 204, 250, 767, 1339, 1342, 1495, 1639, 1684
Hpy166II GTNNAC 3 cut(s) 694, 1441, 1639
Hpy188I TCNGA 9 cut(s) 227, 337, 763, 782, 815, 975, 1171, 1371, 1461
Hpy8I GTNNAC 3 cut(s) 694, 1441, 1639
HpyAV CCTTC 6 cut(s) 34, 309, 318, 1085, 1321, 1722
HpyCH4V TGCA 1 cut(s) 1262
HpyF10VI GCNNNNNNNGC 5 cut(s) 638, 647, 656, 1040, 1220
HpyF3I CTNAG 3 cut(s) 202, 1149, 1375
Hsp92I GRCGYC 3 cut(s) 632, 989, 1363
Hsp92II CATG 6 cut(s) 329, 1010, 1063, 1075, 1316, 1751
HspAI GCGC 1 cut(s) 420
Kpn2I TCCGGA 2 cut(s) 611, 1597
KspAI GTTAAC 1 cut(s) 694
LmnI GCTCC 5 cut(s) 352, 584, 592, 647, 1693
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 1 cut(s) 1452
MaeI CTAG 3 cut(s) 663, 722, 1581
MflI RGATCY 4 cut(s) 1303, 1456, 1470, 1585
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 1 cut(s) 836
MlyI GAGTC 2 cut(s) 232, 1175
MmeI TCCRAC 4 cut(s) 250, 395, 1056, 1149
MroI TCCGGA 2 cut(s) 611, 1597
MroXI GAANNNNTTC 1 cut(s) 1181
MslI CAYNNNNRTG 1 cut(s) 1064
MspR9I CCNGG 4 cut(s) 952, 1194, 1351, 1590
MvaI CCWGG 2 cut(s) 1194, 1590
MvnI CGCG 4 cut(s) 1016, 1034, 1445, 1726
MwoI GCNNNNNNNGC 5 cut(s) 638, 647, 656, 1040, 1220
NciI CCSGG 2 cut(s) 952, 1351
NcoI CCATGG 1 cut(s) 1747
NlaIII CATG 6 cut(s) 329, 1010, 1063, 1075, 1316, 1751
NlaIV GGNNCC 3 cut(s) 915, 1587, 1734
NmuCI GTSAC 6 cut(s) 408, 1028, 1345, 1627, 1648, 1769
NruI TCGCGA 1 cut(s) 1016
NspI RCATGY 2 cut(s) 329, 1075
NspV TTCGAA 1 cut(s) 1185
PciI ACATGT 2 cut(s) 325, 1071
PcsI WCGNNNNNNNCGW 3 cut(s) 819, 995, 1710
PdmI GAANNNNTTC 1 cut(s) 1181
Pfl23II CGTACG 1 cut(s) 1737
PflMI CCANNNNNTGG 1 cut(s) 1136
PfoI TCCNGGA 1 cut(s) 1192
PkrI GCNGC 5 cut(s) 68, 661, 1447, 1711, 1725
Ple19I CGATCG 1 cut(s) 813
PleI GAGTC 2 cut(s) 232, 1174
PpsI GAGTC 2 cut(s) 232, 1174
PscI ACATGT 2 cut(s) 325, 1071
PshBI ATTAAT 2 cut(s) 1218, 1404
PsiI TTATAA 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 589
Psp1406I AACGTT 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 1192, 1588
PspGI CCWGG 2 cut(s) 1192, 1588
PspLI CGTACG 1 cut(s) 1737
PspN4I GGNNCC 3 cut(s) 915, 1587, 1734
PspPI GGNCC 4 cut(s) 437, 464, 908, 1528
PsuI RGATCY 4 cut(s) 1303, 1456, 1470, 1585
PvuI CGATCG 1 cut(s) 813
RruI TCGCGA 1 cut(s) 1016
RsaI GTAC 8 cut(s) 821, 905, 1111, 1154, 1436, 1522, 1541, 1739
RsaNI GTAC 8 cut(s) 820, 904, 1110, 1153, 1435, 1521, 1540, 1738
RseI CAYNNNNRTG 1 cut(s) 1064
Rsr2I CGGWCCG 1 cut(s) 908
RsrII CGGWCCG 1 cut(s) 908
SacI GAGCTC 1 cut(s) 589
SatI GCNGC 5 cut(s) 67, 660, 1446, 1710, 1724
Sau96I GGNCC 4 cut(s) 437, 464, 908, 1528
SchI GAGTC 2 cut(s) 232, 1175
ScrFI CCNGG 4 cut(s) 952, 1194, 1351, 1590
SduI GDGCHC 1 cut(s) 589
SfaNI GCATC 1 cut(s) 1452
SfcI CTRYAG 1 cut(s) 535
SfuI TTCGAA 1 cut(s) 1185
SinI GGWCC 3 cut(s) 437, 464, 908
SmiMI CAYNNNNRTG 1 cut(s) 1064
Sse9I AATT 1 cut(s) 836
SsiI CCGC 8 cut(s) 67, 105, 948, 1445, 1560, 1604, 1710, 1724
SspI AATATT 1 cut(s) 1270
SspMI CTAG 3 cut(s) 663, 722, 1581
SstI GAGCTC 1 cut(s) 589
StyD4I CCNGG 4 cut(s) 950, 1192, 1349, 1588
StyI CCWWGG 2 cut(s) 1130, 1747
TasI AATT 1 cut(s) 836
TauI GCSGC 4 cut(s) 69, 1448, 1712, 1726
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 6 cut(s) 408, 1028, 1345, 1627, 1648, 1769
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 6 cut(s) 408, 1028, 1345, 1627, 1648, 1769
TspDTI ATGAA 7 cut(s) 38, 277, 1082, 1190, 1245, 1301, 1659
TspGWI ACGGA 7 cut(s) 83, 301, 419, 984, 1134, 1725, 1755
TspRI CASTG 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 1136
VpaK11BI GGWCC 3 cut(s) 437, 464, 908
VspI ATTAAT 2 cut(s) 1218, 1404
XceI RCATGY 2 cut(s) 329, 1075
XmnI GAANNNNTTC 1 cut(s) 1181
XspI CTAG 3 cut(s) 663, 722, 1581
ZraI GACGTC 2 cut(s) 990, 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.