FvH4_4g34690

carotenoid cleavage dioxygenase 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012126
Physical Location & Seq
Forward (+)
32325672 .. 32328256
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34690.t1

Sequence Viewer

Length: 1770 bp
ATGGATGCCTTGTCCTCCTCTTTCCTCTCCACATTTCCCACCCAACCCTCCACAACAGCCCCAAAACTCAAATCCCTCACCATCTCCTCTGTTAGAATCGAAGACAGACCCACAACCCAAACCCCTCCCAAAACACCACCACCACCACTACAACCCAAGCACACTGCTGCTACTACTAAGACTACTCCTTCTTCTCCATCCTACTCCTCCCCACCACCCACAAAACCTAATCCAACAACACTCCCGGCTGCCATCTTCAACCTTTTCGACGACTTCATCAACACCTTCGTCGACCCTCCCATCCGCCCTTCCGTCGACCCCAAACACGTCCTCACCGGCAACTTCGCTCCCATCACCGAACTCCCACCAACCGAGTGTGACGTCATCCACGGCTCATTACCCTCCTGCCTCGACGGCGCTTACATCCGCAACGGCCCAAACCCTCAGTACCTCCCGCGCGGGCCCTACCACCTCTTCGACGGCGACGGCATGCTCCACTCCCTCAGAGTCTCCCAAGGCCGCGCCGTCCTCTGCAGCCGCTACGTCAAGACGTATAAATACACCGTCGAGCGCGACGCCGGCTTCCCTCTCCTCCCCAACGTCTTCTCCGGCTTCAACGGCCTAACCGCCTCCGCGACACGTGGCGCGCTCTCAGCTGCCCGCGTGGCGTCCGGGATGTACAACCCCGCCAACGGCATTGGCAACGCCAACACCAGCCTCGCGTTCTTCGGCGGCAAGCTCTACGCGCTCGGCGAGTCTGACCTGCCTTACGCCGTCCGTTTGACCGCCGGCGGCGACGTCGAGACCGTCGGACGGGAGGACTTTAACGGCGAGCTGTTCATGAGCATGACGGCGCATCCGAAGGTGGACCCCGACACCGGCGAGGCCTTCGCTTTCCGTTACGGACCGGTTCCGCCGTATCTGACCTACTTCCGGTTCGATCCCGCCGGATCTAAACAGAAAGACGTGCCGGTGTTCTCCATGAAAAGTCCTTCTCTGCTGCACGACTTCGCGATCACGAAGAAGTACGCGGTGTTCGCCGACATCCAGATCGGGATGAACCCGATGGAGATGATCGGCGGCGGGTCTCCGGTGGGGCTGGACGCGTCGAAAGTGTCCAGAGTCGGGATAATCCCGAAATACGCGGCTGACGATTCGGAGATGAGGTGGTTTGAGGTCCCCGGGTTCAACATTATGCACGCGGTGAACGCGTGGGACGAAGACGACGCCGTCGTGATGGTGGCGCCGAACATCTTATCGGCGGAGCACACGCTCGAGAGAATGGGGCTCGTCCACGCGCTCGTCGAGAAAGTGAGGATCGATCTCAAGACCGGGATCGTAACCCGGCAACCGATCTCGACTCGGAATCTGGACTTCGCGGTGATCAACCCGGCTTACCAGGGGAAGAAGAACCGGTTCGTCTACGCGGCAGTCGGCGATCCGATGCCGAAGATCTCGGGAGTGGTGAAGCTCGACGTGTCGGGCTGTGAGCATAAGGAGAGCATAGTGGCGAGCAGGATGTACGGTGAGGATTGCTTCGGGGGAGAGCCGTTTTTCGTGGCGAGGGAGCCGGGGAATCCGGAGGCGGAGGAGGACGACGGGTATTTGGTGTCGTATGTTCATAATGAGAAGACGGGAGAGTCGAGGTTTTTGGTGATGGACGCCATGTCGTCTGAGCTGGACATCGTGGCGGCCGTGAAGCTGCCCCGGCGAGTGCCGTACGGTTTTCACGGGCTGTTTGTGAGGGAAAGTGACCTGAACAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
RPE65

Protein Analysis

590

Amino Acids

64.04

Weight (kDa)

5.94

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPE65 PF03055 117 - 581 3.4e-120 Retinal pigment epithelial membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19170
fragaria_vesca FvH4_4g34690
malus_domestica MD13G1090300.v1.1 MD16G1090700.v1.1
prunus_persica Prupe.1G255500_v2.0.a1 Prupe.1G255500_v2.0.a1
pyrus_communis pycom13g07860 pycom16g07750
rosa_chinensis RchiOBHm_Chr4g0444051
rosa_laevigata RLG00000005862
rosa_multiflora Rmu_co8344017.1_g000001 Rmu_sc0015522.1_g000005
rosa_roxburghii Rroxscaffold_5G00384610
rosa_rugosa Rorug04G0349200
rosa_samantha Rh4AG410000 Rh4BG421100 Rh4CG435500 Rh4DG416400
rosa_wichuraiana Rw4G035220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1229, 1639
AatII GACGTC 2 cut(s) 384, 801
Acc36I ACCTGC 1 cut(s) 771
AccB1I GGYRCC 1 cut(s) 1243
AccI GTMKAC 3 cut(s) 291, 315, 1422
AccIII TCCGGA 1 cut(s) 1579
AclWI GGATC 5 cut(s) 935, 958, 1325, 1343, 1433
AcoI YGGCCR 1 cut(s) 1692
AcvI CACGTG 1 cut(s) 641
AcyI GRCGYC 7 cut(s) 381, 576, 668, 798, 1227, 1244, 1662
AdeI CACNNNGTG 1 cut(s) 1204
AfaI GTAC 5 cut(s) 449, 680, 1028, 1523, 1721
AfiI CCNNNNNNNGG 5 cut(s) 692, 813, 878, 933, 1125
AflIII ACRYGT 5 cut(s) 325, 638, 1104, 1209, 1476
AgeI ACCGGT 2 cut(s) 907, 1413
AgsI TTSAA 3 cut(s) 259, 616, 1189
AhdI GACNNNNNGTC 1 cut(s) 1666
AjiI CACGTC 3 cut(s) 328, 967, 1477
AjnI CCWGG 1 cut(s) 1398
AluBI AGCT 6 cut(s) 656, 739, 835, 1471, 1678, 1702
AluI AGCT 6 cut(s) 656, 739, 835, 1471, 1678, 1702
Alw21I GWGCWC 1 cut(s) 1269
Alw26I GTCTC 3 cut(s) 514, 797, 1092
AlwI GGATC 5 cut(s) 935, 958, 1325, 1343, 1433
Ama87I CYCGRG 3 cut(s) 1181, 1274, 1456
Aor13HI TCCGGA 1 cut(s) 1579
AoxI GGCC 6 cut(s) 433, 461, 517, 619, 885, 1692
ApaI GGGCCC 1 cut(s) 465
ApeKI GCWGC 6 cut(s) 167, 248, 534, 656, 1000, 1702
AsiGI ACCGGT 2 cut(s) 907, 1413
Asp700I GAANNNNTTC 1 cut(s) 1415
AspS9I GGNCC 6 cut(s) 434, 461, 462, 868, 905, 1177
AsuC2I CCSGG 9 cut(s) 245, 673, 1182, 1183, 1333, 1345, 1391, 1572, 1708
AsuHPI GGTGA 8 cut(s) 70, 325, 346, 1216, 1393, 1477, 1538, 1666
AvaI CYCGRG 3 cut(s) 1181, 1274, 1456
AvaII GGWCC 3 cut(s) 868, 905, 1177
BaeGI GKGCMC 1 cut(s) 465
BanI GGYRCC 1 cut(s) 1243
BanII GRGCYC 2 cut(s) 465, 1290
BbrPI CACGTG 1 cut(s) 641
BbsI GAAGAC 4 cut(s) 108, 595, 1227, 1637
Bbv12I GWGCWC 1 cut(s) 1269
BbvI GCAGC 6 cut(s) 154, 235, 546, 643, 987, 1689
BccI CCATC 8 cut(s) 89, 205, 260, 308, 359, 1060, 1231, 1651
BciT130I CCWGG 1 cut(s) 1400
BclI TGATCA 1 cut(s) 1383
BcnI CCSGG 9 cut(s) 245, 673, 1182, 1183, 1333, 1345, 1391, 1572, 1708
BcoDI GTCTC 3 cut(s) 514, 797, 1092
BfmI CTRYAG 1 cut(s) 532
BfoI RGCGCY 2 cut(s) 420, 1247
BfuAI ACCTGC 1 cut(s) 771
BglI GCCNNNNNGGC 2 cut(s) 414, 665
BglII AGATCT 1 cut(s) 1452
Bme18I GGWCC 3 cut(s) 868, 905, 1177
BmeRI GACNNNNNGTC 1 cut(s) 1666
BmeT110I CYCGRG 3 cut(s) 1181, 1274, 1456
BmgBI CACGTC 3 cut(s) 328, 967, 1477
BmgT120I GGNCC 6 cut(s) 434, 461, 462, 868, 905, 1177
BmiI GGNNCC 6 cut(s) 463, 870, 912, 1179, 1245, 1569
BmsI GCATC 2 cut(s) 865, 1434
BpiI GAAGAC 4 cut(s) 108, 595, 1227, 1637
BpuEI CTTGAG 1 cut(s) 1310
BpuMI CCSGG 9 cut(s) 245, 673, 1182, 1183, 1333, 1345, 1391, 1572, 1708
Bsa29I ATCGAT 1 cut(s) 1320
BsaAI YACGTR 1 cut(s) 641
BsaHI GRCGYC 7 cut(s) 381, 576, 668, 798, 1227, 1244, 1662
BsaI GGTCTC 2 cut(s) 797, 1092
BsaJI CCNNGG 7 cut(s) 388, 514, 1180, 1181, 1399, 1571, 1706
BsaWI WCCGGW 5 cut(s) 907, 933, 1090, 1413, 1579
BsaXI ACNNNNNCTCC 4 cut(s) 590, 620, 1151, 1181
Bsc4I CCNNNNNNNGG 5 cut(s) 692, 813, 878, 933, 1125
Bse118I RCCGGY 7 cut(s) 335, 578, 788, 878, 907, 970, 1413
BseAI TCCGGA 1 cut(s) 1579
BseBI CCWGG 1 cut(s) 1400
BseCI ATCGAT 1 cut(s) 1320
BseDI CCNNGG 7 cut(s) 388, 514, 1180, 1181, 1399, 1571, 1706
BseLI CCNNNNNNNGG 5 cut(s) 692, 813, 878, 933, 1125
BseMII CTCAG 4 cut(s) 458, 517, 666, 1665
BsePI GCGCGC 1 cut(s) 645
BseRI GAGGAG 5 cut(s) 7, 76, 196, 581, 1604
BseSI GKGCMC 1 cut(s) 465
BseX3I CGGCCG 1 cut(s) 1692
BseXI GCAGC 6 cut(s) 154, 235, 546, 643, 987, 1689
BsgI GTGCAG 1 cut(s) 986
Bsh1285I CGRYCG 1 cut(s) 1695
BshFI GGCC 6 cut(s) 435, 463, 519, 621, 887, 1694
BshNI GGYRCC 1 cut(s) 1243
BshTI ACCGGT 2 cut(s) 907, 1413
BshVI ATCGAT 1 cut(s) 1320
BsiEI CGRYCG 1 cut(s) 1695
BsiHKAI GWGCWC 1 cut(s) 1269
BsiHKCI CYCGRG 3 cut(s) 1181, 1274, 1456
BsiWI CGTACG 1 cut(s) 1719
BslFI GGGAC 2 cut(s) 1163, 1229
BslI CCNNNNNNNGG 5 cut(s) 692, 813, 878, 933, 1125
BsmAI GTCTC 3 cut(s) 514, 797, 1092
BsmFI GGGAC 2 cut(s) 1163, 1229
BsnI GGCC 6 cut(s) 435, 463, 519, 621, 887, 1694
Bso31I GGTCTC 2 cut(s) 797, 1092
BsoBI CYCGRG 3 cut(s) 1181, 1274, 1456
Bsp120I GGGCCC 1 cut(s) 461
Bsp1286I GDGCHC 3 cut(s) 465, 1269, 1290
Bsp13I TCCGGA 1 cut(s) 1579
Bsp1407I TGTACA 1 cut(s) 678
Bsp68I TCGCGA 1 cut(s) 1013
BspANI GGCC 6 cut(s) 435, 463, 519, 621, 887, 1694
BspCNI CTCAG 4 cut(s) 457, 516, 665, 1666
BspDI ATCGAT 1 cut(s) 1320
BspEI TCCGGA 1 cut(s) 1579
BspHI TCATGA 1 cut(s) 840
BspLI GGNNCC 6 cut(s) 463, 870, 912, 1179, 1245, 1569
BspMAI CTGCAG 1 cut(s) 536
BspMI ACCTGC 1 cut(s) 771
BspPI GGATC 5 cut(s) 935, 958, 1325, 1343, 1433
BspT107I GGYRCC 1 cut(s) 1243
BspTNI GGTCTC 2 cut(s) 797, 1092
BsrFI RCCGGY 7 cut(s) 335, 578, 788, 878, 907, 970, 1413
BsrGI TGTACA 1 cut(s) 678
BssAI RCCGGY 7 cut(s) 335, 578, 788, 878, 907, 970, 1413
BssECI CCNNGG 7 cut(s) 388, 514, 1180, 1181, 1399, 1571, 1706
BssHII GCGCGC 1 cut(s) 645
BssNI GRCGYC 7 cut(s) 381, 576, 668, 798, 1227, 1244, 1662
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 1400
Bst4CI ACNGT 4 cut(s) 565, 808, 1526, 1724
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 7 cut(s) 381, 576, 668, 798, 1227, 1244, 1662
BstAUI TGTACA 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 641
BstDEI CTNAG 5 cut(s) 177, 444, 503, 652, 1674
BstDSI CCRYGG 1 cut(s) 388
BstH2I RGCGCY 2 cut(s) 420, 1247
BstMAI GTCTC 3 cut(s) 514, 797, 1092
BstMCI CGRYCG 1 cut(s) 1695
BstMWI GCNNNNNNNGC 9 cut(s) 414, 579, 618, 653, 665, 745, 1037, 1208, 1708
BstNI CCWGG 1 cut(s) 1400
BstNSI RCATGY 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 532
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 6 cut(s) 154, 235, 546, 643, 987, 1689
BstV2I GAAGAC 4 cut(s) 108, 595, 1227, 1637
BstX2I RGATCY 2 cut(s) 950, 1452
BstYI RGATCY 2 cut(s) 950, 1452
BstZI CGGCCG 1 cut(s) 1692
Bsu15I ATCGAT 1 cut(s) 1320
BsuRI GGCC 6 cut(s) 435, 463, 519, 621, 887, 1694
BsuTUI ATCGAT 1 cut(s) 1320
BtgI CCRYGG 1 cut(s) 388
BtrI CACGTC 3 cut(s) 328, 967, 1477
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
BtuMI TCGCGA 1 cut(s) 1013
BveI ACCTGC 1 cut(s) 771
CciI TCATGA 1 cut(s) 840
Cfr10I RCCGGY 7 cut(s) 335, 578, 788, 878, 907, 970, 1413
Cfr13I GGNCC 6 cut(s) 434, 461, 462, 868, 905, 1177
Cfr9I CCCGGG 1 cut(s) 1181
ClaI ATCGAT 1 cut(s) 1320
CpoI CGGWCCG 1 cut(s) 905
CseI GACGC 6 cut(s) 584, 657, 1095, 1112, 1235, 1670
Csp6I GTAC 5 cut(s) 448, 679, 1027, 1522, 1720
CspAI ACCGGT 2 cut(s) 907, 1413
CspI CGGWCCG 1 cut(s) 905
CviAII CATG 5 cut(s) 490, 841, 847, 982, 1666
CviQI GTAC 5 cut(s) 448, 679, 1027, 1522, 1720
DdeI CTNAG 5 cut(s) 177, 444, 503, 652, 1674
DinI GGCGCC 1 cut(s) 1245
DraIII CACNNNGTG 1 cut(s) 1204
DrdI GACNNNNNNGTC 2 cut(s) 1229, 1639
DriI GACNNNNNGTC 1 cut(s) 1666
DseDI GACNNNNNNGTC 2 cut(s) 1229, 1639
EaeI YGGCCR 1 cut(s) 1692
EagI CGGCCG 1 cut(s) 1692
Eam1104I CTCTTC 1 cut(s) 479
Eam1105I GACNNNNNGTC 1 cut(s) 1666
EarI CTCTTC 1 cut(s) 479
EciI GGCGGA 4 cut(s) 293, 903, 1277, 1601
EclXI CGGCCG 1 cut(s) 1692
Eco130I CCWWGG 1 cut(s) 514
Eco147I AGGCCT 1 cut(s) 887
Eco24I GRGCYC 2 cut(s) 465, 1290
Eco31I GGTCTC 2 cut(s) 797, 1092
Eco47I GGWCC 3 cut(s) 868, 905, 1177
Eco52I CGGCCG 1 cut(s) 1692
Eco72I CACGTG 1 cut(s) 641
Eco88I CYCGRG 3 cut(s) 1181, 1274, 1456
EcoO109I RGGNCCY 2 cut(s) 462, 1177
EcoRII CCWGG 1 cut(s) 1398
EcoT14I CCWWGG 1 cut(s) 514
EcoT38I GRGCYC 2 cut(s) 465, 1290
EgeI GGCGCC 1 cut(s) 1245
EheI GGCGCC 1 cut(s) 1245
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 5 cut(s) 493, 844, 850, 985, 1669
FaqI GGGAC 2 cut(s) 1163, 1229
FatI CATG 5 cut(s) 489, 840, 846, 981, 1665
FauI CCCGC 6 cut(s) 452, 462, 668, 694, 952, 1076
FbaI TGATCA 1 cut(s) 1383
FblI GTMKAC 3 cut(s) 291, 315, 1422
FriOI GRGCYC 2 cut(s) 465, 1290
HaeII RGCGCY 2 cut(s) 420, 1247
HaeIII GGCC 6 cut(s) 435, 463, 519, 621, 887, 1694
HgaI GACGC 6 cut(s) 584, 657, 1095, 1112, 1235, 1670
Hin1I GRCGYC 7 cut(s) 381, 576, 668, 798, 1227, 1244, 1662
Hin1II CATG 5 cut(s) 493, 844, 850, 985, 1669
HincII GTYRAC 2 cut(s) 292, 316
HindII GTYRAC 2 cut(s) 292, 316
HinfI GANTC 9 cut(s) 96, 507, 755, 1122, 1154, 1360, 1366, 1576, 1640
HphI GGTGA 8 cut(s) 70, 325, 346, 1216, 1393, 1477, 1538, 1666
Hpy166II GTNNAC 6 cut(s) 292, 316, 868, 1207, 1294, 1423
Hpy188I TCNGA 9 cut(s) 506, 760, 812, 861, 924, 1159, 1365, 1443, 1675
Hpy8I GTNNAC 6 cut(s) 292, 316, 868, 1207, 1294, 1423
HpyAV CCTTC 6 cut(s) 198, 295, 318, 856, 898, 1002
HpyCH4III ACNGT 4 cut(s) 565, 808, 1526, 1724
HpyCH4IV ACGT 9 cut(s) 327, 381, 543, 551, 600, 640, 798, 966, 1476
HpyCH4V TGCA 3 cut(s) 534, 1003, 1198
HpyF10VI GCNNNNNNNGC 9 cut(s) 414, 579, 618, 653, 665, 745, 1037, 1208, 1708
HpyF3I CTNAG 5 cut(s) 177, 444, 503, 652, 1674
HpySE526I ACGT 9 cut(s) 327, 381, 543, 551, 600, 640, 798, 966, 1476
Hsp92I GRCGYC 7 cut(s) 381, 576, 668, 798, 1227, 1244, 1662
Hsp92II CATG 5 cut(s) 493, 844, 850, 985, 1669
KasI GGCGCC 1 cut(s) 1243
Kpn2I TCCGGA 1 cut(s) 1579
KroI GCCGGC 2 cut(s) 578, 788
KroNI GCCGGC 2 cut(s) 580, 790
Ksp22I TGATCA 1 cut(s) 1383
LmnI GCTCC 4 cut(s) 352, 498, 1264, 1567
Lsp1109I GCAGC 6 cut(s) 154, 235, 546, 643, 987, 1689
LweI GCATC 2 cut(s) 865, 1434
MaeII ACGT 9 cut(s) 327, 381, 543, 551, 600, 640, 798, 966, 1476
MaeIII GTNAC 4 cut(s) 377, 899, 1339, 1751
MflI RGATCY 2 cut(s) 950, 1452
MhlI GDGCHC 3 cut(s) 465, 1269, 1290
MluI ACGCGT 2 cut(s) 1104, 1209
Mly113I GGCGCC 1 cut(s) 1244
MlyI GAGTC 5 cut(s) 516, 764, 1131, 1354, 1649
MmeI TCCRAC 2 cut(s) 257, 790
MreI CGCCGGCG 1 cut(s) 788
MroI TCCGGA 1 cut(s) 1579
MroNI GCCGGC 2 cut(s) 578, 788
MroXI GAANNNNTTC 1 cut(s) 1415
MseI TTAA 1 cut(s) 825
MslI CAYNNNNRTG 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 656
MvaI CCWGG 1 cut(s) 1400
MwoI GCNNNNNNNGC 9 cut(s) 414, 579, 618, 653, 665, 745, 1037, 1208, 1708
NaeI GCCGGC 2 cut(s) 580, 790
NarI GGCGCC 1 cut(s) 1244
NciI CCSGG 9 cut(s) 245, 673, 1182, 1183, 1333, 1345, 1391, 1572, 1708
NgoMIV GCCGGC 2 cut(s) 578, 788
NlaIII CATG 5 cut(s) 493, 844, 850, 985, 1669
NlaIV GGNNCC 6 cut(s) 463, 870, 912, 1179, 1245, 1569
NmeAIII GCCGAG 1 cut(s) 729
NmuCI GTSAC 2 cut(s) 377, 1751
NruI TCGCGA 1 cut(s) 1013
NspI RCATGY 1 cut(s) 493
PaeI GCATGC 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 1274
PagI TCATGA 1 cut(s) 840
PauI GCGCGC 1 cut(s) 645
PceI AGGCCT 1 cut(s) 887
PcsI WCGNNNNNNNCGW 9 cut(s) 750, 804, 857, 1149, 1215, 1230, 1302, 1640, 1692
PdiI GCCGGC 2 cut(s) 580, 790
PdmI GAANNNNTTC 1 cut(s) 1415
PfeI GAWTC 4 cut(s) 96, 1154, 1366, 1576
Pfl23II CGTACG 1 cut(s) 1719
PflFI GACNNNGTC 1 cut(s) 1229
PfoI TCCNGGA 1 cut(s) 671
PinAI ACCGGT 2 cut(s) 907, 1413
PleI GAGTC 5 cut(s) 515, 763, 1130, 1354, 1648
PluTI GGCGCC 1 cut(s) 1247
PmaCI CACGTG 1 cut(s) 641
PmlI CACGTG 1 cut(s) 641
PpsI GAGTC 5 cut(s) 515, 763, 1130, 1354, 1648
Ppu21I YACGTR 1 cut(s) 641
PpuMI RGGWCCY 1 cut(s) 1177
Psp5II RGGWCCY 1 cut(s) 1177
Psp6I CCWGG 1 cut(s) 1398
PspCI CACGTG 1 cut(s) 641
PspGI CCWGG 1 cut(s) 1398
PspLI CGTACG 1 cut(s) 1719
PspN4I GGNNCC 6 cut(s) 463, 870, 912, 1179, 1245, 1569
PspOMI GGGCCC 1 cut(s) 461
PspPI GGNCC 6 cut(s) 434, 461, 462, 868, 905, 1177
PspPPI RGGWCCY 1 cut(s) 1177
PsrI GAACNNNNNNTAC 2 cut(s) 1019, 1051
PstI CTGCAG 1 cut(s) 536
PsuI RGATCY 2 cut(s) 950, 1452
PsyI GACNNNGTC 1 cut(s) 1229
PteI GCGCGC 1 cut(s) 645
PvuII CAGCTG 1 cut(s) 656
RruI TCGCGA 1 cut(s) 1013
RsaI GTAC 5 cut(s) 449, 680, 1028, 1523, 1721
RsaNI GTAC 5 cut(s) 448, 679, 1027, 1522, 1720
RseI CAYNNNNRTG 1 cut(s) 845
Rsr2I CGGWCCG 1 cut(s) 905
RsrII CGGWCCG 1 cut(s) 905
SalI GTCGAC 2 cut(s) 290, 314
SaqAI TTAA 1 cut(s) 825
Sau96I GGNCC 6 cut(s) 434, 461, 462, 868, 905, 1177
SchI GAGTC 5 cut(s) 516, 764, 1131, 1354, 1649
SduI GDGCHC 3 cut(s) 465, 1269, 1290
SfaNI GCATC 2 cut(s) 865, 1434
SfcI CTRYAG 1 cut(s) 532
SfoI GGCGCC 1 cut(s) 1245
Sfr274I CTCGAG 1 cut(s) 1274
SgrAI CRCCGGYG 2 cut(s) 788, 878
SinI GGWCC 3 cut(s) 868, 905, 1177
SlaI CTCGAG 1 cut(s) 1274
SmaI CCCGGG 1 cut(s) 1183
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 2 cut(s) 1274, 1325
SmoI CTYRAG 2 cut(s) 1274, 1325
SphI GCATGC 1 cut(s) 493
SseBI AGGCCT 1 cut(s) 887
SspDI GGCGCC 1 cut(s) 1243
StuI AGGCCT 1 cut(s) 887
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 4 cut(s) 565, 808, 1526, 1724
TaiI ACGT 9 cut(s) 330, 384, 546, 554, 603, 643, 801, 969, 1479
TatI WGTACW 1 cut(s) 678
TauI GCSGC 8 cut(s) 522, 540, 735, 795, 1083, 1148, 1430, 1694
TfiI GAWTC 4 cut(s) 96, 1154, 1366, 1576
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 377, 1751
TseI GCWGC 6 cut(s) 167, 248, 534, 656, 1000, 1702
Tsp45I GTSAC 2 cut(s) 377, 1751
TspDTI ATGAA 5 cut(s) 265, 829, 998, 1073, 1610
TspGWI ACGGA 4 cut(s) 301, 767, 887, 918
TspMI CCCGGG 1 cut(s) 1181
TspRI CASTG 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 1229
VpaK11BI GGWCC 3 cut(s) 868, 905, 1177
XceI RCATGY 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 1274
XmaI CCCGGG 1 cut(s) 1181
XmiI GTMKAC 3 cut(s) 291, 315, 1422
XmnI GAANNNNTTC 1 cut(s) 1415
ZraI GACGTC 2 cut(s) 382, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.